rna4543, rna4543 (mRNA) Nannochloropsis gaditana

Overview
Namerna4543
Unique Namerna4543
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1059
Alignment locationCM002463.1:877132..878414 +

Link to JBrowse

Properties
Property NameValue
Productmethylisocitrate lyase
Orig transcript idgnl|cribi|Naga_100014g20.9261.mrna
Orig protein idgnl|cribi|Naga_100014g20.9261
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:877132..878414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g20gene4384Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4543rna4543-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26084.1cds4531Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4543 ID=rna4543|Name=rna4543|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
ATGCCGGCAGCCATCAACCCCCCCGTGGTTCTCGTCTTGGGCGCCTCGGG
CTTACTCGGTCGTGCTGTACAGCACACACTACTCGAATCACTACCTCACG
GCGTCGTGGTCGCTGGGACTGGACATTCGCGGGCACGCGGCCTGATACCC
TGCGACGTTACCGATGAGACGACTTTACGCGAATTTCTGGCGGCTCAAGC
GCCTCGGGTCGTCGTAAATTGTGTGGCAGAGCGACGGCCAGACGTGGTGG
AGAAGGAGGATGCCAAAGCTCACGTCTTAAACGTGCGCTTGGTGGAAATA
TTGGCCGAGGAAAGTGCGCGACTGGGTTTCTATTTGCTGCACATCTCGAC
GGATTACGTCTTCGACGGGACGAAACCACCTTACAAGCCAGGAGACGACC
CTCACCCACTCAATGCGTACGGCGAACAAAAACTTGCGTCAGAAAAGGTC
CTCAGAGGAAAGGATTCAGGAGAGCGGGCCTGCGCCATCCTCCGTGTCCC
AGTCCTCTACGGCCCAAGCGCCGATCTGGCTGAGTCTTCCGTCACGCTCC
TCGCACGCGACGTCCTCGTGCCCCCGCGGTCCTCGCAGAAGAAGGTGGAC
GATTGGGCTGCTCGGTACGCCACGCACACGGAGGACGTGGCCCGCGTGGT
GACGGCCATGGTGGATCGGGCCTTGACCGGGGCGGGGGAGTTGCGCGGCA
CCTTCCACTACAGCAGCAAGGAGCGGTCTCAGGACCTCTCCCGGGGAGCA
GGAGGCGAGGAGCGGTCTCAGGACCTCTCCCGGGGAGTAGGAGGCGAGCA
ATGCCCCGGACAAGGGGGGGGGCGGGCATACACGAAGTACAGCATCAGCG
TGCTGATAGGAGAGGTGTTGGGGAGAGCGACGAAGCACCTGGAGCCGGAG
GCAAGCCCGCCTGAGGGGGCTCCTCGACCCCAGGACTGTGAGCTGGATAT
ATCCGCTTTGCAGGAGGCGCTGGGCGAGAAGGTGACCAGGTCCCGGGCCC
TCCGCGACGGTTTGAGAGAGGTCTTGCAGGGTATTCTAGGCGAAACGAGT
GACTCATGA
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protein sequence of rna4543

>rna4543-protein ID=rna4543-protein|Name=rna4543|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MPPPPSSAARLRLLLAGLSARQESLALPGAFNGLVARAVANAGFEATYVS
GAGVAAGMGLPDVGLAGLEDMTRVIRDVSACSGLPLLADADTGGEGGEGG
VRRVVMEYRRAGAAALHVEDQVFPKRCGHLEGKELVPADEFALKVQAAAR
ARDEGRVAGEEGGGNGGLMICARTDARSVVGVEEVIERAKRYVDAGADMI
FPEGLCSGDEFLRVSQALKGYNGVNGGEGPYLLANMTEFGKTPLLSVRRM
GALGYHATIFPMTLFRWAMRGVVEALEELREGGRVSKTALREGRLLTREE
TYELLGYTPGRVWEYPNANAYSRRKGTRRSDFVQEGKEVMEEEDENEASG
YGEENPKKK
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mRNA from alignment at CM002463.1:877132..878414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4543 ID=rna4543|Name=rna4543|organism=Nannochloropsis gaditana|type=mRNA|length=1283bp|location=Sequence derived from alignment at CM002463.1:877132..878414+ (Nannochloropsis gaditana)
atgcccccccctccttcctccgccgcccgcctccgtcttctGCTCGCAGG
CCTCTCCGCACGCCAGGAGAGTCTGGCCTTGCCGGGCGCCTTCAACGGGC
TGGTAGCTCGGGCAGTGGCTAATGCGGGCTTCGAGGCAACCTACGTGTCC
GGGGCGGGCGTCGCGGCTGGCATGGGGCTTCCTGACGTAGGCCTGGCAGG
TGAGCTCAGGGGGAATCGCACCGGGGCCTTCCTAGGAGGGGTGCAGGGGT
GGGGATGCGCATTAAACATGGACCGGCTCCAGTGTCGAAGCGGCTGTCGG
TGACTGTCCATCCCCCGAGagctctctcctcttctgtTTGCCGTCACATG
TCAATCCTTTGCCTTTCGTCAATGGCTTTCTCCGGCTTTCTTGGCACGAC
AGGTCTGGAAGACATGACTCGCGTGATAAGGGACGTCTCAGCCTGTTCCG
GTCTTCCGCTCCTGGCGGACGCCGacacgggaggggagggcggggaggga
ggagtgcgGCGCGTGGTGATGGAGTACCGACGGGCAGGCGCGGCCGCTCT
TCACGTGGAGGACCAGGTATTTCCGAAGCGTTGCGGGCActtggaaggga
aagagttGGTTCCTGCTGACGAATTTGCCCTGAAGGTCCAGGCAGCGGCG
CGAGCCCGCGACGAGGGGCGAGtagcaggagaggagggtggggggaacgg
ggggtTGATGATCTGTGCTCGCACGGACGCCCGgtcggtggtgggggtgg
aggaggtcatCGAGCGGGCTAAGCGGTACGTGGACGCTGGCGCGGACATG
ATCTTTCCCGAGGGTCTCTGCTCCGGAGATGAGTTCTTGCGCGTGAGCCA
AGCGTTGAAGGGGTACAACGGTGTGAACGGGGGCGAAGGCCCTTACCTAC
TGGCGAATATGACGGAGTTCGGGAAGACACCTTTGCTTTCCGTGCGTCGC
ATGGGGGCGCTTGGGTACCATGCGACCATTTTCCCCATGACCCTTTTTCG
GTGGGCAATGcggggcgtggtggaggccttggaggagcttCGAGAAGGTG
GGAGAGTGAGCAAGACGgcactgagggaggggaggctctTGACAAGAGAG
GAAACGTACGAGCTGCTCGGGTATACCCCGGGGCGCGTGTGGGAGTATCC
GAATGCAAACGCGTACAGCAGACGGAAGGGGACCCGACGCAGCGACTTTg
tgcaggaagggaaagaagtcatggaagaggaagatgagaacGAAGCGTCA
GGATATGGGGAAGAGAATCCGAAAAAGAAATAA
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Coding sequence (CDS) from alignment at CM002463.1:877132..878414+

>rna4543 ID=rna4543|Name=rna4543|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at CM002463.1:877132..878414+ (Nannochloropsis gaditana)
atgcccccccctccttcctccgccgcccgcctccgtcttctGCTCGCAGG
CCTCTCCGCACGCCAGGAGAGTCTGGCCTTGCCGGGCGCCTTCAACGGGC
TGGTAGCTCGGGCAGTGGCTAATGCGGGCTTCGAGGCAACCTACGTGTCC
GGGGCGGGCGTCGCGGCTGGCATGGGGCTTCCTGACGTAGGCCTGGCAGG
TCTGGAAGACATGACTCGCGTGATAAGGGACGTCTCAGCCTGTTCCGGTC
TTCCGCTCCTGGCGGACGCCGacacgggaggggagggcggggagggagga
gtgcgGCGCGTGGTGATGGAGTACCGACGGGCAGGCGCGGCCGCTCTTCA
CGTGGAGGACCAGGTATTTCCGAAGCGTTGCGGGCActtggaagggaaag
agttGGTTCCTGCTGACGAATTTGCCCTGAAGGTCCAGGCAGCGGCGCGA
GCCCGCGACGAGGGGCGAGtagcaggagaggagggtggggggaacggggg
gtTGATGATCTGTGCTCGCACGGACGCCCGgtcggtggtgggggtggagg
aggtcatCGAGCGGGCTAAGCGGTACGTGGACGCTGGCGCGGACATGATC
TTTCCCGAGGGTCTCTGCTCCGGAGATGAGTTCTTGCGCGTGAGCCAAGC
GTTGAAGGGGTACAACGGTGTGAACGGGGGCGAAGGCCCTTACCTACTGG
CGAATATGACGGAGTTCGGGAAGACACCTTTGCTTTCCGTGCGTCGCATG
GGGGCGCTTGGGTACCATGCGACCATTTTCCCCATGACCCTTTTTCGGTG
GGCAATGcggggcgtggtggaggccttggaggagcttCGAGAAGGTGGGA
GAGTGAGCAAGACGgcactgagggaggggaggctctTGACAAGAGAGGAA
ACGTACGAGCTGCTCGGGTATACCCCGGGGCGCGTGTGGGAGTATCCGAA
TGCAAACGCGTACAGCAGACGGAAGGGGACCCGACGCAGCGACTTTgtgc
aggaagggaaagaagtcatggaagaggaagatgagaacGAAGCGTCAGGA
TATGGGGAAGAGAATCCGAAAAAGAAATAAatgcccccccctccttcctc
cgccgcccgcctccgtcttctGCTCGCAGGCCTCTCCGCACGCCAGGAGA
GTCTGGCCTTGCCGGGCGCCTTCAACGGGCTGGTAGCTCGGGCAGTGGCT
AATGCGGGCTTCGAGGCAACCTACGTGTCCGGGGCGGGCGTCGCGGCTGG
CATGGGGCTTCCTGACGTAGGCCTGGCAGGTCTGGAAGACATGACTCGCG
TGATAAGGGACGTCTCAGCCTGTTCCGGTCTTCCGCTCCTGGCGGACGCC
GacacgggaggggagggcggggagggaggagtgcgGCGCGTGGTGATGGA
GTACCGACGGGCAGGCGCGGCCGCTCTTCACGTGGAGGACCAGGTATTTC
CGAAGCGTTGCGGGCActtggaagggaaagagttGGTTCCTGCTGACGAA
TTTGCCCTGAAGGTCCAGGCAGCGGCGCGAGCCCGCGACGAGGGGCGAGt
agcaggagaggagggtggggggaacggggggtTGATGATCTGTGCTCGCA
CGGACGCCCGgtcggtggtgggggtggaggaggtcatCGAGCGGGCTAAG
CGGTACGTGGACGCTGGCGCGGACATGATCTTTCCCGAGGGTCTCTGCTC
CGGAGATGAGTTCTTGCGCGTGAGCCAAGCGTTGAAGGGGTACAACGGTG
TGAACGGGGGCGAAGGCCCTTACCTACTGGCGAATATGACGGAGTTCGGG
AAGACACCTTTGCTTTCCGTGCGTCGCATGGGGGCGCTTGGGTACCATGC
GACCATTTTCCCCATGACCCTTTTTCGGTGGGCAATGcggggcgtggtgg
aggccttggaggagcttCGAGAAGGTGGGAGAGTGAGCAAGACGgcactg
agggaggggaggctctTGACAAGAGAGGAAACGTACGAGCTGCTCGGGTA
TACCCCGGGGCGCGTGTGGGAGTATCCGAATGCAAACGCGTACAGCAGAC
GGAAGGGGACCCGACGCAGCGACTTTgtgcaggaagggaaagaagtcatg
gaagaggaagatgagaacGAAGCGTCAGGATATGGGGAAGAGAATCCGAA
AAAGAAATAA
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Synonyms
Publications