rna4536, rna4536 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4536
Unique Name	rna4536
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2152
Alignment location	CM002463.1:860982..863612 -

Link to JBrowse

Properties


Property Name	Value
Product	cystathionine beta-synthase
Orig transcript id	gnl\|cribi\|Naga_100014g14.9282.mrna
Orig protein id	gnl\|cribi\|Naga_100014g14.9282
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:860982..863612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g14	gene4378	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26105.1	cds4524	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4536	rna4536-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:860982..863612-
coding sequence from alignment at CM002463.1:860982..863612-

mRNA sequence

>rna4536 ID=rna4536|Name=rna4536|organism=Nannochloropsis gaditana|type=mRNA|length=2152bp
TGCACTTGGCAATGGGTGCATGTTGCTCTATACCGAGTCCATATTATATC
TCGAGCCCTCGTCTTATTCTTTCGAAGCTGACGCTGGACAACCCGTGGAC
GAACGAATTGCTTTTTTTCGACGGCTGACATCGTGAGCTTGGAGGCGATG
GAGGGGCAGTATCTTTCACTCTCTCCCACGACACCCATTCGGAAGCTCGC
AGGTCCAAACTGAAAGGCTGCGGGACTTTGAAGTACCGTGGACTGTATAA
TTAATATGTGCATGACTTGTAGATGAAAGTGACTGGGCAAATGTTTGAAC
ATCACGACGTGAATATGCGCACCCACATGACTCGCTCTCTGCCCCCTCCT
TCTCCCACGTAGGTGGCTTCGTACTTGCTGTCACCTTTTCGACAGAGGAT
ACAGCTATCAGCATCCATTCTGACCATGGGACGACGAACAGTGATACTGG
CCGCCGCGCTTCCTGCCCTTGGAGCGGCCTTCTTGTTGCCTGCAGGAATT
CGACAGTCATGGGTGGGAAAGAGCCAAGGACCACGGCAACAGGGGAAGCT
GTCCATGACGCGTCAGGGCGTACAGGACAAGATGGAGCGGGCTTTCATGA
AGAATGCTATCATGGATAAACGGTCGTTTGGGTACACACTGGTGGAGGCA
GAGTCAGAGTACGACGCAGATTTCCGGCCAGGGCAGGATGAGGACGACGA
CGTGGACGGGGAGGCGGAGGTTTTCTCTCCTTTAGAGCTGAAGGCCATGT
ACGGCGAGGAGTATACCGGGCCCTTCAAGGAGGTAGACATTGGCTCGGGT
ATTGGAGACTTCTCCTTGCCCTCATACAGCAAGGGCGAGCTCATCAAGGG
CATCGTCTTGGAGTACGACAACGGCGGCGCCCTCGTGGATGTTGGGTCCA
AGGCACCTGCCTTCTTGCCCGGGCGCGAGGTGAGCATCAATCCCGCGGAC
AAGATGCAGGATATTGTCCGCCTGGATGAGGAGCTAGAGTTTCAGGTCAT
CTCGGACGGGGACGAGGACGGGGCGATCATGCTCTCCCTCAAGCGCATCC
AGTACGAGAAGACATGGGAGTCGCTTCTAAAACTCCAGGCAGCCGACGCG
TCCTTCAAGGGCACCGTGACGGGCGTGAATAAGGGAGGCGCCATCGTTCT
GGTGGAGGGCCTCCGGGCGTTTTTGCCGGGCTCCCATCTCTCCGGCGTGT
ACGCCGACGAGTCATTGGTCGGCCAGGTCTTACCCCTCAAGTTCCTGGAG
CTGAACAAGGAGAACGGAAAGCTGGTGGTGTCGCATCGTCGGGCCTTGGT
GGACTCGCAGATGGACAGCATGTCTCGCGGCGACGTGGTGGTGGGCATGG
TGAAGCTTCTGAAGCCCTACGGTGCCTTTGTGGAGGTGAACGGGATGTCA
GGGCTGCTCCATATATCGCAAGTCTCGTACGACCGGGTGGAGGACCTCTC
CCTGGTGGTGCAGCCGGGGCAAAAGATCAAGTGCATGATCGTGGACCACG
ACAAGGTGAACGGGCGCATTGCCCTGAGCACCAAGACGCTGGAGCCTGAA
CCGGGAGACATGCTGCGAGACCGACAGAAGGTGTTTGACATGGCCGAGGT
GACCGCCAAGAAGTACCACGAGCGAATGGAGGCAGAGAGGAAAGCGCGGG
AGGAAGCGGCCAAAGACATTGTGCTGGGCCTTAGCGAGGGACTGACGGGT
TTGGACGGCGGCTACGAGAACTTGGACTCGGACCCGTTGGCGGGCTTGGA
CGCGTTCAAGATGGACCCCCTGGCGGGCATCCAGATGGAGCCGATCTACA
CGGACAAGGAGGGCGAGAAGTAGGAGGTGGGGCGCCTGAACACGACAACT
AAATATGATCAAGGGCGGCCTGAGGAAGAGAGGGGCCTAGCGGGCGAGGG
ATACCGGGGAGGGGTAGACAGTCAGAGGAACCCTGTGAGGTGTGGGCGAA
GAGGCTCACAGTGTGGGATGCGAAGCCATCAAGGGCTATGATAATTATCG
CAATAGTCACTGGAGCACCTGTGTATGTGCTCACCTGTCTATTTGGTCGG
ACGCGATGCGCGTGTGTGATAAAACGACCTGAAAAATGGTAGGAAAACCC
GGAAGAATACAGCAGAAAAACAGAGACCGAAAACAGCCGAGTATGAGCTT
CG

protein sequence of rna4536

>rna4536-protein ID=rna4536-protein|Name=rna4536|organism=Nannochloropsis gaditana|type=polypeptide|length=580bp
MPSTQSSKRKSSSSGGDSATSCPHLEKKRMSSPSSSVADAADGATYRQGR
SDGPVKCTWTPWTTEASPHIHEARRPKPKILNNILDHIGDTPLVRINNIT
ASEGIKCEILAKCEFFNSGGSVKDRIGKRMIEDAERSGLIKPGDTLIEPT
SGNTGIGLALAAAIKGYRMIITLPEKMSREKVDILKALGAEIVRTPTEAA
FDSPDSHIGVAKRLQTEIPNSHILDQYANPSNPLAHYDHTAEELLEQTDG
HIDFLVVSAGTGGTLTGTGRKLKERLPNLTIVGVDPVGSILAEPDALNER
DRLTSYKVEGIGYDFVPTVLDRALVDEWVKTDDKESLLMARRLIRDEGLL
CGGSCGSAMAAAVRIAKTLPVGKRVVVLLPDSSRNYMTKLISDKWMLEAG
FADGRLIDRPQYKTWWAKKRVQDLHLQTPITIAPGVSCKEAIGLLSAQGF
DTLPVISVDGKILGVVTEGNLTAKLVSNRVQPDDDITSALYPQFRKVNMG
DTLGDLANIFDRDHYALVVAEQLQYTGAKGGAVPGAKGLLPSATRSVVTG
VATRIDLLNYISSTPVEEVLPQGRGEGLKD

mRNA from alignment at CM002463.1:860982..863612-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4536 ID=rna4536|Name=rna4536|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp|location=Sequence derived from alignment at CM002463.1:860982..863612- (Nannochloropsis gaditana)
CCTGCAACAAGTCAAATACCACATACAACGCACAATATGCCCGCTCTCAC
GCACCACGAGCAGGAATGTTGTCATCATGGTCACAGCTATCGCTCACGCT
GTTCGCTTTGCTTCTGCTTGGGCATATATTTTGTAACAGACGACTTCTTT
CGCTTTTTTCTGTTGCTGCTGCCTTCCCGGATTGATTTCAGAAGTCCCAG
TAGACTTCCGCCATGCCCTCTACGCAAAGCAGCAAACGCAAGAGCAGCTC
TTCTGGCGGTGATTCGGCCACAAGCTGTCCACACTTAGAGAAAAAACGCA
TGTCGTCCCCGTCCTCGTCCGTCGCGGACGCTGCCGATGGGGCTACGTAT
CGTCAGGGTCGATCCGACGGGCCTGTGAAATGCACATGGACGCCTTGGAC
GACAGAAGCCTCCCCGCACATTCATGAGGCACGTCGACCTAAGCCTAAGA
TCTTGAACAACATTTTGGACCATATTGGAGACACGCCATTGGTGCGGATT
AACAATATCACTGCCTCGGAGGGCATCAAATGCGAGATTCTTGCCAAGTG
TGAGTTTTTTAATTCAGGGGGCTCTGTTAAAGACCGTATAGGCAAACGCA
TGATCGAGGACGCTGAGCGAAGCGGGCTTATCAAGCCAGGGGACACGTTG
ATCGAGCCCACGTCGGGAAACACAGGAATCGGGTTGGCCCTGGCGGCGGC
CATCAAGGGGTATCGAATGATCATTACCTTGCCCGAGAAAATGAGCCGTG
AAAAGGTCGACATCTTGAAGGCACTAGGGGCCGAAATCGTTCGCACACCC
ACAGAGGCTGCCTTCGACTCCCCCGACTCCCACATCGGCGTGGCCAAACG
CCTGCAGACCGAGATCCCGAATTCGCACATCCTCGATCAGTATGCCAATC
CGTCCAACCCCCTCGCCCACTACGACCACACCGCGGAAGAGCTCCTGGAG
CAAACCGACGGTCACATCGACTTCTTGGTGGTGTCGGCAGGCACAGGCGG
GACGCTGACGGGCACGGGTCGTAAGCTCAAGGAGCGGCTGCCCAACCTAA
CCATTGTGGGGGTGGACCCCGTAGGCTCGATTTTGGCGGAGCCCGACGCC
CTGAACGAGCGGGACCGTCTCACTTCGTACAAGGTGGAAGGCATCGGCTA
TGACTTCGTTCCTACGGTTCTGGACCGCGCGCTCGTGGACGAGTGGGTGA
AGACGGACGACAAGGAGTCTCTGCTCATGGCACGGCGTCTGATCCGAGAC
GAGGGCCTGCTCTGTGGGGGTTCCTGCGGTTCTGCCATGGCCGCCGCCGT
GCGTATCGCCAAGACCCTGCCGGTGGGCAAGCGCGTGGTAGTCCTGCTCC
CAGACTCGAGTCGAAACTACATGACCAAGCTCATTTCAGACAAGTGGATG
CTGGAGGCGGGCTTCGCGGACGGGCGGCTCATCGACCGCCCTCAGTACAA
AACGTGGTGGGCCAAGAAACGCGTGCAGGACCTGCACCTGCAGACCCCCA
TTACCATCGCGCCCGGCGTGTCGTGCAAGGAGGCGATCGGCTTGCTCTCG
GCCCAGGGTTTTGACACCCTGCCGGTCATCTCCGTAGACGGGAAGATCTT
GGGCGTGGTCACGGAGGGCAACTTGACAGCCAAGCTGGTGTCCAACCGGG
TGCAGCCTGACGACGACATCACGAGCGCGCTCTATCCCCAGTTCAGGAAG
GTGAACATGGGGGACACGCTCGGCGACCTCGCCAACATCTTCGACAGGGA
TCACTACGCCCTGGTGGTAGCAGAGCAGTTGCAGTACACGGGCGCCAAGG
GTGGCGCGGTCCCGGGGGCAAAGGGTCTACTGCCCTCCGCGACGCGGTCT
GTGGTGACGGGTGTAGCGACGCGGATTGATCTGCTGAATTACATTTCTTC
AACGCCAGTGGAGGAAGTGTTACCACAAGGCAGGGGGGAAGGACTGAAGG
ACTAGCTGGATGCAAGAATTCGGCGCCGAGAAGGAGAGCAAAGAACAAGG
GTTGATCACACATATTGCGGAGCGTCTCCCCTCCTCCCAGTTGTTTGTGC
ATACGGTTTCTATTACATAATTCTGGTGAATGTTTGAAGTTGTACAGGGG
TGTAGTCGGGTAGGGCATCTCAACGTGTGGCAGTATCGTCGATTTCAGTC
ACCGCAAAAAAAAATCTAGCGGAAGTAGTGCATGAAAAGCGTTGGTGGCA
TCTACGCGACAGCGGCAGTGGCCTTATATAAGCAGGCTATGGCGCCGACT
GAGGAAGATATGCAGTAGATTTCGGGAGAGAGCTCTGAAAAAAGTGTTTC
CTTTCTGTAAATTTGGCCGCGAATACGTGAGCAGTACGAGTAGGAATACA
AGGAGAATCGACTGTGCGTGCAGGGATCCGTTTCCATCGCAGTGCGGGCG
TGCACCGTGGCACAACAGAAAGTGTACAGTGGCGTTTCAAGCAAAGACAG
AGGAGGTTGGCCGACCTCCTTTCTTTGCCCTTTATCGGATCAGGACGCAT
CTTGAATACGTGAGAAAGAGAGCTCTGTGATTGAGGAAAACAAAAAACAA
AGGTCTCCGGTCAATGAGTTCGAAGCTCATACTCGGCTGTTTTCGGTCTC
TGTTTTTCTGCTGTATTCTTCCGGGTTTTCC

Coding sequence (CDS) from alignment at CM002463.1:860982..863612-

>rna4536 ID=rna4536|Name=rna4536|organism=Nannochloropsis gaditana|type=CDS|length=1743bp|location=Sequence derived from alignment at CM002463.1:860982..863612- (Nannochloropsis gaditana)
ATGCCCTCTACGCAAAGCAGCAAACGCAAGAGCAGCTCTTCTGGCGGTGA
TTCGGCCACAAGCTGTCCACACTTAGAGAAAAAACGCATGTCGTCCCCGT
CCTCGTCCGTCGCGGACGCTGCCGATGGGGCTACGTATCGTCAGGGTCGA
TCCGACGGGCCTGTGAAATGCACATGGACGCCTTGGACGACAGAAGCCTC
CCCGCACATTCATGAGGCACGTCGACCTAAGCCTAAGATCTTGAACAACA
TTTTGGACCATATTGGAGACACGCCATTGGTGCGGATTAACAATATCACT
GCCTCGGAGGGCATCAAATGCGAGATTCTTGCCAAGTGTGAGTTTTTTAA
TTCAGGGGGCTCTGTTAAAGACCGTATAGGCAAACGCATGATCGAGGACG
CTGAGCGAAGCGGGCTTATCAAGCCAGGGGACACGTTGATCGAGCCCACG
TCGGGAAACACAGGAATCGGGTTGGCCCTGGCGGCGGCCATCAAGGGGTA
TCGAATGATCATTACCTTGCCCGAGAAAATGAGCCGTGAAAAGGTCGACA
TCTTGAAGGCACTAGGGGCCGAAATCGTTCGCACACCCACAGAGGCTGCC
TTCGACTCCCCCGACTCCCACATCGGCGTGGCCAAACGCCTGCAGACCGA
GATCCCGAATTCGCACATCCTCGATCAGTATGCCAATCCGTCCAACCCCC
TCGCCCACTACGACCACACCGCGGAAGAGCTCCTGGAGCAAACCGACGGT
CACATCGACTTCTTGGTGGTGTCGGCAGGCACAGGCGGGACGCTGACGGG
CACGGGTCGTAAGCTCAAGGAGCGGCTGCCCAACCTAACCATTGTGGGGG
TGGACCCCGTAGGCTCGATTTTGGCGGAGCCCGACGCCCTGAACGAGCGG
GACCGTCTCACTTCGTACAAGGTGGAAGGCATCGGCTATGACTTCGTTCC
TACGGTTCTGGACCGCGCGCTCGTGGACGAGTGGGTGAAGACGGACGACA
AGGAGTCTCTGCTCATGGCACGGCGTCTGATCCGAGACGAGGGCCTGCTC
TGTGGGGGTTCCTGCGGTTCTGCCATGGCCGCCGCCGTGCGTATCGCCAA
GACCCTGCCGGTGGGCAAGCGCGTGGTAGTCCTGCTCCCAGACTCGAGTC
GAAACTACATGACCAAGCTCATTTCAGACAAGTGGATGCTGGAGGCGGGC
TTCGCGGACGGGCGGCTCATCGACCGCCCTCAGTACAAAACGTGGTGGGC
CAAGAAACGCGTGCAGGACCTGCACCTGCAGACCCCCATTACCATCGCGC
CCGGCGTGTCGTGCAAGGAGGCGATCGGCTTGCTCTCGGCCCAGGGTTTT
GACACCCTGCCGGTCATCTCCGTAGACGGGAAGATCTTGGGCGTGGTCAC
GGAGGGCAACTTGACAGCCAAGCTGGTGTCCAACCGGGTGCAGCCTGACG
ACGACATCACGAGCGCGCTCTATCCCCAGTTCAGGAAGGTGAACATGGGG
GACACGCTCGGCGACCTCGCCAACATCTTCGACAGGGATCACTACGCCCT
GGTGGTAGCAGAGCAGTTGCAGTACACGGGCGCCAAGGGTGGCGCGGTCC
CGGGGGCAAAGGGTCTACTGCCCTCCGCGACGCGGTCTGTGGTGACGGGT
GTAGCGACGCGGATTGATCTGCTGAATTACATTTCTTCAACGCCAGTGGA
GGAAGTGTTACCACAAGGCAGGGGGGAAGGACTGAAGGACTAG

Synonyms

Publications