rna4564, rna4564 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4564
Unique Name	rna4564
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2966
Alignment location	CM002463.1:926496..929237 +

Link to JBrowse

Properties


Property Name	Value
Product	pentatricopeptide repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100014g42.9315.mrna
Orig protein id	gnl\|cribi\|Naga_100014g42.9315
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:926496..929237 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g42	gene4403	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4564	rna4564-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26138.1	cds4552	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:926496..929237+
coding sequence from alignment at CM002463.1:926496..929237+

mRNA sequence

>rna4564 ID=rna4564|Name=rna4564|organism=Nannochloropsis gaditana|type=mRNA|length=2966bp
AGCATGGAGACCCCTGTGTGCATATATGCTGATCCCTCTGGCAAAAATGG
TTCTTTGGATAAAACTTCTCCCATGCGAGCCCCAGGACGCGAGGGAGGTC
ATATTAGAGAGAAACTCGAGGTACTTACCTCGGCTGAGCCTTCAGGCTCC
CCTCCTAAGACGGAAGCGAAATGCTCAATCCCACTCCGACGATTTACGCC
TAGTGGACGGGTAACATCCGTCGATTTAACGCCCGATGGGGCCTACGTTA
TTGCCGGCTGCAGCGATGGCACTCTTCGGCTCTACTCGATGCTGCACCCG
TCCTGGGGTAGCGAGGGGCTGCTTCTGGGCCAAATTCACGCCAAAGGGCT
CATCACTAATCTTATATTTCATGTGGAGGTGGCAGATGACGGGCGCTTCG
CATTTGCGGGGGTGCTGCGGGGTTCAGTGGAAATGTTCGCTTATGACCTG
ACACGGCTGCCTCGAGGGCATTTCGGTGAGGGCCTGGATGCCGGGGGCGA
AGAAAACGAAGACGTGAATCTCAGCAAGGCCGCTGCAGAATTATTGATCG
AATGTCACACCAATTTGGACGCTAAATTGCGAGGGTTTGGAGCGGTGACC
CGCGTCGCCCCCACGCGAGCCGCATCTGGTCTCGGTGCTTGGGAGATGGA
GTCAGAGGCAGAGCCACCGGAGTATCGTCTCATTTGCGGTCTTGGCATTA
AAAATCTTCACATTTGGCGCTTTCAACAAGGTAGTCAGGTGGAATGCTCG
GCGCCCACGTGGGAATGCATTTTCGACTTGGCTTCGAACGGTATGAGCAT
CGAGCTCCTGACAGTGCGAGCGGGAGGATTAGAGGCAGTTTCTAAAAGCT
GTGGACAGAACTTACGAGTGTGGGATTTATCCTCTTTGGAAAAAAAGGAC
AGGGCCCCATACACGGATATCCTTAACACGCAAGATATAAGGGCCGTCTG
CGGGGACTATGCCTTCGGCGGCACGTGCCAGCTCTCCTTAGTGCGCTTAG
ACGCCTGCTGCGAGCTCAACCGCATGGAGCTCCCACTTCCCACAACGGTG
AGCTCCAAAGCGCTATCGGGCGGCAAGGCCAAGCGTCGCCAACTTTGCTC
GGTGAAAGACGTGGTCGGTACCCACGGGGAGGGGACGCAGGGGGGTCGAG
TCCTGGTCGTCTGCTCCGATGGGGGGGTCCACTGCTATGAGAACACGGGC
GCCACCTCGGCAACTGGGAAGCTGGTGCCGGTGCACAGTCTGACCACGGA
GGTGGACGAGGATGTGAGCTTCTCCCTCGCTTTGGTGGGGAGCCCCGAGA
TGGCAACCCCTGTAGTGATGCAGACTCGCTGGCTGGCGGACGAGAACTGC
GGCGAGATCACGGTGGAGCCCCTGCGACTGGATCAGGCGAAGGAGGAGGC
AGTCGCCGTACGCCGGAGAGCGCTGGGACAATTGGAACCCAACAAAGTCG
GCAGGCAAGGATGCAGGGAGGGGGACGGTGGCGTCGCCAAAGGGAAGGGC
CCGTCAAAAGGACACAGCCGCGGCAGCATCGGCAACTGCCCGTTAATGAG
CCCTGTGGACGCACTGGCCCCCAAGCTACAGAGCGGCGCATCAACAGTGA
CGCCTTGCAGAGGCAACAACCCCCGCGGTGCACTCCCACAGGGCCCCGCC
CCGGCATCGGTCAAAAAGCCGGCTACCAAGAAACGTTCCAAGTCCCTTCC
TTCGCATGGGGGACATGCCTGCGAAAAGCCATCTATTGAGGATTTTAAGG
TGGGTGTGGCGGTAAAAGATGCGTCAGAAACAAGCGCATCGGTAACTTCA
TCGGGACTCGTTGCAATCAAGTCCTCAGTGCCGATGCGCCGATCCGCCCT
AGTAGCTCCCCCGCTGGCCCACTCACGTGCTGCGGCAGCTTCCGTTAGAG
CGCCCCCTTTAGCAGGTGTGCAACCACATCATCCCCTCAAACGCAGGCCT
TACGATCCCTTTGCACCTGTCACACGACCAAAGCGGGGCAAGAACGCGTA
CGAAGGTCCGTCGAAAGCCATGAGGGATTTGGAGGCGAAACGTGCGGCGG
AGGAGGCTGGCAGCAAGACACAAGACTTCTTTCTGGAGCGTGTCGCTCGC
GAGGACATATTGCGCGAGATGCGTATTGCTTCAGTGCTGGAGGCTCGTCG
TGAACGCATTCTTGCTACAACAAGCGGTGGGTGGGACGAGCAAACGCCCT
CTTTTGTCGAGGCGGGGCCTTTCTCTACTGTCACGACATGGGGGGGTTTG
CGTGAAAAGCACCGTCGCGACACAGAGAACTTGAGGCTGAACTTCAAAGC
GGAACATGACCGGTTGCGAAGCCGTTTTCTGGAAGCTGTGGAGCGTGAGC
GCCTCATGTTTCACATACAGAAGCATGCCTTGCCTTCCTGTGTACGGGAC
CCTCTCGGCTTCCTGTGGTGGCACAGCTCTCGGCTCCCCATTAAGAAGCA
GTGGGGACGTTACAGAGCCTTTCCACAACAATCACTAGAGGTTATGGCCT
TGACAGGCCAGCCGGATGTTGCTAATCGCCGATTTTCCCTTTCGGGGGTC
ATAGCTAGCTTCAAGGCACAAGTCGCTCGCACACTGCGTCGGCAGCAAGT
GGAGGCGGACGCGCTAGCAGCCTTGCAGTGCATGGACTTGCCATTCATAC
GCCCCTCGCCCATTCAAGTCTCCTATCCTTATGTAGACGACTTCGCAATT
CAAGATCCTGTAGGACAGCACCTGAAGCTGGCAGAGAAGGATGACGATGC
TGCAAATGTGTTGCCGGACGCAAACACGACACACGCGTCAGCTGCGAAGG
TTGGTGGGGCTAATGTTGCACGGCACCCGGCTTCAGTCACGCCTTCTGTG
ACCACGTAGGCTTTCCACGAGCACGTACGGAAAAGACTTAGTGAATAGGC
TTACTAAACTTAACCGAGTAAGGTATCAAAAAAGTGGGAAAAGCTAGAAT
ATCAGGCATTTTGACG

protein sequence of rna4564

>rna4564-protein ID=rna4564-protein|Name=rna4564|organism=Nannochloropsis gaditana|type=polypeptide|length=781bp
MRLLLSLLTVGALSRRTTTYAFRFIPFLATRPAPPHLCSISALRFSNPYR
HESREKTGQSRMPHPSPTTLLPHAQQPPHGKGKSPSPLVEWSLRRVGTTP
AIDLLENALEEDRLTNLGVGDDEGLLTAALKECRSIGDGRRALRYLGMVN
DYQLREIDCVSTIYACAAEGLTDEAVSVFRRLARRKRGPVRAWGPPCYVA
IIVACSKGGRPEDAVAFFSEMGVNGEPAPDAACYAAMMETYRRSGRASEA
LALLEDLKACGMAEAPGRPAPRGSHLVLAATIRALTDLGRPAEALERFDQ
ARGLASGVIPDGGCYGAALEAAADLGDWRRALHLIEEMGREVEYKNVRGT
FVRRQLRVGRQHYVAAMRACAKAGESEQALALLRDMRTRGGVRPDEKCHR
WALFACCQDAQWRRAYAMLLEGPAPPSCDAPWTLPCYTTTMRALVRVGQT
EEVLALWDLLLVRGLAPDAGTGDIALSVAGKQKKWELVKAIFDELQGRGV
EPYEAGIGVVIEGLCQQGQLKEALAFLRQVSAPNVIMFTSVLSGMGRAGE
LAGALALLEEMETKAGVTPDHVALTCLVDACLKAGDVENAGRLASRLEAN
ALAQVDCPGQAEGMQEDERSFGVRVRTMLEQGYWEDAWRTIKDAETVEGH
VPVPAMSYSVLLNAAAKEGRWRDALEMLLHMREKRGLEPSTVDLSSAINA
CRVGGETRTALKLLELLDLRRRARGRLGKRAAEPCHRNGGKVLPRREVAE
SEEDLSPYQVTYGLVLDLLARQASSASQTPP

mRNA from alignment at CM002463.1:926496..929237+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4564 ID=rna4564|Name=rna4564|organism=Nannochloropsis gaditana|type=mRNA|length=2742bp|location=Sequence derived from alignment at CM002463.1:926496..929237+ (Nannochloropsis gaditana)
TCATTTTATTGTGGGCTCTGGTATTCTTCATATCTTCAACATCAGGTTTG
TAATAAATGGTAATCCCCAGAGGCCAAAGCGTGAATGAGTAGGTGCTTGT
GGTTTAACTCGAGAACGCGCGGCTAATTGCGACTCTACCTCCCCTGCCCT
ACGCTCTCTGCCTCTACGACTGCTCAAGCACTCTATATTACCGCATAACA
CAAGTAGTACAGGCATTCATTGACATGCAGCGGAAAATTATGTTGCCAGG
AACAGAGGCTCCTGTTTTTGTTGCCCATTGACGACCAAACAACCAGCAtg
cgcctccttctttccctcctcaccgttGGGGCGCTCTCAAGAAGGACGAC
AACCTATGCCTTCAgattcatccccttcctcgccactcgtccagcaccac
cgcaTCTCTGTTCAATATCCGCTTTACGTTTTTCCAACCCATACCGCCAT
GAATCCAGAGAGAAGACAGGTCAGAGTCGGATGCCCCATCCATCTCCTAC
AACCCTCCTGCCGCACGCACAACAGCCGCCACATGGGAAGGGCAAATCTC
CATCACCCCTCGTTGAATGGTCGTTAAGGCGCGTAGGAACAACCCCTGCG
ATCGATCTTCTGGAAAAcgctctggaggaggatcgaTTAACCAATCTTGG
GGTGGGTGACGACGAAGGGCTCCTCACGGCCGCGCTCAAAGAATGCCGCT
CTATTGGCGACGGTAGACGAGCACTCAGGTATCTAGGCATGGTAAACGAT
TATCAACTTCGAGAGATAGATTGCGTGTCCACAATCTATGCATGTGCGGC
CGAGGGTCTGACGGACGAGGCTGTCAGTGTCTTCCGTCGgctggcaagga
ggaagagagggcccGTCCGAGCTTGGGGTCCGCCGTGTTACGTCGCCATC
ATCGTGGCCTGCAGCAAGGGCGGTCGACCAGAGGATGCGGTGGCGTTTTT
TTCAGAGATGGGGGTGAACGGGGAGCCGGCCCCAGACGCAGCCTGCTACG
CCGCCATGATGGAGACCTACCGCCGGTCCGGGCGCGCCTCCGAGGCCTTG
GCCCTCCTGGAGGACCTGAAGGCGTGCGGGATGGCCGAGGCTCCTGGGAG
GCCGGCACCTCGAGGGTCACACTTGGTCCTGGCCGCCACGATCCGGGCCC
TCACGGACCTGGGCCGCCCAGCCGAAGCCTTGGAGCGCTTCGACCAGGCT
CGGGGGCTGGCGTCAGGGGTCATTCCGGACGGCGGGTGCTACggggcggc
gctggaggccGCGGCCGACCTGGGCGACTGGAGACGGGCGCTGCATTTAA
TCGAGGAGATGGGTCGGGAAGTGGAATACAAGAACGTTCGAGGCACGTTC
GTCCGGCGGCAGCTCCGGGTCGGGCGTCAGCATTATGTGGCGGCGATGAG
GGCCTGTGCCAAAGCAGGGGAGAGCGAGCAGGCGCTGGCGCTCCTACGAG
ACATGCGGACGCGCGGTGGGGTCCGACCAGATGAGAAGTGCCATCGGTGG
GCCCTCTTTGCCTGTTGTCAAGACGCACAGTGGCGCCGCGCCTACGCGAT
GCTCCTGGagggccccgccccgccatccTGCGACGCCCCGTGGACCCTGC
CCTGTTACACGACCACCATGCGGGCACTAGTCAGGGTAGGTCAGAcagag
gaggtgctggccctCTGGgatctccttctcgtccgaGGATTGGCTCCTGA
CGCGGGCACGGGGGACATCGCCCTGAGCGTGGCTGGGAAGCAGAAAAAGT
GGGAGCTCGTCAAGGCCATATTCGACGAGCTCCAGGGCCGCGGAGTGGAG
CCTTACGAGGCCGGGATAGGCGTCGTCATCGAAGGTCTGTGTCAGCAGGG
GCAGCTAAAGGAAGCTCTCGCTTTTTTGCGGCAGGTGTCGGCGCCCAACG
TGATCATGTTCACCAGCGTCTTGTCCGGCATGGGCCGAGCGGGGGAGCTT
GCGGGCGCGCTGGCCttgttggaggagatggagacaAAGGCAGGCGTGAC
GCCGGACCACGTGGCGTTGACCTGTCTCGTGGACGCGTGCCTGAAAGCGG
GTGACGTGGAGAACGCCGGCCGGCTCGCCTCCCGCCTGGAGGCAAACGCA
TTGGCGCAGGTCGATTGCCCGGGCCAGGCCGAGGggatgcaggaggacga
gcgAAGTTTTGGGGTGCGTGTGCGGACAATGCTGGAGCAAGGGTACTGGG
AGGACGCTTGGCGCACCATCAAGGATGCGGAGACAGTGGAGGGCCACGTC
CCGGTCCCCGCCATGTCCTACAGCGTGCTCTTGAACGCCGCtgcgaagga
agggcgcTGGCGAGACGCATTGGAAATGCTCCTGCACATGCGTGAGAAGC
GAGGACTGGAGCCGAGTACGGTTGACCTGTCATCGGCTATCAACGCGTGT
cgggtagggggggaaacgCGGACGGCCTTAAAGCTCCTCGAACTCCTCGA
CCTCCGACGCCGGGCACGGGGCCGCCTCGGGAAGCGCGCGGCGGAGCCAT
GCCACAGAAATGGCGGGAAAGTCTTGCCGCGAAGAGAGGTggcggagagc
gaggaagatCTCAGTCCCTACCAAGTTACTTACGGATTGGTCTTGGACCT
TCTCGCGAGGCaagcctcctctgcctcccagACCCCTCCTTGAGGGGCGA
GACGTTTGACGGGAAAGCCTCCATTTCAAGTGTACAAAGAGCACAAACGG
AAGATTGAAAAATCGATAAGACAAGATACAAGTACGAAAGCA

Coding sequence (CDS) from alignment at CM002463.1:926496..929237+

>rna4564 ID=rna4564|Name=rna4564|organism=Nannochloropsis gaditana|type=CDS|length=2346bp|location=Sequence derived from alignment at CM002463.1:926496..929237+ (Nannochloropsis gaditana)
AtgcgcctccttctttccctcctcaccgttGGGGCGCTCTCAAGAAGGAC
GACAACCTATGCCTTCAgattcatccccttcctcgccactcgtccagcac
caccgcaTCTCTGTTCAATATCCGCTTTACGTTTTTCCAACCCATACCGC
CATGAATCCAGAGAGAAGACAGGTCAGAGTCGGATGCCCCATCCATCTCC
TACAACCCTCCTGCCGCACGCACAACAGCCGCCACATGGGAAGGGCAAAT
CTCCATCACCCCTCGTTGAATGGTCGTTAAGGCGCGTAGGAACAACCCCT
GCGATCGATCTTCTGGAAAAcgctctggaggaggatcgaTTAACCAATCT
TGGGGTGGGTGACGACGAAGGGCTCCTCACGGCCGCGCTCAAAGAATGCC
GCTCTATTGGCGACGGTAGACGAGCACTCAGGTATCTAGGCATGGTAAAC
GATTATCAACTTCGAGAGATAGATTGCGTGTCCACAATCTATGCATGTGC
GGCCGAGGGTCTGACGGACGAGGCTGTCAGTGTCTTCCGTCGgctggcaa
ggaggaagagagggcccGTCCGAGCTTGGGGTCCGCCGTGTTACGTCGCC
ATCATCGTGGCCTGCAGCAAGGGCGGTCGACCAGAGGATGCGGTGGCGTT
TTTTTCAGAGATGGGGGTGAACGGGGAGCCGGCCCCAGACGCAGCCTGCT
ACGCCGCCATGATGGAGACCTACCGCCGGTCCGGGCGCGCCTCCGAGGCC
TTGGCCCTCCTGGAGGACCTGAAGGCGTGCGGGATGGCCGAGGCTCCTGG
GAGGCCGGCACCTCGAGGGTCACACTTGGTCCTGGCCGCCACGATCCGGG
CCCTCACGGACCTGGGCCGCCCAGCCGAAGCCTTGGAGCGCTTCGACCAG
GCTCGGGGGCTGGCGTCAGGGGTCATTCCGGACGGCGGGTGCTACggggc
ggcgctggaggccGCGGCCGACCTGGGCGACTGGAGACGGGCGCTGCATT
TAATCGAGGAGATGGGTCGGGAAGTGGAATACAAGAACGTTCGAGGCACG
TTCGTCCGGCGGCAGCTCCGGGTCGGGCGTCAGCATTATGTGGCGGCGAT
GAGGGCCTGTGCCAAAGCAGGGGAGAGCGAGCAGGCGCTGGCGCTCCTAC
GAGACATGCGGACGCGCGGTGGGGTCCGACCAGATGAGAAGTGCCATCGG
TGGGCCCTCTTTGCCTGTTGTCAAGACGCACAGTGGCGCCGCGCCTACGC
GATGCTCCTGGagggccccgccccgccatccTGCGACGCCCCGTGGACCC
TGCCCTGTTACACGACCACCATGCGGGCACTAGTCAGGGTAGGTCAGAca
gaggaggtgctggccctCTGGgatctccttctcgtccgaGGATTGGCTCC
TGACGCGGGCACGGGGGACATCGCCCTGAGCGTGGCTGGGAAGCAGAAAA
AGTGGGAGCTCGTCAAGGCCATATTCGACGAGCTCCAGGGCCGCGGAGTG
GAGCCTTACGAGGCCGGGATAGGCGTCGTCATCGAAGGTCTGTGTCAGCA
GGGGCAGCTAAAGGAAGCTCTCGCTTTTTTGCGGCAGGTGTCGGCGCCCA
ACGTGATCATGTTCACCAGCGTCTTGTCCGGCATGGGCCGAGCGGGGGAG
CTTGCGGGCGCGCTGGCCttgttggaggagatggagacaAAGGCAGGCGT
GACGCCGGACCACGTGGCGTTGACCTGTCTCGTGGACGCGTGCCTGAAAG
CGGGTGACGTGGAGAACGCCGGCCGGCTCGCCTCCCGCCTGGAGGCAAAC
GCATTGGCGCAGGTCGATTGCCCGGGCCAGGCCGAGGggatgcaggagga
cgagcgAAGTTTTGGGGTGCGTGTGCGGACAATGCTGGAGCAAGGGTACT
GGGAGGACGCTTGGCGCACCATCAAGGATGCGGAGACAGTGGAGGGCCAC
GTCCCGGTCCCCGCCATGTCCTACAGCGTGCTCTTGAACGCCGCtgcgaa
ggaagggcgcTGGCGAGACGCATTGGAAATGCTCCTGCACATGCGTGAGA
AGCGAGGACTGGAGCCGAGTACGGTTGACCTGTCATCGGCTATCAACGCG
TGTcgggtagggggggaaacgCGGACGGCCTTAAAGCTCCTCGAACTCCT
CGACCTCCGACGCCGGGCACGGGGCCGCCTCGGGAAGCGCGCGGCGGAGC
CATGCCACAGAAATGGCGGGAAAGTCTTGCCGCGAAGAGAGGTggcggag
agcgaggaagatCTCAGTCCCTACCAAGTTACTTACGGATTGGTCTTGGA
CCTTCTCGCGAGGCaagcctcctctgcctcccagACCCCTCCTTGA

Synonyms

Publications