rna4556, rna4556 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4556
Unique Name	rna4556
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2814
Alignment location	CM002463.1:909023..911548 +

Link to JBrowse

Properties


Property Name	Value
Product	flagellar outer dynein arm-docking complex protein 1
Orig transcript id	gnl\|cribi\|Naga_100014g35.9265.mrna
Orig protein id	gnl\|cribi\|Naga_100014g35.9265
Gene	ODA1
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:909023..911548 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ODA1	gene4396	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4556	rna4556-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26088.1	cds4544	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:909023..911548+
coding sequence from alignment at CM002463.1:909023..911548+

mRNA sequence

>rna4556 ID=rna4556|Name=rna4556|organism=Nannochloropsis gaditana|type=mRNA|length=2814bp
ATGCAGTACCATGCGCTGAGCCTAGCTAAGGAGAACCCCACCATTCAAGT
TTCTCTGGTTGGCTATCGGGGTGAACAGTGTATCCCTGCTGTTAAAAACA
ACCCGCGCATCCAATTATGTTACGTCGACCCTTTTGCGAGTGAGGCGCTC
CGCAAAGCAAGCTTCCTAATCTTCGCGGCCGCCAAAGTTATCGCCTTGAT
ACTTCAGCTTATAAAGCTCCTTCTCTTCGAGCTGAAGACACCCCCAGCTT
TAATCCTTGTACAAAACCCGCCCAGCATACCCACACTTTTCATCGGCTGG
CTGGTGGCCAGATTGCGCGGGTCGATGTTTGTGATTGATTGGCATAATTT
CGGGTTCTCTATCCTCGCGCACGCTCCTGAACGCACAAGAAGACATCCTA
TGGTGCGGATTGCCAGATATTACGAGCACTTGTTTGGGCGAATGGCAGAC
AAGCATCTATGTGTGACCAACGGCATGCGGAAATGGCTAAACGATAATTT
TGGCGTTCAAGCTCATGTACTGCACGACCGCCCACCATCATTTTTTGGTC
CTACGTCCCTTGCTGGCCAGCATGAGCTTTTCATGAGAATACGGAGGCAA
TTACGACATTGGAAGGTAGAAGAAAAATATACCGCAGCAACTGGCATTGT
CGTGGGGGAAGGGGAGACTCTTTTCACGACTCTTATTGGGTCTGCACAAA
AGTCCACGAGGGTTAACAATGCTGGCAGCAGGCTTAAGACAGACATAGTG
CTGCGAGACATCAACCGGCCCGCTTTACTGGTGAGTTCCACCAGCTGGAC
GGAAGATGAGGATTTTAGAGTGCTCTTAGCGGCTTTGCGGGATTTGGACG
CGAAATGGGCAGTGAACCCGTCCCCATCAACCGGGACAAGGGGGTCCAAC
GCCTCGAAACCTTTTGTTGTGGTGGTGGTGACAGGAAAAGGGCCGTTAAA
GGCCCACTACGAGGCATTGATTCGTGCTCATCCACTTCAACGGGTTGCCA
TTTGCACAATGTGGCTAGAGGCAGAGGATTATCCCAAATTGATCGGATCG
GCAGACTTGGGCGTGTCTCTGCATACCTCAACCTCTGGAGTCGACTTACC
CATGAAAGTGCTTGATATGTTTGGCTGCCAGGTACCAGTGTGTGCGATGG
GCTTTCCTTCTTTGTCTGAACTGGTGCGAGACAATGTAAACGGTTTTGTT
TTCCAAACAGCCACGGAGCTGGCCGTGTGCTTGGATACCCTTTTGGGGCG
CTTCCCGATGGACACATCTAAGCTGGATCAGTTGCGAGCCGGTGTGAAGG
GCATGGAAAGATGGGAGGGGCATTGGCGGAGACATGCGGCATCATATCTG
GCAATAAAGGAAGTGACCAAAAGCTGGTGTGTGTTTGGGGCTTGGTTCGG
GCTGTTACTGGCATTTGTGTTTGCCGCCATTACTGTCAAGCTTTCTTCCG
TCCGCCCCTCCATCATCGACCCCACCACCTCCTGCCCCGGTCTTCATCGT
GGATCTTACGGCCTTGCCCCGTCATCCATCATAGGGAGGCCGTCTGATCT
CTGGCGCATTCCACTCTTTTGCGTTGCTGCGACCGGGACCCTTTTTTTCT
CATCTGGGGTGACTTCTCTAGCTGCCACCCTTTGGCCAACGAGCAGCACA
AGTTTTTTACCACTCTACTTCCTCCGGAATAACCCTTGCTCAGCCCTCCC
ACCTATGAGCGGGACAGGTGAGGGCACCAGCGGAAGCCGTGCGCGTGTGT
ACGCGAACGTGAATGTGCAGCGACCTAGAGACTATTGGGACTATGAGGGT
CTCACGGTGACATGGGGAGATCAAGAGGATTACGAGGTGGTGCGAAAGAT
CGGTCGCGGCAAATACAGCGAGGTCTTCGAGGGCGTGAATGCAGCGAATG
GGACGCGATGTGTGGTGAAGATTCTTAAGCCCGTCAAGAAGAAAAAGATC
AAGCGCGAGATTAAGATCTTACAGAATCTGTGCGGAGGTACCAACATCAT
CGAGCTGCTGGACGTGGTCCGGGACCCGCAATCCAAGACCCCCTCGCTCA
TTTTCGAATACATCCACAACACGGACTTCAAGGTCCTGTATCCTACCTTA
TCCGACATGGACATCCGCTACTACATGCTGGAGCTCCTCAAGGCATTGGA
GTACTGCCACTCCAACGGCATCATGCACCGGGACGTGAAGCCCCACAACG
TCATGATCAACCACGAGCGGCGCCAGCTCCGGCTCATTGACTGGGGCCTG
GCCGAGTTCTACCATCCAGGTAGGGAATATAATGTGCGCGTAGCCTCGAG
ATATTTCAAAGGACCGGAGCTGCTGGTGGACTTCCAAGAGTACGACTACT
CGTTGGACATGTGGAGTCTGGGTTGCATGCTCGCGGGCATGGTTTTCAGG
AAAGAGCCCTTCTTCCACGGGCACAACAACTACGACCAGCTGGTGAAGAT
CGCCAAGGTGCTGGGCACGGACGATCTCTTCGCCTATTTGGAGAAGTACG
ACCTGGAGCTGGACCCCCAATTCGACGGCATTCTCGGCCGGCACTCGAAG
AAGCCGTGGCAGAAGTTCGTCACCCCCGAGAATCGGGCCCTGGTCTCGGA
CGAGGCCATCGACTTCATCGGCCAACTTCTCCGCTACGACCATCAAGAGC
GACTCACAGCGCAAGAAGCCATGGCGCACCCCTACTTTGCGCCCGTGCGG
GCGAGTGCCGGGACGGGGGGCGCGGGGGGAGCGGCCGCCGCGACCACAAG
CGAGGCGACCACCTCGAGCAACAAGAGCAGTGGGTCGTCGTCGGCAGCCT
CTTCCTCAACTTGA

protein sequence of rna4556

>rna4556-protein ID=rna4556-protein|Name=rna4556|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MDRVVYDNVYKRLERCLHEKKKEMAQVIEDAKRVCVARDKAKSEINNLKQ
QAEKEKAQFQREWAELGRLIEEDRQARDSIQKTMEAERRSQRLSEQSHRS
KSPAGRTGLVTSKPRDNSSGNSPMDVNKQSKGDESGIPGEVVSPDRNALN
EKSSSATASAVPLSSSGATTAPLLSLTPEKIRLYEEVFAQVQEATGLTDI
EEMVTKFLEAEEKNFSLFNYVNDLNTEIDELESFIGENKNEIEKNKDQGS
NADSRQKRLARAGEERQQQIKAKADEYELKYIAATKAINQLKTSIHSIFS
RLGCATTTPMEEILGNQGVTESNMMQYLGFIEQRTIEILQLYRARQSRDA
TSSLNEAAHSSSTPFRITVQPPSLSEIERDEEAATQPHAQATKFRGYTVS
KTIKSINHPSFEEDDAEDRPLTRQELQEKAVSSAVGKSKQQKSSMRPCDE
RQAI

mRNA from alignment at CM002463.1:909023..911548+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4556 ID=rna4556|Name=rna4556|organism=Nannochloropsis gaditana|type=mRNA|length=2526bp|location=Sequence derived from alignment at CM002463.1:909023..911548+ (Nannochloropsis gaditana)
AGAGGGAATTCTTCTTGAATATCTATCCCTACTCAGACAGAAAGTGTGCT
CGGGCATCAATTGTGCCTTCTAGAGAAGAAAGTAAGAAGTTACCTTGAGA
GGAATGTCCTCGACGGCAACCCCTCGTGCTCTCACACGAGACAAACCGGG
GACCTTAAGGAGTAGCCTTTCGGCTAAATTGAACAATAAAGCCAGAGCTA
TAACACCCACACGCGGAAAACAATCGATAAGAGAAAATACGCCGCTGAAA
CGAGTCCAAAAAGAGGTAGGGTGTGGTGGTGAAGGTAATTCGATTATTTC
GTTCTTTCAATTCGACACGCGTTTCTCAATTTCTTATTTAAAGCGTCAGG
ACCTGGATGCCATCAATCATGCAAATGCATTGATCCGCCTTGATGCAATT
CAAGGGGCTCGTGAGGCCAAGATCAATGTGAAGACGGGTGTGTCAAAAGA
GGTGGCGCGCCTTCAAGATCAGGCAGCAATGTACTTCAGGCGTATTCAGG
TGGAAAGGGTACGAAGCGCAATAAAACCATCACAATATCTAATCAGAAAC
TCACTCGCTAGCTTTATATTTGCACCATAGCGCAAGGTGGCAGAGCTAGA
AGAGCAAGTAAATACTGCACAAATGAAAGTCCTCGAGCAAAAACAGAAGA
TGGGAGGTGTAAATGCGTCAAAAGAAAATGACGCAATACTCGCAAAGCAA
ACTCAACTCCTCGAAAATCGACTAGATAAAACGTTGGTGAAATTTAATCA
GGCTCTAGGAGAGGTGAGTGTATAAAAAGTGCAACCTTAAATGTTCTTAA
TGTGCAATTTTAAATGCGCGAAAATCTGGAGATGACCAGGGCAACGACCT
GTAGAATTGCACAGGAAACAACATTCGGACGAAGTGCAGAGCATACTGTG
ACGCCTTCTCCAAAATGAACAGGTGTACAACTATCCTCATTCCTTCTGTA
TCTCTCATGTACACACATGTGCATGCGCACGCTTGCGTGTTGACTTATCA
ATGACACATTAACAGAATAAGAGGCTTAGAGAACGAATCGACCGCCTACG
TATGGATCGAGTTGTCTACGACAATGTTTACAAGCGACTAGAACGATGCC
TTcacgaaaagaagaaagagatggcGCAAGTTATAGAGGACGCAAAACGG
GTCTGCGTCGCGAGGGATAAGGCAAAGAGCGAAATTAATAATCTTAAGCA
GCAGgctgaaaaagaaaaagcccAATTTCAAAGAGAGTGGGCAGAGTTGG
GCCGTTTGATTGAAGAGGATCGGCAGGCTAGGGATTCCATACAGAAAACG
ATGGAAGCCGAGCGACGGAGCCAACGTCTCTCGGAGCAGTCGCATCGTTC
CAAGAGCCCAGCAGGAAGAACTGGCCTGGTGACAAGTAAGCCAAGAGATA
ACTCCTCTGGTAATTCACCAATGGATGTGAACAAGCAATCAAAAGGGGAT
GAGAGTGGCATTCCTGGTGAAGTCGTCAGTCCCGATAGGAACGCTCTCAA
TGAGAAGTCAAGCAGCGCCACTGCATCCGCAGTCCCACTATCATCATCCG
GTGCAACGACGGCTCCTTTACTGTCCCTCACACCCGAGAAAATACGACTA
TATGAAGAGGTTTTCGCCCAAGTACAAGAAGCAACGGGACTCACTGATAT
TGAAGAGATGGTCACGAAATTTCTTGAAGCTGAAGAGAAGAATTTTTCGC
TGTTTAACTATGTCAATGACCTAAACACGGAAATCGATGAACTGGAATCC
TTCATTGGAGAGAATAAAAATGAAATAGAGAAAAATAAAGACCAGGGTAG
CAACGCTGACTCCAGGCAGAAACGCTTGGCCCGGGCGGGTGAAGAACGCC
AGCAGCAAATCAAAGCGAAAGCGGATGAGTACGAGCTCAAGTACATTGCC
GCCACCAAAGCCATTAATCAGCTAAAAACGAGCATACACTCAATCTTTTC
ACGGTTAGGTTGTGCGACTACAACCCCCATGGAGGAGATTCTGGGAAACC
AGGGCGTAACAGAGTCAAATATGATGCAATATTTGGGCTTCATCGAACAG
CGTACTATCGAAATCCTTCAACTCTATCGTGCGAGACAGAGCAGAGATGC
TACTAGCTCATTAAATGAAGCCGCTCACTCATCATCAACACCATTTCGCA
TTACCgtccagcctccctccctatcggAAATAGAGCGTGACGAGGAGGCT
GCGACGCAGCCGCATGCCCAAGCCACCAAATTCAGAGGTTATACTGTGAG
TAAGACTATCAAAAGCATAAATCATCCATCATTTGAAGAGGATGATGCAG
AAGATCGGCCCTTAACGAGGCAAGAGTTGCAGGAAAAAGCCGTATCAAGT
GCTGTGGGTAAATCGAAGCAGCAGAAAAGCAGTATGAGGCCTTGTGATGA
ACGACAAGCCATTTAAAGCCAAGAAAAGATGTCCTAAAATTTACACATTT
CTATGAAAGGTGTTTCTCCCCATCGTTTATTTAAGTCACGACGAATTGGA
ATGTGCGTCTTGGCATGTGTATCAGG

Coding sequence (CDS) from alignment at CM002463.1:909023..911548+

>rna4556 ID=rna4556|Name=rna4556|organism=Nannochloropsis gaditana|type=CDS|length=1365bp|location=Sequence derived from alignment at CM002463.1:909023..911548+ (Nannochloropsis gaditana)
ATGGATCGAGTTGTCTACGACAATGTTTACAAGCGACTAGAACGATGCCT
TcacgaaaagaagaaagagatggcGCAAGTTATAGAGGACGCAAAACGGG
TCTGCGTCGCGAGGGATAAGGCAAAGAGCGAAATTAATAATCTTAAGCAG
CAGgctgaaaaagaaaaagcccAATTTCAAAGAGAGTGGGCAGAGTTGGG
CCGTTTGATTGAAGAGGATCGGCAGGCTAGGGATTCCATACAGAAAACGA
TGGAAGCCGAGCGACGGAGCCAACGTCTCTCGGAGCAGTCGCATCGTTCC
AAGAGCCCAGCAGGAAGAACTGGCCTGGTGACAAGTAAGCCAAGAGATAA
CTCCTCTGGTAATTCACCAATGGATGTGAACAAGCAATCAAAAGGGGATG
AGAGTGGCATTCCTGGTGAAGTCGTCAGTCCCGATAGGAACGCTCTCAAT
GAGAAGTCAAGCAGCGCCACTGCATCCGCAGTCCCACTATCATCATCCGG
TGCAACGACGGCTCCTTTACTGTCCCTCACACCCGAGAAAATACGACTAT
ATGAAGAGGTTTTCGCCCAAGTACAAGAAGCAACGGGACTCACTGATATT
GAAGAGATGGTCACGAAATTTCTTGAAGCTGAAGAGAAGAATTTTTCGCT
GTTTAACTATGTCAATGACCTAAACACGGAAATCGATGAACTGGAATCCT
TCATTGGAGAGAATAAAAATGAAATAGAGAAAAATAAAGACCAGGGTAGC
AACGCTGACTCCAGGCAGAAACGCTTGGCCCGGGCGGGTGAAGAACGCCA
GCAGCAAATCAAAGCGAAAGCGGATGAGTACGAGCTCAAGTACATTGCCG
CCACCAAAGCCATTAATCAGCTAAAAACGAGCATACACTCAATCTTTTCA
CGGTTAGGTTGTGCGACTACAACCCCCATGGAGGAGATTCTGGGAAACCA
GGGCGTAACAGAGTCAAATATGATGCAATATTTGGGCTTCATCGAACAGC
GTACTATCGAAATCCTTCAACTCTATCGTGCGAGACAGAGCAGAGATGCT
ACTAGCTCATTAAATGAAGCCGCTCACTCATCATCAACACCATTTCGCAT
TACCgtccagcctccctccctatcggAAATAGAGCGTGACGAGGAGGCTG
CGACGCAGCCGCATGCCCAAGCCACCAAATTCAGAGGTTATACTGTGAGT
AAGACTATCAAAAGCATAAATCATCCATCATTTGAAGAGGATGATGCAGA
AGATCGGCCCTTAACGAGGCAAGAGTTGCAGGAAAAAGCCGTATCAAGTG
CTGTGGGTAAATCGAAGCAGCAGAAAAGCAGTATGAGGCCTTGTGATGAA
CGACAAGCCATTTAA

Synonyms

Publications