rna4566, rna4566 (mRNA) Nannochloropsis gaditana

Overview
Namerna4566
Unique Namerna4566
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1180
Alignment locationCM002463.1:931110..932087 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100014g44.9270.mrna
Orig protein idgnl|cribi|Naga_100014g44.9270
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:931110..932087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g44gene4405Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4566rna4566-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26093.1cds4554Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4566 ID=rna4566|Name=rna4566|organism=Nannochloropsis gaditana|type=mRNA|length=1180bp
TCAACAGGCGCAGTTATGCTACAACCCATGCACCATGTCCAACTGAGACC
TTGGCAACTAAACATGTGAAAATATCCCACGTCCTTCCCGTTCATGGAAT
CGGAGTGGCGGAATCACGGGGTAGGCAGGTCGTTCTTGACCACAGGGGGA
GGGCGGCAGTGAGAAGGACGCCGTCGCTCGAGAAGAAGCTTGCCGTCTTC
CGCTCTCTCGCCCCGGTCGTGCTGCTTTCTTGGTTTGCCTTGGTGAGATC
TCTTTCACTCGCTCATCGCATCTTCTTAACAATCACAGCTCTACTTGACC
CCTTTCGACTGAGGGCGCTCCTTTAGTCATGGCAAGTCGGTATGACCGTG
CAATTACTGTTTTCTCGCCGGATGGGCACTTGTTTCAAGTGGAGTATGCC
ATAGAAGCTGTCAAACGAGGGTCGTCTGCAGTCGGCGTACGGGGGAAGAG
TTCTGTTATTCTGGGGGTGGAGCGTCGCGCAACAGCGAAATTGCAGGATC
CTCGTACCATAAAGAAGATTTGTAAGATTGATGAGCATGTGACGCTGGCG
TTTGCGGGGCTGACGGCGGATGCGCGCGTGCTCGTGAATAAGGCCCGCCT
GGAGTGTCAGAGCTACCGGCTCACGTACGAGGACGCGCCCACAGTAGAGT
ATGTGGCGCGATACATTGCACGCACCCAGCAGAAGTACACACAACGGGGG
GGAGTGCGGCCATTCGGCGTCTCGTGTGTCATCGCAGGGACCAACCCCGA
CGGCAGTGCCGTGCTTTATCAGACCGATCCTGCTGGCACCTATTCGGCGT
GGAAGGCGACAGCCGTGGGCGGCCGAAACTCTTCCAACATGCAAGAGTAT
CTTGAAAAGCAGTGGGCGGATGACCTGGAGGAAGAAAATGCCATCCGCTT
GACGGTCAAGACACTGCTGGAGGTGGTGGACTCCGGGGCCAAGAACATGG
AGGTTGCCGTCATCACGCAGGGTCGGCCCATGCGTATGCTGGACGAGGCC
ACGCTGGCAGCACTCTCCGCCTCCATCGAAGCGGAACAGGAGGAAGCAAA
GAAGAAAGCGAGTGCGGGATCAGGGGAGAGTAAAGAAAGCTAGGCAAGAG
AAAGGGGTTCAACGGCACGTATACGAGGAGGGACCGGCAGGCTTAAGATG
AAAAGAAAAATGCAAGCTGCGCGCATGTGC
back to top

protein sequence of rna4566

>rna4566-protein ID=rna4566-protein|Name=rna4566|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MVPGTRGQIEHGEGGECHTREAPATGDSEAEAEKKDAESREEGRVGEPVA
WENVEPGERAGLQVAVEGAEGPGHEHYAQGHGPAGGHSEGVKESAVHIVQ
EEEAHQGPVGDAPGRSLKPSKLGVDERSPSAGLRVPAVWSWAHHEDKCST
KARGQHDEGQARVKQCFIRNTHCEPSFLYTETYDISFKMYIMISFGSLEG
MKMHYKAWQLQEYFRSRTARLVCHVMYECF
back to top

mRNA from alignment at CM002463.1:931110..932087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4566 ID=rna4566|Name=rna4566|organism=Nannochloropsis gaditana|type=mRNA|length=978bp|location=Sequence derived from alignment at CM002463.1:931110..932087- (Nannochloropsis gaditana)
ATGGTGCCAGGCACGAGGGGCCAAATTGAGCACGGTGAAGGCGGCGAATG
TCACACTCGCGAGGCTCCCGCCACAGGCGATAGCGAAGCCGGTCCACTCC
ACCATCTCGCCCAAGAAATTGGCGGCTGAAACATACTCGAAGAGGCCACC
CCGGGGGATGGAATAAGGGCGTGCAGCGAGTTGGAAGTCCTCGGGCTTTG
GGAAGGAGGCTCCGTGGGAGGCCATGGGCCGCGTCCGCGAGTTTGGAGCT
TCCTTGTCGGTCCCGCGCGGCATGCCATCTCTCAATTGCCGCAAGATATG
ATCTGAATCGAGATTGATGTAGAAGCCGAGAAAAAAGATGCCGAGTCCCG
CGAGGAAGGTCGGGTGGGAGAGCCAGTGGCCTGGGAAAACGTGGAGCCTG
GAGAGAGAGCGGGCCTGCAGGTAGCTGTTGAGGGAGCAGAAGGTCCAGGC
CATGAGCATTACGCTCAAGGGCATGGGCCTGCTGGGGGCCATTCGGAGGG
GGTAAAGGAAAGCGCGGTTCACATAGTGCAGGAGGAAGAGGCTCACCAGG
GCCCGGTTGGCGACGCTCCTGGTCGCAGCCTTGTCGCCCCACAGCCAGAG
AGCCGCTGTGACGAATACGTTAGGACTCTCCATTAGAAACCAAGCAAGCT
TGGCGTTGACGAGCGGTCCCCATCCGCGGGCCTCAGAGTACCGGCCGTAT
GGAGCTGGGCGCATCATGAGGATAAATGCAGTACCAAAGCCCGAGGCCAG
CATGACGAGGGCCAGGCAAGAGTGAAACAGTGCTTCATCCGCAATACTCA
TTGCGAGCCTTCGTTCCTGTACACTGAAACATACGATATTTCGTTCAAAA
TGTATATCATGATATCATTTGGCTCGCTAGAAGGTATGAAGATGCATTAC
AAGGCATGGCAGCTTCAGGAATACTTCCGTTCCCGAACCGCGCGACTCGT
GTGCCATGTAATGTACGAGTGCTTTTAA
back to top

Coding sequence (CDS) from alignment at CM002463.1:931110..932087-

>rna4566 ID=rna4566|Name=rna4566|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at CM002463.1:931110..932087- (Nannochloropsis gaditana)
AAACCAAGCAAGCTTGGCGTTGACGAGCGGTCCCCATCCGCGGGCCTCAG
AGTACCGGCCGTATGGAGCTGGGCGCATCATGAGGATAAATGCAGTACCA
AAGCCCGAGGCCAGCATGACGAGGGCCAGGCAAGAGTGAAACAGTGCTTC
ATCCGCAATACTCATTGCGAGCCTTCGTTCCTGTACACTGAAACATACGA
TATTTCGTTCAAAATGTATATCATGATATCATTTGGCTCGCTAGAAGGTA
TGAAGATGCATTACAAGGCATGGCAGCTTCAGGAATACTTCCGTTCCCGA
ACCGCGCGACTCGTGTGCCATGTAATGTACGAGTGCTTTTAAAAGCCGAG
AAAAAAGATGCCGAGTCCCGCGAGGAAGGTCGGGTGGGAGAGCCAGTGGC
CTGGGAAAACGTGGAGCCTGGAGAGAGAGCGGGCCTGCAGGTAGCTGTTG
AGGGAGCAGAAGGTCCAGGCCATGAGCATTACGCTCAAGGGCATGGGCCT
GCTGGGGGCCATTCGGAGGGGGTAAAGGAAAGCGCGGTTCACATAGTGCA
GGAGGAAGAGGCTCACCAGGGCCCGGTTGGCGACGCTCCTGGTCGCAGCC
TTATGGTGCCAGGCACGAGGGGCCAAATTGAGCACGGTGAAGGCGGCGAA
TGTCACACTCGCGAGGCTCCCGCCACAGGCGATAGCGAAGCCGAAACCAA
GCAAGCTTGGCGTTGACGAGCGGTCCCCATCCGCGGGCCTCAGAGTACCG
GCCGTATGGAGCTGGGCGCATCATGAGGATAAATGCAGTACCAAAGCCCG
AGGCCAGCATGACGAGGGCCAGGCAAGAGTGAAACAGTGCTTCATCCGCA
ATACTCATTGCGAGCCTTCGTTCCTGTACACTGAAACATACGATATTTCG
TTCAAAATGTATATCATGATATCATTTGGCTCGCTAGAAGGTATGAAGAT
GCATTACAAGGCATGGCAGCTTCAGGAATACTTCCGTTCCCGAACCGCGC
GACTCGTGTGCCATGTAATGTACGAGTGCTTTTAAAAGCCGAGAAAAAAG
ATGCCGAGTCCCGCGAGGAAGGTCGGGTGGGAGAGCCAGTGGCCTGGGAA
AACGTGGAGCCTGGAGAGAGAGCGGGCCTGCAGGTAGCTGTTGAGGGAGC
AGAAGGTCCAGGCCATGAGCATTACGCTCAAGGGCATGGGCCTGCTGGGG
GCCATTCGGAGGGGGTAAAGGAAAGCGCGGTTCACATAGTGCAGGAGGAA
GAGGCTCACCAGGGCCCGGTTGGCGACGCTCCTGGTCGCAGCCTTATGGT
GCCAGGCACGAGGGGCCAAATTGAGCACGGTGAAGGCGGCGAATGTCACA
CTCGCGAGGCTCCCGCCACAGGCGATAGCGAAGCCGAAACCAAGCAAGCT
TGGCGTTGACGAGCGGTCCCCATCCGCGGGCCTCAGAGTACCGGCCGTAT
GGAGCTGGGCGCATCATGAGGATAAATGCAGTACCAAAGCCCGAGGCCAG
CATGACGAGGGCCAGGCAAGAGTGAAACAGTGCTTCATCCGCAATACTCA
TTGCGAGCCTTCGTTCCTGTACACTGAAACATACGATATTTCGTTCAAAA
TGTATATCATGATATCATTTGGCTCGCTAGAAGGTATGAAGATGCATTAC
AAGGCATGGCAGCTTCAGGAATACTTCCGTTCCCGAACCGCGCGACTCGT
GTGCCATGTAATGTACGAGTGCTTTTAAAAGCCGAGAAAAAAGATGCCGA
GTCCCGCGAGGAAGGTCGGGTGGGAGAGCCAGTGGCCTGGGAAAACGTGG
AGCCTGGAGAGAGAGCGGGCCTGCAGGTAGCTGTTGAGGGAGCAGAAGGT
CCAGGCCATGAGCATTACGCTCAAGGGCATGGGCCTGCTGGGGGCCATTC
GGAGGGGGTAAAGGAAAGCGCGGTTCACATAGTGCAGGAGGAAGAGGCTC
ACCAGGGCCCGGTTGGCGACGCTCCTGGTCGCAGCCTTATGGTGCCAGGC
ACGAGGGGCCAAATTGAGCACGGTGAAGGCGGCGAATGTCACACTCGCGA
GGCTCCCGCCACAGGCGATAGCGAAGCCG
back to top
Synonyms
Publications