rna4544, rna4544 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4544
Unique Name	rna4544
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1080
Alignment location	CM002463.1:878666..881968 -

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100014g21.9259.mrna
Orig protein id	gnl\|cribi\|Naga_100014g21.9259
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:878666..881968 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g21	gene4385	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26082.1	cds4532	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4544	rna4544-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:878666..881968-
coding sequence from alignment at CM002463.1:878666..881968-

mRNA sequence

>rna4544 ID=rna4544|Name=rna4544|organism=Nannochloropsis gaditana|type=mRNA|length=1080bp
ATGCCCCCCCCTCCTTCCTCCGCCGCCCGCCTCCGTCTTCTGCTCGCAGG
CCTCTCCGCACGCCAGGAGAGTCTGGCCTTGCCGGGCGCCTTCAACGGGC
TGGTAGCTCGGGCAGTGGCTAATGCGGGCTTCGAGGCAACCTACGTGTCC
GGGGCGGGCGTCGCGGCTGGCATGGGGCTTCCTGACGTAGGCCTGGCAGG
TCTGGAAGACATGACTCGCGTGATAAGGGACGTCTCAGCCTGTTCCGGTC
TTCCGCTCCTGGCGGACGCCGACACGGGAGGGGAGGGCGGGGAGGGAGGA
GTGCGGCGCGTGGTGATGGAGTACCGACGGGCAGGCGCGGCCGCTCTTCA
CGTGGAGGACCAGGTATTTCCGAAGCGTTGCGGGCACTTGGAAGGGAAAG
AGTTGGTTCCTGCTGACGAATTTGCCCTGAAGGTCCAGGCAGCGGCGCGA
GCCCGCGACGAGGGGCGAGTAGCAGGAGAGGAGGGTGGGGGGAACGGGGG
GTTGATGATCTGTGCTCGCACGGACGCCCGGTCGGTGGTGGGGGTGGAGG
AGGTCATCGAGCGGGCTAAGCGGTACGTGGACGCTGGCGCGGACATGATC
TTTCCCGAGGGTCTCTGCTCCGGAGATGAGTTCTTGCGCGTGAGCCAAGC
GTTGAAGGGGTACAACGGTGTGAACGGGGGCGAAGGCCCTTACCTACTGG
CGAATATGACGGAGTTCGGGAAGACACCTTTGCTTTCCGTGCGTCGCATG
GGGGCGCTTGGGTACCATGCGACCATTTTCCCCATGACCCTTTTTCGGTG
GGCAATGCGGGGCGTGGTGGAGGCCTTGGAGGAGCTTCGAGAAGGTGGGA
GAGTGAGCAAGACGGCACTGAGGGAGGGGAGGCTCTTGACAAGAGAGGAA
ACGTACGAGCTGCTCGGGTATACCCCGGGGCGCGTGTGGGAGTATCCGAA
TGCAAACGCGTACAGCAGACGGAAGGGGACCCGACGCAGCGACTTTGTGC
AGGAAGGGAAAGAAGTCATGGAAGAGGAAGATGAGAACGAAGCGTCAGGA
TATGGGGAAGAGAATCCGAAAAAGAAATAA

protein sequence of rna4544

>rna4544-protein ID=rna4544-protein|Name=rna4544|organism=Nannochloropsis gaditana|type=polypeptide|length=1100bp
MAGQPLRIFDKFYLITVQQGRQGAIPYEYPPVSAADSCARKLPHHNDLIN
ICFPDLEEIRKTRSLNFKCPKLPRQASTLGALGAQVSNIGERVGVVSVGP
AAPPTLAGGRSSAFSVSNASAASSAWAGASIVTESSSGDNFRAELYCFSI
GDPEDERTHGFVYRCLPSGFGMRYDVGKRYPECLCFLTRHANARPIVQHV
LQHVHALRLLFTPVDRIESVLRDLYHAALPSPGEVLSLKLCPIGAEQAAR
AHRHTGAAEGEMPSGDALAVVYLFQQFKPKAFLMLLSAMLCERRVCLVAS
ETDMLLACTQAALGLLYPFTWQHDFFPVLPPSLLSRAAAPRPIVFGLRRQ
HLPLLRRSLLHDDLIYADLDLGNLSGSGAAPAPDIYALPNTSQVVQAAQK
LGVEAAKAAERIDKAISKGVAFLQKYTGQPSGRESEEPRPDAANLLSWEL
SLQGQTRASNPIAWPSYGGGGEGVGGQGGGRVAAVKTAVDKSLVQEEQQL
RDALLGFFVNIVGDASTYLRLDRSGKLVLDRDFYIGSRGLMGDGPHLSNF
LLELVQSRAFDRLAETRKVQMAVEMGAPRAVQGRERIEGGVGPFYRCVET
VRARGETFSTSNIKKALKAQSQQQAALPANQQGLLAEAEQTSGRWTVFHD
LVLQLTSNSSHNILPGEAERMMQQVLEDAYSSTLLPSILRTVWARLGDCK
GSKWKHAHKSLMLLRELLLYGPEATFSVALSQVTIVRALLQYKGGGLGGS
AQTSVVRDVAHDLLFLLLDGRRFMLERAVHWTGEKKVEGPAVILNAPHAF
NSSFADLHHALAPPALASKEAYSYASFSSLSPIIPAKKSLAVPVDLLSSN
SALAGNEKDDLMPLTEAPAFRTGGPIEHTNNTEQSVGPRQGAIPKLLPLK
KAAANLPQDELPPPLEGHPRKPQWEVFSPNAASGALSSASTSSSSSLSSA
APADSQWEAFPQTLAADLAINVQQPGQQMPPPKPARPIQLPSDALPPIQP
MLIPSVTDRQPQLSSQGDSRSIGNPFLTNATGLPMSGCRADNTSGAGGRS
LSPTSGMRGMTIGAKSGGETAIGEGVRIQGSMEAFGSVCDPFAEIEKSSV

mRNA from alignment at CM002463.1:878666..881968-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4544 ID=rna4544|Name=rna4544|organism=Nannochloropsis gaditana|type=mRNA|length=3303bp|location=Sequence derived from alignment at CM002463.1:878666..881968- (Nannochloropsis gaditana)
ATGGCTGGGCAGCCTCTTCGTATTTTTGACAAGTTCTATCTGATAACTGT
CCAGCAAGGACGCCAAGGCGCCATACCTTATGAATACCCTCCTGTCTCTG
CAGCGGATTCATGCGCGAGAAAGTTGCCACATCACAACGATCTTATCAAT
ATTTGCTTTCCCGATTTGGAAGAAATCCGGAAAACGCGGTCTCTAAACTT
CAAGTGCCCGAAACTCCCACGTCAAGCCTCAACTTTGGGCGCCCTGGGCG
CTCAAGTCAGCAATATCGGGGAGAGGGTGGGAGTGGTCTCAGTAGGTCCT
GCGGCCCCACCCACGCTGGCAGGGGGGAGGAGTAGCGCTTTTAGCGTCAG
CAATGCGAGTGCGGCCTCTTCCGCTTGGGCTGGCGCGAGCATCGTGACAG
AAAGTAGCAGCGGAGACAATTTCCGCGCTGAACTTTACTGCTTCTCAATC
GGCGACCCGGAAGATGAGCGCACTCATGGATTCGTCTATCGCTGTCTCCC
CTCGGGGTTTGGCATGCGATACGATGTGGGCAAGCGCTACCCCGAGTGTC
TGTGCTTCTTGACGCGCCACGCGAATGCGCGTCCCATCGTCCAGCACGTG
TTGCAGCATGTGCACGCCCTGCGTCTCCTGTTCACGCCTGTCGATCGCAT
CGAATCAGTGCTGAGGGACCTATATCACGCGGCTCTGCCCTCCCCTGGAG
AGGTCCTGTCTCTTAAGCTGTGCCCTATCGGCGCCGAGCAAGCGGCGCGG
GCCCACCGGCACACGGGGGCGGCGGAAGGGGAGATGCCCTCCGGGGATGC
GCTGGCAGTCGTCTACCTCTTCCAACAGTTCAAACCCAAGGCCTTTCTCA
TGCTCCTTTCCGCCATGCTCTGCGAGCGTCGAGTGTGTTTGGTTGCCTCG
GAGACGGACATGCTTCTCGCCTGCACGCAAGCGGCCCTTGGCCTCCTCTA
CCCCTTCACCTGGCAACACGACTTCTTTCCCGTCCTCCCCCCATCCCTCC
TCTCTCGCGCTGCCGCTCCTCGACCCATCGTCTTCGGCCTCCGCCGCCAA
CATTTGCCGCTTCTTCGTCGCTCCCTTCTCCACGACGACCTGATCTACGC
GGACCTGGACCTCGGCAACCTCAGTGGATCTGGCGCCGCCCCGGCTCCTG
ACATCTACGCCCTGCCCAACACCAGCCAGGTCGTCCAGGCTGCTCAAAAG
CTGGGGGTGGAGGCGGCCAAGGCGGCCGAGAGGATCGACAAGGCGATTAG
CAAGGGCGTGGCCTTCCTGCAGAAGTACACGGGACAGCCGTCGGGGAGGG
AGTCGGAGGAGCCCCGACCGGACGCGGCCAACCTTTTGTCCTGGGAGCTC
TCTCTTCAGGGACAAACCCGAGCCTCCAATCCAATCGCCTGGCCCAGCTA
TGGGGGAGGAGGGGAGGGAGTCGGAGGCCAAGGGGGCGGGCGGGTGGCGG
CAGTGAAGACGGCCGTGGACAAGAGCCTGGTGCAAGAGGAGCAGCAGCTC
CGGGACGCGCTTTTGGGGTTTTTTGTGAACATTGTGGGCGACGCAAGCAC
GTACCTGCGGCTGGACCGGTCCGGGAAGCTGGTGCTGGACAGAGACTTCT
ACATAGGCAGCCGGGGCTTGATGGGGGACGGGCCGCACTTGAGCAATTTC
CTCCTCGAGCTGGTGCAGTCCCGGGCGTTCGACCGCCTGGCAGAAACGCG
CAAAGTGCAGATGGCGGTGGAGATGGGTGCCCCAAGGGCAGTACAAGGAA
GAGAAAGGATAGAGGGAGGAGTTGGACCCTTTTATCGATGTGTGGAGACA
GTCAGAGCGCGTGGAGAGACCTTTTCGACGAGCAACATCAAAAAAGCCCT
CAAAGCGCAGTCGCAGCAGCAAGCCGCGCTTCCTGCCAACCAGCAAGGGC
TGCTGGCGGAGGCGGAACAGACGTCCGGCCGTTGGACGGTGTTCCATGAC
TTAGTCTTGCAGCTGACTTCCAACTCGAGTCACAACATCTTGCCAGGGGA
GGCGGAGCGCATGATGCAGCAAGTGCTGGAGGACGCCTACTCCTCCACCC
TCCTTCCCTCCATCCTCCGCACCGTGTGGGCTCGCCTGGGCGATTGCAAA
GGCTCGAAGTGGAAGCATGCCCACAAATCACTCATGTTATTGCGCGAGCT
TCTGTTGTACGGACCTGAGGCGACGTTCTCTGTCGCTCTGTCTCAGGTGA
CCATCGTGCGGGCCCTTCTGCAGTACAAGGGAGGGGGTCTTGGGGGAAGT
GCGCAAACAAGCGTGGTCAGGGATGTGGCGCACGACCTCCTCTTTTTGCT
TCTTGATGGTCGCCGTTTTATGCTGGAGCGCGCAGTGCATTGGACCGGAG
AGAAAAAGGTGGAGGGGCCGGCTGTCATTTTGAACGCTCCGCATGCCTTC
AATTCTTCCTTCGCGGACCTGCACCACGCCCTAGCTCCGCCCGCACTCGC
TTCCAAAGAAGCTTACTCCTACGCGTCATTCTCTTCTCTGTCGCCAATAA
TTCCTGCCAAAAAGAGCTTGGCAGTGCCTGTTGATCTGCTGAGCAGCAAT
AGCGCCCTGGCAGGGAACGAGAAGGATGATCTGATGCCTTTGACCGAGGC
TCCGGCCTTTCGGACAGGAGGACCGATAGAGCACACGAACAACACCGAGC
AGTCGGTAGGCCCCCGACAGGGCGCAATCCCAAAGCTGTTGCCCCTTAAA
AAAGCGGCTGCAAATTTGCCGCAGGATGAGCTGCCGCCTCCCTTGGAAGG
CCATCCGCGAAAACCTCAGTGGGAGGTTTTCAGTCCCAATGCCGCCAGCG
GGGCCCTATCCTCTGCATCTACCTCATCCTCCAGCTCTTTGTCCTCTGCC
GCCCCCGCTGACTCCCAGTGGGAAGCGTTTCCTCAAACACTCGCAGCTGA
CCTTGCCATCAACGTACAGCAACCAGGGCAGCAAATGCCTCCTCCCAAAC
CTGCTCGCCCAATCCAATTACCCTCAGATGCCCTTCCTCCCATCCAGCCC
ATGCTTATTCCTTCTGTCACGGACCGGCAGCCGCAGCTTTCATCTCAAGG
AGATTCGCGTTCTATCGGAAACCCTTTTTTAACGAATGCCACGGGTCTCC
CGATGAGCGGATGCCGTGCTGATAACACCTCAGGGGCAGGGGGCAGGAGC
CTCTCGCCCACGAGCGGGATGAGAGGAATGACGATTGGAGCAAAGAGCGG
AGGGGAAACAGCCATCGGAGAAGGAGTGAGGATACAGGGTTCGATGGAGG
CTTTTGGTAGCGTGTGCGATCCCTTCGCTGAGATAGAGAAGAGCAGTGTG
TAG

Coding sequence (CDS) from alignment at CM002463.1:878666..881968-

>rna4544 ID=rna4544|Name=rna4544|organism=Nannochloropsis gaditana|type=CDS|length=3303bp|location=Sequence derived from alignment at CM002463.1:878666..881968- (Nannochloropsis gaditana)
ATGGCTGGGCAGCCTCTTCGTATTTTTGACAAGTTCTATCTGATAACTGT
CCAGCAAGGACGCCAAGGCGCCATACCTTATGAATACCCTCCTGTCTCTG
CAGCGGATTCATGCGCGAGAAAGTTGCCACATCACAACGATCTTATCAAT
ATTTGCTTTCCCGATTTGGAAGAAATCCGGAAAACGCGGTCTCTAAACTT
CAAGTGCCCGAAACTCCCACGTCAAGCCTCAACTTTGGGCGCCCTGGGCG
CTCAAGTCAGCAATATCGGGGAGAGGGTGGGAGTGGTCTCAGTAGGTCCT
GCGGCCCCACCCACGCTGGCAGGGGGGAGGAGTAGCGCTTTTAGCGTCAG
CAATGCGAGTGCGGCCTCTTCCGCTTGGGCTGGCGCGAGCATCGTGACAG
AAAGTAGCAGCGGAGACAATTTCCGCGCTGAACTTTACTGCTTCTCAATC
GGCGACCCGGAAGATGAGCGCACTCATGGATTCGTCTATCGCTGTCTCCC
CTCGGGGTTTGGCATGCGATACGATGTGGGCAAGCGCTACCCCGAGTGTC
TGTGCTTCTTGACGCGCCACGCGAATGCGCGTCCCATCGTCCAGCACGTG
TTGCAGCATGTGCACGCCCTGCGTCTCCTGTTCACGCCTGTCGATCGCAT
CGAATCAGTGCTGAGGGACCTATATCACGCGGCTCTGCCCTCCCCTGGAG
AGGTCCTGTCTCTTAAGCTGTGCCCTATCGGCGCCGAGCAAGCGGCGCGG
GCCCACCGGCACACGGGGGCGGCGGAAGGGGAGATGCCCTCCGGGGATGC
GCTGGCAGTCGTCTACCTCTTCCAACAGTTCAAACCCAAGGCCTTTCTCA
TGCTCCTTTCCGCCATGCTCTGCGAGCGTCGAGTGTGTTTGGTTGCCTCG
GAGACGGACATGCTTCTCGCCTGCACGCAAGCGGCCCTTGGCCTCCTCTA
CCCCTTCACCTGGCAACACGACTTCTTTCCCGTCCTCCCCCCATCCCTCC
TCTCTCGCGCTGCCGCTCCTCGACCCATCGTCTTCGGCCTCCGCCGCCAA
CATTTGCCGCTTCTTCGTCGCTCCCTTCTCCACGACGACCTGATCTACGC
GGACCTGGACCTCGGCAACCTCAGTGGATCTGGCGCCGCCCCGGCTCCTG
ACATCTACGCCCTGCCCAACACCAGCCAGGTCGTCCAGGCTGCTCAAAAG
CTGGGGGTGGAGGCGGCCAAGGCGGCCGAGAGGATCGACAAGGCGATTAG
CAAGGGCGTGGCCTTCCTGCAGAAGTACACGGGACAGCCGTCGGGGAGGG
AGTCGGAGGAGCCCCGACCGGACGCGGCCAACCTTTTGTCCTGGGAGCTC
TCTCTTCAGGGACAAACCCGAGCCTCCAATCCAATCGCCTGGCCCAGCTA
TGGGGGAGGAGGGGAGGGAGTCGGAGGCCAAGGGGGCGGGCGGGTGGCGG
CAGTGAAGACGGCCGTGGACAAGAGCCTGGTGCAAGAGGAGCAGCAGCTC
CGGGACGCGCTTTTGGGGTTTTTTGTGAACATTGTGGGCGACGCAAGCAC
GTACCTGCGGCTGGACCGGTCCGGGAAGCTGGTGCTGGACAGAGACTTCT
ACATAGGCAGCCGGGGCTTGATGGGGGACGGGCCGCACTTGAGCAATTTC
CTCCTCGAGCTGGTGCAGTCCCGGGCGTTCGACCGCCTGGCAGAAACGCG
CAAAGTGCAGATGGCGGTGGAGATGGGTGCCCCAAGGGCAGTACAAGGAA
GAGAAAGGATAGAGGGAGGAGTTGGACCCTTTTATCGATGTGTGGAGACA
GTCAGAGCGCGTGGAGAGACCTTTTCGACGAGCAACATCAAAAAAGCCCT
CAAAGCGCAGTCGCAGCAGCAAGCCGCGCTTCCTGCCAACCAGCAAGGGC
TGCTGGCGGAGGCGGAACAGACGTCCGGCCGTTGGACGGTGTTCCATGAC
TTAGTCTTGCAGCTGACTTCCAACTCGAGTCACAACATCTTGCCAGGGGA
GGCGGAGCGCATGATGCAGCAAGTGCTGGAGGACGCCTACTCCTCCACCC
TCCTTCCCTCCATCCTCCGCACCGTGTGGGCTCGCCTGGGCGATTGCAAA
GGCTCGAAGTGGAAGCATGCCCACAAATCACTCATGTTATTGCGCGAGCT
TCTGTTGTACGGACCTGAGGCGACGTTCTCTGTCGCTCTGTCTCAGGTGA
CCATCGTGCGGGCCCTTCTGCAGTACAAGGGAGGGGGTCTTGGGGGAAGT
GCGCAAACAAGCGTGGTCAGGGATGTGGCGCACGACCTCCTCTTTTTGCT
TCTTGATGGTCGCCGTTTTATGCTGGAGCGCGCAGTGCATTGGACCGGAG
AGAAAAAGGTGGAGGGGCCGGCTGTCATTTTGAACGCTCCGCATGCCTTC
AATTCTTCCTTCGCGGACCTGCACCACGCCCTAGCTCCGCCCGCACTCGC
TTCCAAAGAAGCTTACTCCTACGCGTCATTCTCTTCTCTGTCGCCAATAA
TTCCTGCCAAAAAGAGCTTGGCAGTGCCTGTTGATCTGCTGAGCAGCAAT
AGCGCCCTGGCAGGGAACGAGAAGGATGATCTGATGCCTTTGACCGAGGC
TCCGGCCTTTCGGACAGGAGGACCGATAGAGCACACGAACAACACCGAGC
AGTCGGTAGGCCCCCGACAGGGCGCAATCCCAAAGCTGTTGCCCCTTAAA
AAAGCGGCTGCAAATTTGCCGCAGGATGAGCTGCCGCCTCCCTTGGAAGG
CCATCCGCGAAAACCTCAGTGGGAGGTTTTCAGTCCCAATGCCGCCAGCG
GGGCCCTATCCTCTGCATCTACCTCATCCTCCAGCTCTTTGTCCTCTGCC
GCCCCCGCTGACTCCCAGTGGGAAGCGTTTCCTCAAACACTCGCAGCTGA
CCTTGCCATCAACGTACAGCAACCAGGGCAGCAAATGCCTCCTCCCAAAC
CTGCTCGCCCAATCCAATTACCCTCAGATGCCCTTCCTCCCATCCAGCCC
ATGCTTATTCCTTCTGTCACGGACCGGCAGCCGCAGCTTTCATCTCAAGG
AGATTCGCGTTCTATCGGAAACCCTTTTTTAACGAATGCCACGGGTCTCC
CGATGAGCGGATGCCGTGCTGATAACACCTCAGGGGCAGGGGGCAGGAGC
CTCTCGCCCACGAGCGGGATGAGAGGAATGACGATTGGAGCAAAGAGCGG
AGGGGAAACAGCCATCGGAGAAGGAGTGAGGATACAGGGTTCGATGGAGG
CTTTTGGTAGCGTGTGCGATCCCTTCGCTGAGATAGAGAAGAGCAGTGTG
TAG

Synonyms

Publications