rna4547, rna4547 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4547
Unique Name	rna4547
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2318
Alignment location	CM002463.1:887311..888897 -

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Properties


Property Name	Value
Product	methyltransferase type 11
Orig transcript id	gnl\|cribi\|Naga_100014g25.9296.mrna
Orig protein id	gnl\|cribi\|Naga_100014g25.9296
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:887311..888897 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g25	gene4388	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4547	rna4547-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26119.1	cds4535	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:887311..888897-
coding sequence from alignment at CM002463.1:887311..888897-

mRNA sequence

>rna4547 ID=rna4547|Name=rna4547|organism=Nannochloropsis gaditana|type=mRNA|length=2318bp
CGACTCGAGTAATTGCGGTCGACAATTCTTTACCTGCCGTTCACGGATGC
CAACCCATGATACCTCCGGCCTTGCTCTCTTCTAATAGACCACGATGACG
ACGTCTAATATGCTTGATTATGAGTATCAATAACACAAAACATAGCTTGA
AATTTCCTTTCCTGTTAACCACACGCTGCTAGTTGACGTTGCTGCTCTCC
CAAATATCGACGATACGGAAAATGTTGCCCCCTTTACCTCATGCTACACT
CTCCACAGTGACAGATGAGATCTAACTCAGCTCTTCTTGCTATACTTGGA
GCATTTGCCTGGGACATCTGTTGCACTCAGGCATGGATTCTCCCTCAGCA
TCGCCTCGCCACCTCCTCCCAACTTGTCTTGCAGCGGACCTCCCGCCAAT
TGATGATGGCGGCAGGTGCTGAGGGAGGTGAAAATGTTCTGAATAAGTTC
AGTCGGACCATCACACAGCCCAAAAGCCAGGGTGCTTCGCAGGCCATGCT
TTACGCCACGGGACTTGAGCCGGAGGATATGGCCAAGCCTCAGGTTGGCA
TTTCAAGCGTCTGGTTCGAGGGAAACCCTTGCAACATGCATTTGTTGGGT
CTGGCAGAGCACGTGAAAAAAGGAGTGGTTGCGTCGGGAATGGTGGGGTA
TAGATTCAACACCATCGGTGTCAGTGATGGCATCAGCATGGGTACGTCCG
GTATGTCTTTTTCGTTGCAGTCGAGGGATATTATCGCGGACTCCATTGAA
ACAGTAATGAGTGGGCAGTGGTACGACGCAAATATCGCGCTCCCAGGCTG
TGACAAGAACATGCCAGGTTGTCTGATTGCCATGGGCCGTCTAAACCGCC
CCTCTATCATGGTCTACGGGGGAACCATCCGAGCCGGTTGCTCCCCCGGG
CACGAGAAGCTGGACATTGTCTCGGCCTTTCAAGCGTATGGAGAGTATCA
GTACGAGCGCATTGACGAAACTGAGCGGGCAGAGATCATCCGGAATGCGT
GCCCCGGTCCCGGGGCGTGTGGCGGCATGTATACCGCCAACACCATGGCG
ACGGCGGCGGAGGCGTTGGGTATGACGCTGCCATATTCTTCCTCCACGCC
CGCGGACGATCCGCTCAAGCGGGAAGAATGCGAGCGTGCCGGTGCCGCCG
TCCGCAATTTGCTGGAAAAGGATATCAAGCCGAGGGATATCATGACACGG
GCGGCCTTCGAGAACGCGATGGTGACGGTGATGGCGTTGGGGGGGTCGAC
CAATGCGGTCCTGCACCTGATTGCCATGGCGCGCGCGGTGGGCATTCCCT
TGTCTCTGGACGACTTCCAAGCCTGCTCCGACCGCGTCCCGTTCATCGCA
GACCTGAAACCGAGCGGGAAGTACGTGATGGAGGACGTGCAGAAGATCGG
GGGGACGCCGGCGGTGATGAAATACCTGCTGGAGAAGGGTTTCTTGGACG
GCTCCTGCATGACCGTGACGGGGAAAACCATGGCCGAGAACCTGAAAGAC
TTGCCTAGCCTGAGCGCTGGCCAGGACGTGATCCTCCCGGTGGAGACTCC
CATCAAGTCCACGGGTCACCTGCAGATCCTGTACGGCAACCTGGCACCTG
GGGGGAGCGTGGCCAAGATCACTGGCAAGGAAGGAGAGCGTTTCTCGGGC
GTCGCCGCCGTGTTCGACTCGGAAGAAGACATGTTGGCGGCCTTGGAGCG
CAAGGAGATCAAAGCGGGGATGGTGATCGTCATCCGTTACGAAGGCCCCA
AGGGCGGTCCAGGGATGCCAGAGATGCTGACCCCCACAAGCGCGATCATG
GGAGCGGGGCTCGGGAAGGACGTGGCATTGATTACAGACGGTCGTTTTTC
GGGCGGCTCGCACGGCTTTGTGATCGGGCATGTCAGTCCCGAGGCGCAGG
AAGGTGGGCCCATCGCCTTGATCCAAGACGGGGATCCCATCGTGATCGAC
GCGCATGCCGACCAACGCCGGATGGATCTCTTGATCTCAGACGAAGAGAT
GGCGAAGCGAAAGGCGGCATGGAAACCGCGCCCGTACCCGGCCTCTCGTG
GCACGTTATACAAGTACATCAAGAATGTGGCCTCGGCCTCGGAGGGGTGT
GTGACAGATGAGTAAGGCGCCCGCCGAATGAATGACTGGGAGCAGATTGC
ATTGGATCAAATTCAAAGGAGAAGAAAATAAGGCCGCAGAAGATCCGATG
GTCCGTTCTTTTCGTTGAGACATGGCGGTAGAGTTTATCAAAGAACTAAA
ACACTTTTTGAGACCATAACGGCCGAAGGTATTGGTGGCATCGACAATGC
CTCTTCATCCGGGACGTG

protein sequence of rna4547

>rna4547-protein ID=rna4547-protein|Name=rna4547|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MLFLKIRRRRLELNLTSSVGFIIPRVCIREIHDVAAAGFRKQAEGYERTR
PSYPAAAVNYVAKLIGLSKRDLGKSTNVLDLAAGGGKFTCLISKRRGFHV
VAVEPVLAMREVFQQKLPEIPCLPGTADKIPCRNQSFDAVTIAQAFHWMS
TLDALRDIHRVLRPGGLLALLWNMESRSVPWVASLRDIYEKYDTNIPQYR
HGDWKEVFLLPEAQRLFPGPLTTRFFQQDMLVTKERAWERVLSKSYIASL
TEMEQAVVRSQVEGILHENRSAFSIPTRNPVTSEKEFAAHQLIDTEVTYI
REAALNSLRRLPNELVRKEKQPSTVCDACPTNSCGRRSSPQQSATLARRT
RAEGEAALNSLRRLPEEEPTELGDRYNSASADARQRPEVQLQDEELFVNL
HRLVNAVAPPVNVLIETLSMQEGQT

mRNA from alignment at CM002463.1:887311..888897-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4547 ID=rna4547|Name=rna4547|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002463.1:887311..888897- (Nannochloropsis gaditana)
ATGCTTTTTTTAAAAATAAGAAGAAGGCGGCTGGAATTAAATTTGACCTC
AAGTGTTGGGTTCATAATTCCAAGAGTCTGTATTCGCGAGATACACGATG
TTGCGGCTGCAGGCTTCCGAAAGCAGGCGGAGGGATACGAGAGGACCCGG
CCATCTTATCCTGCAGCGGCCGTGAACTACGTAGCAAAACTTATCGGATT
AAGCAAGAGAGATCTGGGGAAAAGTACAAATGTACTGGACTTAGCAGCGG
GCGGTGGCAAGTTTACCTGTTTAATAAGCAAGCGCAGAGGATTTCACGTT
GTCGCTGTGGAACCGGTGTTGGCGATGCGAGAGGTCTTTCAGCAAAAGCT
TCCCGAGATCCCATGCCTGCCAGGTACGGCAGACAAGATCCCTTGCCGTA
ATCAGTCCTTCGACGCCGTGACAATCGCCCAAGCGTTCCATTGGATGAGC
ACATTAGACGCCCTTCGAGATATCCACCGCGTGCTTCGCCCTGGAGGCCT
CTTGGCCTTGCTCTGGAACATGGAGAGCCGATCCGTCCCCTGGGTGGCGT
CCTTGCGCGATATCTATGAGAAGTACGACACCAACATCCCCCAGTACCGT
CATGGGGACTGGAAGGAGGTCTTTCTCCTTCCAGAGGCGCAGCGGCTTTT
CCCAGGACCCCTGACAACTCGATTTTTCCAACAAGACATGCTCGTCACGA
AGGAGAGGGCTTGGGAGCGGGTATTGAGCAAGAGTTACATCGCGTCGCTG
ACAGAAATGGAGCAAGCAGTCGTTCGCTCGCAGGTGGAAGGGATTTTGCA
TGAGAACCGATCGGCTTTTAGTATTCCAACGAGAAATCCGGTCACAAGTG
AGAAGGAATTTGCCGCACACCAACTCATCGACACCGAGGTGACCTATATT
CGTGCAGCCTAGCACGACTTAACCGCTGAGACACAGTCAGGATGTGACCT
GGGAAGCAATGCTGCGGAGAGACGATGGGCCACCTTTAGCGTGAAGGGAA
ACCGCATCATTCACAAGCGTTACCCTGCGATCACAGTTCCAGGAGCCCTC
TAACTTCTGGGAGAGAGTAGTGCGTTTCTTGAACACGCAAAGGCAGAGAG
GTGGATTCTCACGGCTCTACGCGGAGAGGGATCCGGCGCGCTGAAGTCGA
TATCTGACATCGCACCGCATTTGGCTTCGGCATTGCGCTCCCGACGAACT
CGTGCGGCAGGAGAAGCAGCCCTCAACAGTCTGCGACGCTTGCCCAACGA
ACTCGTGCGGAAGGAGAAGCAGCCCTCAACAGTCTGTGACGCTTGCCCGA
CGAACTCGTGCGGAAGGAGAAGCAGCCCTCAACAGTCAGCGACGCTTGCC
CGACGAACTCGTGCGGAAGGAGAAGCAGCCCTTAACAGTCTGCGACGCTT
GCCGGAGGAGGAACCGACGGAGCTAGGAGACCGATACAACTCGGCTTCAG
CGGATGCCCGGCAAAGGCCGGAGGTCCAGCTACAGGATGAGGAGCTCTTT
GTCAACCTCCATAGGCTGGTCAATGCGGTGGCTCCTCCTGTCAACGTCCT
GATTGAGACGTTGAGCATGCAAGAAGGCCAAACCTGA

Coding sequence (CDS) from alignment at CM002463.1:887311..888897-

>rna4547 ID=rna4547|Name=rna4547|organism=Nannochloropsis gaditana|type=CDS|length=2556bp|location=Sequence derived from alignment at CM002463.1:887311..888897- (Nannochloropsis gaditana)
GAGAAGCAGCCCTCAACAGTCTGCGACGCTTGCCCAACGAACTCGTGCGG
AAGGAGAAGCAGCCCTCAACAGTCTGTGACGCTTGCCCGACGAACTCGTG
CGGAAGGAGAAGCAGCCCTCAACAGTCAGCGACGCTTGCCCGACGAACTC
GTGCGGAAGGAGAAGCAGCCCTTAACAGTCTGCGACGCTTGCCGGAGGAG
GAACCGACGGAGCTAGGAGACCGATACAACTCGGCTTCAGCGGATGCCCG
GCAAAGGCCGGAGGTCCAGCTACAGGATGAGGAGCTCTTTGTCAACCTCC
ATAGGCTGGTCAATGCGGTGGCTCCTCCTGTCAACGTCCTGATTGAGACG
TTGAGCATGCAAGAAGGCCAAACCTGAATGCTTTTTTTAAAAATAAGAAG
AAGGCGGCTGGAATTAAATTTGACCTCAAGTGTTGGGTTCATAATTCCAA
GAGTCTGTATTCGCGAGATACACGATGTTGCGGCTGCAGGCTTCCGAAAG
CAGGCGGAGGGATACGAGAGGACCCGGCCATCTTATCCTGCAGCGGCCGT
GAACTACGTAGCAAAACTTATCGGATTAAGCAAGAGAGATCTGGGGAAAA
GTACAAATGTACTGGACTTAGCAGCGGGCGGTGGCAAGTTTACCTGTTTA
ATAAGCAAGCGCAGAGGATTTCACGTTGTCGCTGTGGAACCGGTGTTGGC
GATGCGAGAGGTCTTTCAGCAAAAGCTTCCCGAGATCCCATGCCTGCCAG
GTACGGCAGACAAGATCCCTTGCCGTAATCAGTCCTTCGACGCCGTGACA
ATCGCCCAAGCGTTCCATTGGATGAGCACATTAGACGCCCTTCGAGATAT
CCACCGCGTGCTTCGCCCTGGAGGCCTCTTGGCCTTGCTCTGGAACATGG
AGAGCCGATCCGTCCCCTGGGTGGCGTCCTTGCGCGATATCTATGAGAAG
TACGACACCAACATCCCCCAGTACCGTCATGGGGACTGGAAGGAGGTCTT
TCTCCTTCCAGAGGCGCAGCGGCTTTTCCCAGGACCCCTGACAACTCGAT
TTTTCCAACAAGACATGCTCGTCACGAAGGAGAGGGCTTGGGAGCGGGTA
TTGAGCAAGAGTTACATCGCGTCGCTGACAGAAATGGAGCAAGCAGTCGT
TCGCTCGCAGGTGGAAGGGATTTTGCATGAGAACCGATCGGCTTTTAGTA
TTCCAACGAGAAATCCGGTCACAAGTGAGAAGGAATTTGCCGCACACCAA
CTCATCGACACCGAGGTGACCTATATTCGAGAAGCAGCCCTCAACAGTCT
GCGACGCTTGCCCAACGAACTCGTGCGGAAGGAGAAGCAGCCCTCAACAG
TCTGTGACGCTTGCCCGACGAACTCGTGCGGAAGGAGAAGCAGCCCTCAA
CAGTCAGCGACGCTTGCCCGACGAACTCGTGCGGAAGGAGAAGCAGCCCT
TAACAGTCTGCGACGCTTGCCGGAGGAGGAACCGACGGAGCTAGGAGACC
GATACAACTCGGCTTCAGCGGATGCCCGGCAAAGGCCGGAGGTCCAGCTA
CAGGATGAGGAGCTCTTTGTCAACCTCCATAGGCTGGTCAATGCGGTGGC
TCCTCCTGTCAACGTCCTGATTGAGACGTTGAGCATGCAAGAAGGCCAAA
CCTGAATGCTTTTTTTAAAAATAAGAAGAAGGCGGCTGGAATTAAATTTG
ACCTCAAGTGTTGGGTTCATAATTCCAAGAGTCTGTATTCGCGAGATACA
CGATGTTGCGGCTGCAGGCTTCCGAAAGCAGGCGGAGGGATACGAGAGGA
CCCGGCCATCTTATCCTGCAGCGGCCGTGAACTACGTAGCAAAACTTATC
GGATTAAGCAAGAGAGATCTGGGGAAAAGTACAAATGTACTGGACTTAGC
AGCGGGCGGTGGCAAGTTTACCTGTTTAATAAGCAAGCGCAGAGGATTTC
ACGTTGTCGCTGTGGAACCGGTGTTGGCGATGCGAGAGGTCTTTCAGCAA
AAGCTTCCCGAGATCCCATGCCTGCCAGGTACGGCAGACAAGATCCCTTG
CCGTAATCAGTCCTTCGACGCCGTGACAATCGCCCAAGCGTTCCATTGGA
TGAGCACATTAGACGCCCTTCGAGATATCCACCGCGTGCTTCGCCCTGGA
GGCCTCTTGGCCTTGCTCTGGAACATGGAGAGCCGATCCGTCCCCTGGGT
GGCGTCCTTGCGCGATATCTATGAGAAGTACGACACCAACATCCCCCAGT
ACCGTCATGGGGACTGGAAGGAGGTCTTTCTCCTTCCAGAGGCGCAGCGG
CTTTTCCCAGGACCCCTGACAACTCGATTTTTCCAACAAGACATGCTCGT
CACGAAGGAGAGGGCTTGGGAGCGGGTATTGAGCAAGAGTTACATCGCGT
CGCTGACAGAAATGGAGCAAGCAGTCGTTCGCTCGCAGGTGGAAGGGATT
TTGCATGAGAACCGATCGGCTTTTAGTATTCCAACGAGAAATCCGGTCAC
AAGTGAGAAGGAATTTGCCGCACACCAACTCATCGACACCGAGGTGACCT
ATATTC

Synonyms

Publications