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Properties
| Property Name | Value |
|---|
| Product | mpv17-like protein |
| Orig transcript id | gnl|cribi|Naga_100014g31.9310.mrna |
| Orig protein id | gnl|cribi|Naga_100014g31.9310 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:901233..903535 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4553 ID=rna4553|Name=rna4553|organism=Nannochloropsis gaditana|type=mRNA|length=2640bp
ACACACCCATAGGAATGCGTCAGGAAGCACGGAACAGCGGTCTGCTGGGA
ATATCGACATGTGTGGTGTCGGGCTGTTCTTGCATAGGATCACAGCCGCG
ACAGCTGGACAGGAATCAACGGCGGCCGTGGCCTCTCTCGAGGAGGCCAT
AGCTCCTCGCGGCCCGGATCAGCAAGGGAACATGGTCTTAGCGCTGGGCA
ATGAGTGGTCGCTCGTTCTCCTGGCATCCGTGCTTCACATGCGCGGACCT
TGTATCTGCTCGCAGCCCGCCCAGGACGCATCAGGGAACGTTTTGCTCTG
GAATGGGGAGGTTTTTGCCGAGAGTCAAGGAAGGGAAGAAGATAAAGACA
GATCAGGAATTGATGAAGACTTTGGGGGTGAATCAACACTACAATTAATG
AGTAACGACACCGAGAAGCTGCTGCAAGAGCTTGGAGGCCCTTGGGATGG
GAGGGTCAGCGATTTGGATGAAGGCAGGTCCGACGCCCTCCTTCCGATTT
CTCGGCATGTGCGGCGGACGTTGGCTAAAATCAAAGGCCCTTGGGCTATG
ATTTTCTATCATAGCGCATCTAACACCTTACACTTCGGCCGAGATCGGCT
GGGAAGGCGCAGTTTGGTCATGAGCAAGGCCTGTGGCCGGGATGACGAAG
ACATGGATTGGATGGCCGTTGCCTCCACCAGCACTCCCTTTTCCCGAATA
AATAAGGGCGTAAGGGAAAGGGGGGCGAGGGAAGGCGAGCACAAGATATG
GGAGGAAGTCCCTGTCGATGGATTACGGGTGTTGGACCTCTCTTTCGCGT
CGAATGGTTCTTCTTTGCTGCGCCGCCCACATCTTGTGCCGTGGGGGCAC
CCAACCCCCCTCCTTTCGGGCCCTCGGCTCCTACCCATGACTCACTCGCA
GGCCATTGACAGCCTATATCATCTTCTGGGCGAGGCAGTACGGCGGCGCG
TGGTCTGTGTACAGTCCCCTCCTTGCGCACGGTGTCCCTCTCCTTGCACT
GCGGCCTGGCCCGTCGCCGGCCTGACGGAGGAGCAGGAACAAGCCTCCGC
GGGCCCTCCCGCACACGTGGGCGTACTCTACAGCGGCGGCGTGGACTGCC
AAGTTCTGGCCGCTCTGACCCACCTCCAGCTCGGCTCCGAGCCCGAGGCG
AGCAGCCCCGTCGACCTCCTGAACGTGTGCTTCGATAGCCCCGGGGGACA
CCGCTCCCCCGACCGCCTCGCTGCATTGGCAGGGTGGCTGGAGCTCCGCC
GCACATTTCCGACGCGACGGTGGCGCCTGATTTTGGTGGACGTGGACGAC
TACGGGGAAGAGGTGGGGAGCGTGGAGGAGGAGTTGAGGAGGCTGATCCT
CCCTTGCTCCACCCCTATGGACTTCAACATAGCCTGCGCCTTCTATCATG
CCGCGCGAGGCGTGGGGAGGGTGGCATGCGTGGAGGAGGCGGCGCGGGTA
CTGAAAGAGGCGGCGGCGGCGGGCTTGGGGGGGAAGTTGTTGCGCTACGG
GAAGGCGACCCCCGAGGAGGGACCCCGGGAGGCGGGGGGGGGAGGGAGGG
AGACAGGGCCCTCTACAGGGAAAATGAAGGAGTTGCCGGGGCCCTGCACC
GCGCCTGGCTGCCGGCGTGTGTTCAAACCCGGGTGCATGGACCGGCTCTG
CCACTATTGTTGTCGCAAGAGGCGGAGGGAGGCATTTGGGGCGGCCGAAG
GAGCTGCAAAGCCTGAGGTCCTCCGGGTAGGGAAGGAGGCTGAAGGCAAC
CATCGATTGGGGAGAGGAAACAGAGCTCAGCGGCAGCCTTTAGAGCAGGG
TCAACGGTGTCGTGTGCACGAGCCAGGCAAGCGCTCTCCGTTGCCGTCGG
GCGAGACGCTGGGACGCGCCGCCTCTCCCTCGTATCTTCCGCAAGAGCCT
CCTCTCGTCTCTCCTTCGCCGCTGAGTACACCGTTGTATCGCAGTCGAGC
CCGCGCATTGCTGGTAGGTGTAGGAGCGGACGAGCAGCTGGCGGGGTACG
GCAGACATCGTGCGACCTTTCAGAAAGGCGGAGAGGCCGCTTTGGCGGCG
GAGCTCGCCATGGATCTTGGCCGGCTCTGGACCAGAAACCTGGGCCGCGA
CGACCGGGTGATTGCTTCGCATGGGCGCGAGGCGCGATTTCCGTACCTGG
ACGAGGACGTGATGGCTTTCCTGTCTTCCCTCCCACCCACCCTGAAGTAC
ACCCTGACCGCATCCATGGGCGTGGGAGATAAAATGATCCTCCGGGAGCT
GGCACGTCAACGACTTGGTCTTGGGGGGGCGGCGGCCCTCGTAAAGCGGG
CAATCCAATTCGGCTCTCGCATTTCTCGAGAGGCAAGTATGCACAATTTC
GGCTCGCACCGAGCCGGGAGGCAGAAGCTCAGGGAGGAGAGAGCGGGCGG
CAAGGGGGGCGAGGGTCGGACTCCGGAGCCGGCCTGTGGAATGGTAGATG
CGGGCAGGCACGAGGCCAACAAGTTACAGTAGGGTTTTATTAAGGCGTGG
AGTTGGATTTAAAGGGGAATGTAGATGTCTGGTTCGAAGTCTGTACAGGG
GGCGATATGGAGTGAGCAGATGTGTCCGAAAGGAATGTTACGCCTGCAAG
GATTTGTAAAGTAACGTTCATAATTTCAGAGCCGTGCACC back to topprotein sequence of rna4553 >rna4553-protein ID=rna4553-protein|Name=rna4553|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDL
MRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNP
CFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRF
VPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK back to topmRNA from alignment at CM002463.1:901233..903535+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4553 ID=rna4553|Name=rna4553|organism=Nannochloropsis gaditana|type=mRNA|length=2303bp|location=Sequence derived from alignment at CM002463.1:901233..903535+ (Nannochloropsis gaditana)
AGTaacccctcgccccctcgaCGAGGGTACACACATCTCCGTGCGTGCTG
ATGCCTGTTTTGCAAGATGACCGACACGTTGTCTTCAGTCAAATAGATCT
GGCATCACATATTATTGTGTGGCCCGTGGGGCATTAACATCCGTGTGAAC
CCTTCCTGTCTGACAGACGCGACTGGGCTATAATTCGAACCAGAATACAC
TATGCTTTGAAAATTAGGTATGATTGAAGACTGGTATTTGATTTCAGGCA
GTTTTTGCGGCATTAATGGCCGAGGTCAGATTTGTGTCCAGCCCTACTGA
GACTATGTGTAGCCATTCATGAGATAGATCTCTTCTCTCTGTCCCGTTAC
TATGCGGTGCCTGTTCAAGAACAACCCTATCACATTGGACAATTAGTTAA
GCTTTCCACTGTCCTGCAGTGCGTCGTTGTCCCGGCGGGTGTGGAGAGAC
ATGCTGCAAGTGGCTCACGGGTTTCGACACGCGAGTCAATTAACGTTTCC
TCCTGTTCCCGTACTTGATACAGGTCACCTTTCTACCTAACACCATGTTT
GGACGCCTCTGGTCGCAATACAATGTCGCGCTTGAGAAGAACCCCTTGTT
AATCAAGGCCCTGACTTCCCTGACCGGCTTTACCATCGGGGACGTGCTGG
CGCAGAAGTTCGTCAcgccggacgaggagaaaggctaCGACCTGATGCGT
ACCGTGCGCTTGGGCTCCTtcggcttcctcgtccacggccctACTGGGCA
CTTTTTCTACGGATGGCTCGACAAGCAAATTCCGGGCACGGCCATGAAGA
CTGTGGCGACCAAGGTGGCTATTGATCAGCTCCTGTGGAACCCCTGCTTC
GGGGTCATGTTCTTCAGCTACCTGGGATTGGCCGAGGGCAAGTCCTTCAC
GGACATTCAGGCGAAGATCAAAAATGATCTTGCGACTGCGGTGGTGGGTT
CTTGGACGGTCTGGATCCCCGCGCACTTCATCAACTTCCGCTTCGTCCCT
TCCAATCAGCGACTGGTACGTGGTTCGGGCGGCCCGACCGGGAATGATCT
CTGAAAGGCTGGGGAAAAGGTGGCATACGACCCTCAATGATGCATGACCC
GCGTGAGGACCTTGTCTCACTATTTACATTCTATATCCCCCCCCGCAGCT
CTACATCAACTCCATCCAGATCGGGTACAATatcttcctgtccttcttgG
GGAACAAGAAGGTGGACGACACCGAGGAGctcaaggcggcggccaagtAG
AAGATGGAGCGGATGGTGGGGGCGTGGGCAAATGGGGGAAAGATAGTAGC
ACCCTGCAACGCCGACCGCAAGAGtgacgggggggaaatgcCATGGATGG
CAGTCGGGGTGctccgagggcggaggcatGCGTGCGTTGTGTGGGATGGA
TGCTGAGCAGGACGCGGGGGAATATATGTGTCAGCCTTAATTTTATGTAG
GGGCAGAGAACCAGGGTGGCTGAGAGGGAGTGCATTCGCAGGATAAgagc
cttccctcttcccgcaccATGGCGCACAAGCATACGCAATGCGTGACATG
GCTCTATTAACACATGTACATGCGAGCCCTCAAAGAAAAAACGATTAGAA
GAGAACCTGGAGAGAGGATAACCGAGCCACGGACCACCCGCGGACCGCGC
CTTGCCTTACGACCCCCTTGCGATCCGACGCCCGCATGCCTGAGATATGC
ATGAGTGAGCGTGACAAAGCAGAAGGATACCTCCTTCGGGAGGCGTGTTG
TTTATGCTTCATTTCGATCCCATCCAGTCATACATTATCTGCGTGCACTT
GACACAGGAAAGGTAGTACAACACGACATTCCCCGTCGACCATGGCAACC
CGAGGCAAAGCGAAtaagcagggagagggcggtggagcaggagagcgGTC
GGCCTTGAACCCGCTCGAGAAGAGGCCAGAGGACCGAACGCCGTACGAGA
AGATCGAGATGGCTACGAAGCGCATTATGCCCGAGGGCCAGCACCAGCAA
GACAAGCAGAAGCCCTGGCACACCCCCACGAAGAATGGATCCGCGAAGGA
ATAAGCGCGAGGACTCAAGCAATCGCTCGGAGAGCCTGTGAGGTATTTCG
CATAGTCAGTACAGAGCCAAGAAGAATGGTGGACCCGAAAAAGACGAAGA
AAGGTTTTAGGACGAGATGCagacaagaaagagggagactTGGAGGTGGG
CGAAAATATTCACAACGTGTGCGTTGATCATGTTTATAAATGAAATCAGA
TCCCGAATGCAGCCAAAATTTGATACAATTTGGAACGAAATTGACCACAG
CCT back to topCoding sequence (CDS) from alignment at CM002463.1:901233..903535+ >rna4553 ID=rna4553|Name=rna4553|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002463.1:901233..903535+ (Nannochloropsis gaditana)
ATGTTTGGACGCCTCTGGTCGCAATACAATGTCGCGCTTGAGAAGAACCC
CTTGTTAATCAAGGCCCTGACTTCCCTGACCGGCTTTACCATCGGGGACG
TGCTGGCGCAGAAGTTCGTCAcgccggacgaggagaaaggctaCGACCTG
ATGCGTACCGTGCGCTTGGGCTCCTtcggcttcctcgtccacggccctAC
TGGGCACTTTTTCTACGGATGGCTCGACAAGCAAATTCCGGGCACGGCCA
TGAAGACTGTGGCGACCAAGGTGGCTATTGATCAGCTCCTGTGGAACCCC
TGCTTCGGGGTCATGTTCTTCAGCTACCTGGGATTGGCCGAGGGCAAGTC
CTTCACGGACATTCAGGCGAAGATCAAAAATGATCTTGCGACTGCGGTGG
TGGGTTCTTGGACGGTCTGGATCCCCGCGCACTTCATCAACTTCCGCTTC
GTCCCTTCCAATCAGCGACTGCTCTACATCAACTCCATCCAGATCGGGTA
CAATatcttcctgtccttcttgGGGAACAAGAAGGTGGACGACACCGAGG
AGctcaaggcggcggccaagtAGATGTTTGGACGCCTCTGGTCGCAATAC
AATGTCGCGCTTGAGAAGAACCCCTTGTTAATCAAGGCCCTGACTTCCCT
GACCGGCTTTACCATCGGGGACGTGCTGGCGCAGAAGTTCGTCAcgccgg
acgaggagaaaggctaCGACCTGATGCGTACCGTGCGCTTGGGCTCCTtc
ggcttcctcgtccacggccctACTGGGCACTTTTTCTACGGATGGCTCGA
CAAGCAAATTCCGGGCACGGCCATGAAGACTGTGGCGACCAAGGTGGCTA
TTGATCAGCTCCTGTGGAACCCCTGCTTCGGGGTCATGTTCTTCAGCTAC
CTGGGATTGGCCGAGGGCAAGTCCTTCACGGACATTCAGGCGAAGATCAA
AAATGATCTTGCGACTGCGGTGGTGGGTTCTTGGACGGTCTGGATCCCCG
CGCACTTCATCAACTTCCGCTTCGTCCCTTCCAATCAGCGACTGCTCTAC
ATCAACTCCATCCAGATCGGGTACAATatcttcctgtccttcttgGGGAA
CAAGAAGGTGGACGACACCGAGGAGctcaaggcggcggccaagtAG back to top
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