rna4567, rna4567 (mRNA) Nannochloropsis gaditana

Overview
Namerna4567
Unique Namerna4567
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length693
Alignment locationCM002463.1:932234..932977 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100014g45.9283.mrna
Orig protein idgnl|cribi|Naga_100014g45.9283
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:932234..932977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g45gene4406Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26106.1cds4555Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4567rna4567-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4567 ID=rna4567|Name=rna4567|organism=Nannochloropsis gaditana|type=mRNA|length=693bp
ATGGTGCCAGGCACGAGGGGCCAAATTGAGCACGGTGAAGGCGGCGAATG
TCACACTCGCGAGGCTCCCGCCACAGGCGATAGCGAAGCCGAAGCCGAGA
AAAAAGATGCCGAGTCCCGCGAGGAAGGTCGGGTGGGAGAGCCAGTGGCC
TGGGAAAACGTGGAGCCTGGAGAGAGAGCGGGCCTGCAGGTAGCTGTTGA
GGGAGCAGAAGGTCCAGGCCATGAGCATTACGCTCAAGGGCATGGGCCTG
CTGGGGGCCATTCGGAGGGGGTAAAGGAAAGCGCGGTTCACATAGTGCAG
GAGGAAGAGGCTCACCAGGGCCCGGTTGGCGACGCTCCTGGTCGCAGCCT
TAAACCAAGCAAGCTTGGCGTTGACGAGCGGTCCCCATCCGCGGGCCTCA
GAGTACCGGCCGTATGGAGCTGGGCGCATCATGAGGATAAATGCAGTACC
AAAGCCCGAGGCCAGCATGACGAGGGCCAGGCAAGAGTGAAACAGTGCTT
CATCCGCAATACTCATTGCGAGCCTTCGTTCCTGTACACTGAAACATACG
ATATTTCGTTCAAAATGTATATCATGATATCATTTGGCTCGCTAGAAGGT
ATGAAGATGCATTACAAGGCATGGCAGCTTCAGGAATACTTCCGTTCCCG
AACCGCGCGACTCGTGTGCCATGTAATGTACGAGTGCTTTTAA
back to top

protein sequence of rna4567

>rna4567-protein ID=rna4567-protein|Name=rna4567|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MRTHIADGEPFPYSFPSPSRKRQIPHEDRDILEIKRRMGGLRFGEELPDL
GSSLQPPIDVNLTPLHGSPDSVFGSSGGPGVPPPVPGPNCAGKSTAPHGF
PQTPSIDEGATEMDSEESEGDDEVAGVLNGRSDTRSRFSGHEKDLAKDAF
RRGTQDVSRIDEDDPRATMLNILYKRRPPRDKVEEKIENLIRRSMLRATP
GGPAAPPLSQCDAPWPVTESQRMDGSGSSASSHFLPKNDDGGGDMDM
back to top

mRNA from alignment at CM002463.1:932234..932977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4567 ID=rna4567|Name=rna4567|organism=Nannochloropsis gaditana|type=mRNA|length=744bp|location=Sequence derived from alignment at CM002463.1:932234..932977- (Nannochloropsis gaditana)
ATGCGCACACACATTGCGGACGGAGAGCCTTTCCCTTACTCTTTCCCCTC
TCCATCACGCAAACGGCAAATTCCACACGAGGACCGGGACATTCTTGAGA
TCAAGCGACGTATGGGCGGTCTGCGCTTCGGGGAAGAATTACCCGACCTT
GGCAGCAGTTTACAACCTCCAATAGATGTAAACCTGACCCCTCTACATGG
AAGTCCCGACTCTGTCTTTGGCTCGAGTGGTGGGCCTGGCGTGCCCCCCC
CCGTCCCCGGCCCCAATTGTGCTGGAAAGTCGACGGCGCCCCATGGATTT
CCTCAGACCCCGTCCATCGATGAAGGCGCTACAGAGATGGACAGTGAAGA
GAGCGAGGGGGATGACGAAGTGGCGGGTGTGTTGAACGGGAGATCAGACA
CCAGGAGTAGGTTTTCTGGACATGAAAAGGACCTGGCAAAGGACGCGTTT
CGCAGGGGCACGCAGGACGTTTCTCGCATCGACGAGGATGATCCGCGTGC
CACCATGCTGAATATCTTGTACAAGCGACGTCCACCACGGGACAAGGTGG
AGGAAAAAATCGAGAACCTAATTCGTCGCTCGATGCTGCGCGCCACGCCT
GGTGGTCCCGCGGCCCCTCCGCTCTCTCAATGCGACGCCCCGTGGCCGGT
GACAGAGTCGCAGCGCATGGACGGAAGCGGGAGCAGCGCGTCATCGCATT
TCCTTCCAAAGAATGATGATGGTGGCGGCGATATGGACATGTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:932234..932977-

>rna4567 ID=rna4567|Name=rna4567|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at CM002463.1:932234..932977- (Nannochloropsis gaditana)
ATGCGCACACACATTGCGGACGGAGAGCCTTTCCCTTACTCTTTCCCCTC
TCCATCACGCAAACGGCAAATTCCACACGAGGACCGGGACATTCTTGAGA
TCAAGCGACGTATGGGCGGTCTGCGCTTCGGGGAAGAATTACCCGACCTT
GGCAGCAGTTTACAACCTCCAATAGATGTAAACCTGACCCCTCTACATGG
AAGTCCCGACTCTGTCTTTGGCTCGAGTGGTGGGCCTGGCGTGCCCCCCC
CCGTCCCCGGCCCCAATTGTGCTGGAAAGTCGACGGCGCCCCATGGATTT
CCTCAGACCCCGTCCATCGATGAAGGCGCTACAGAGATGGACAGTGAAGA
GAGCGAGGGGGATGACGAAGTGGCGGGTGTGTTGAACGGGAGATCAGACA
CCAGGAGTAGGTTTTCTGGACATGAAAAGGACCTGGCAAAGGACGCGTTT
CGCAGGGGCACGCAGGACGTTTCTCGCATCGACGAGGATGATCCGCGTGC
CACCATGCTGAATATCTTGTACAAGCGACGTCCACCACGGGACAAGGTGG
AGGAAAAAATCGAGAACCTAATTCGTCGCTCGATGCTGCGCGCCACGCCT
GGTGGTCCCGCGGCCCCTCCGCTCTCTCAATGCGACGCCCCGTGGCCGGT
GACAGAGTCGCAGCGCATGGACGGAAGCGGGAGCAGCGCGTCATCGCATT
TCCTTCCAAAGAATGATGATGGTGGCGGCGATATGGACATGTGA
back to top
Synonyms
Publications