rna4533, rna4533 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4533
Unique Name	rna4533
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2109
Alignment location	CM002463.1:854015..856634 -

Link to JBrowse

Properties


Property Name	Value
Product	wd repeat-containing protein 70
Orig transcript id	gnl\|cribi\|Naga_100014g10.9271.mrna
Orig protein id	gnl\|cribi\|Naga_100014g10.9271
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:854015..856634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g10	gene4375	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26094.1	cds4521	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4533	rna4533-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:854015..856634-
coding sequence from alignment at CM002463.1:854015..856634-

mRNA sequence

>rna4533 ID=rna4533|Name=rna4533|organism=Nannochloropsis gaditana|type=mRNA|length=2109bp
TAAAGCTCAGCCACTGCACTTTGATGATAACATGGTGCACAGGAGGCTTG
CACGTCGTTATGATCGGCTGATATCGCTACGTCATACCACAGAGTCAGCT
CTGGTCGTGGATGCGGTTTGCCCGAAATAGTAATTCAGCACTGCTTGACT
TGGTCCGCGCACAACTCTTCTTGCTCGTCGTTGCTGTGGGTCAGTGCTTC
CTGATACCAGCTTCTTGTCATCGCATCAAAAATTTCGCCCTGAGCATGTC
AAGTGCTACCTTTACGGTCTCTAACGGTCAAGACGCTGCCAATTGCGGCC
ACCTTTATGGCCATGGAAATCCCGAACACACACCCAGCATCCTTCAAACC
ATCACGGCGCAGCGGTATCTGGACGTTGGCTTAGCTCAGGCTCAAACATC
TGCTGCGGACCTCGAGGCTCGCATTGCTGAATTCGACAAAGCTCATGGTC
CACCACTTAACCTTCTTGAGCGCATTCGTGCTGAAGAGAAGCCTATTGCA
TTGGCGGCCGAATTCAAGCGGGCTAGTCCTAGCAAAGGCGACATAGCGCT
CGACCTTGTCGCTGCTGAGCAAGGAGTCAAGTACACCAAAGCGGGTGCAA
GCATTCTCTCAGTTCTCACAGAGCCCAAGTGGTTCAAAGGCTCATTGCAA
GACATGGAAGACGTGCGTTTGGCCACCGAGCAAGGCCTGCAATCCCTGCG
GCCTGCGGTTCTCCGCAAGGATTTTGTTGTGGCGGACTACCAGATCCTGG
AGGCCCGCGCGCACGGCGCCGATACTGTCTTGCTCATCGTTGCCATCCTG
GAGGTAGATAGGTTGGTACGCCTGATTCGAGCATGTCGGGCCTGGGGTAT
GGAGCCGCTCGTGGAAGTCAACAACCTCCGGGAGATGGAGATTGCCCTGG
ATGCGGGCGCCAAGGTAGTCGGAGTTAACAACAGGAACCTGCACACCTTC
CAGCTGGACTTGGGGACTACAGAGCGTGTCATGGAGGTAGCCCGGAAGAG
AGGGCTGAGCTGGGACCGTCGGAGGGGCGACATCGCTCTGGCGGCCCTGA
GTGGCATCTCGGTGCGGGCCGACGTGGCGCGATACGAGGAGGCGGGGGTC
TCCGTCGTCCTCGTGGGCGAGACCCTGATGCGAGCTTCTGACCCCTCTCT
CGCAGTCCGAGAGCTCTTGGGCCTGGAAAGGGATGCTCAGGGGGGTGCAA
CGTTGGTCAAGGTCTGCGGGATCACGCGAGTGGAGGACGCGCTCTGGGCG
GCGCGGGCAGGGGTAAATTTGATCGGCACGATCTTCTGTCCCTCCAAGCG
GCAAGTGACGGCCTCGGAGAGTGCGGCGGTGGTGCAGGCGGTGCGAGGCT
TTGGGGAACGGAGCGAGCGGGTCTTGGAGTATTCGGAGACCGTGCAGGAC
AAGGCGGGACCCGTGGCGCCCCTGTCCCCGGCGTGGTTCGCCCACTGGAG
GGGGGTCTTACAGCGGGTGACGCGTCGGACCCCTCTGGTTGTGGGCGTCT
TCCAGAACAACACGGTGGAGGAGGTGGCGGCCGCAGTGGAAGCTTCGGGC
GTGGATTTGGTCCAACTGCACGGGGACGAGGGCGTGGGCTTCGCCGCGGC
CCTCTCCCGCCTGACGGGGGTACCCTGCCTGAAGGTCTTGCACGTCCCGC
ACAACGGGGGCGAGCTCGGCCATGTCCTGGCGGGTTTGGAGCAGGCGCCG
GAGGAGCAAGAGGAAGGTGGGGCGACCGGGGGGCCTATCGCGCTCTTGCT
CGATACGTCGGTGGGGAACCAGAAGGGCGGGAGCGGCGCCAAGTTCGATT
GGAGCCTGGCCGCCCGGGCCCAAGCTTTAGGATACCCGGTGATTGTGGCG
GGGGGACTGCTTCCGGAGAACGTGGAAGAGGCCCTGAGGGTCGCGGATCC
CTTCGGCGTGGACGTCTCGAGCGGGGTGGAGGATTCTCCGGGCCAAAAGG
AGGCGAGGAAAGTGACGGATTTCGTGGACAGGGTCAGGGCTTTCAAGTGA
GAGAGGTGCAGGCCCCTCTGGCAGCGCGTGATGCGGGCGGTTGATTTGGA
TAAGGTCCACTGGCAAAGCATGTACGCCGTGCGGCGAGACTGATTCTCGG
GCCATAAAG

protein sequence of rna4533

>rna4533-protein ID=rna4533-protein|Name=rna4533|organism=Nannochloropsis gaditana|type=polypeptide|length=702bp
MSLVLTRVANKDPSYRIPTPSNQLYSQDVVVQGVCQVVIRAVIMQSSSIA
GDAAMDLPGDGKNRTESTQKRDENDGTLDKTAFEQLPLSFGGSKKVNAPR
ALSKNAMAEGIAEMMKEIEAAERRRAEGEARQGEAMRNQEEDEDRQQTSG
EEPLPSEASVQPSSSSSSHQVSSLRPAPAKRKEETQLEEEETPAATARRY
RIPMSHEVILRGHYKQITCLAMDPSGARVGVGGTDNKLLLYDFGGMDRSH
KPFREFVPEDGNPVVGVGWSPTGDRLVVATGSSQAKVFDRDGIRLLTCIK
GDPYITDLVHTKGHTMSLSAAAWHPREKETIMTASWDGTLRLWDLQGPQS
FDQLLNKRVIKARSARSTRVAVTCGVFSPVADYVAAGCQDGSVQLFSLRK
TSWIKPDVLMRPAHGPDQHVTAVAFAPDGKTLASRGTDDMVRLWDIRKPQ
APLKTLEGVATFYDSANLAFSPDGRVLCCGTNVPPKQEGATGTLKYFQVQ
GPSLEAVLTVGVAPGASVTNLTWHPRLKQVVCGTSSGATKVLYDPSFSVK
GALMSSQRVKRPSDPMDAAPVGGVVGRIINPSALPMFRDDEETGKKKRAR
LDRADPIKSKRPDLPVNGPGAQGRVSGMTNFTQYVMQTKQKNTMMEEDPR
EAILKYAEKAKEGTQLVGRAYAKTAPKTPFLEKTLEQEVEDMKEMEAEIL
KK

mRNA from alignment at CM002463.1:854015..856634-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4533 ID=rna4533|Name=rna4533|organism=Nannochloropsis gaditana|type=mRNA|length=2620bp|location=Sequence derived from alignment at CM002463.1:854015..856634- (Nannochloropsis gaditana)
GAATTAAAGGCACCCTCATGTGTCCCTTTTCAAGCAGTTGGGGTTTGCGT
ACGCCGCACATGGACGACCAGGGCATCGGAGAAATACCCGCCAGGCGGTC
GCTTTCGCATGTCGCTCGTGCTCACTCGGGTCGCAAACAAAGACCCGTCT
TATCGGATTCCAACCCCTTCAAACCAACTATATTCACAGGACGTAGTCGT
GCAGGGGGTGTGCCAGGTTGTTATCCGTGCGGTGATAATGCAGTCGAGTT
CAATTGCTGGTGATGCCGCGATGGACCTTCCTGGAGATGGGAAAAACAGA
ACGGAGTCAACACAGAAACGTGATGAGAACGATGGCACGCTTGACAAGAC
TGCTTTCGAGCAGTTACCTCTGTCGTTTGGTGGATCGAAAAAGGTGAATG
CACCAAGGGCTTTGAGCAAGAACGCGATGGCCGAAGGGATCGCGGAAATG
ATGAAGGAAATCGAGGCGGCTGAGAGGAGGCGCGCAGAGGGAGAGGCACG
GCAGGGAGAAGCGATGAGGAACCAGGAGGAAGACGAGGACAGACAGCAAA
CGTCCGGCGAGGAACCGCTGCCATCGGAAGCTTCGGTGCAACCCTCCTCC
TCCTCTTCGTCCCATCAAGTATCCTCCTTGCGACCTGCGCCGGCCAAAAG
AAAGGAGGAGACGCAGTTGGAAGAGGAGGAAACACCGGCAGCGACAGCTC
GTCGCTACCGGATCCCCATGTCCCACGAAGTCATCCTCCGCGGGCATTAT
AAGCAAATAACCTGCCTGGCCATGGACCCGTCGGGGGCCCGGGTCGGGGT
CGGAGGGACGGACAACAAGCTCCTCCTCTATGACTTCGGAGGTATGGACC
GTAGCCACAAACCCTTCCGGGAATTCGTGCCCGAGGACGGCAATCCCGTC
GTGGGGGTGGGCTGGAGCCCCACGGGTGATCGGCTGGTGGTGGCCACGGG
CTCCTCGCAGGCCAAGGTCTTCGACCGGGACGGCATCCGCCTGCTGACCT
GCATCAAGGGGGACCCCTACATCACGGACCTCGTGCACACCAAGGGCCAC
ACCATGTCGCTCTCGGCCGCGGCCTGGCACCCCCGGGAGAAGGAGACGAT
CATGACCGCCTCATGGGACGGGACCCTCCGCCTCTGGGACCTGCAGGGCC
CGCAGTCCTTCGACCAGCTCCTGAACAAGCGCGTCATCAAAGCCCGTTCG
GCCCGGAGCACCAGGGTGGCCGTCACCTGCGGCGTCTTCTCCCCCGTGGC
CGACTACGTGGCGGCGGGCTGCCAGGACGGGTCTGTCCAGCTCTTCTCCC
TGCGCAAGACCAGCTGGATCAAGCCCGACGTCCTCATGCGCCCGGCCCAC
GGCCCCGACCAGCACGTGACGGCCGTCGCGTTCGCCCCCGACGGGAAGAC
GCTGGCCTCGCGGGGCACGGACGACATGGTGCGCCTGTGGGACATCCGGA
AGCCGCAGGCCCCGCTCAAGACCCTGGAGGGCGTGGCGACCTTCTACGAC
TCCGCCAACCTGGCCTTCTCTCCCGATGGCCGCGTGCTCTGCTGCGGCAC
CAACGTCCCCCCCAAGCAGGAGGGAGCGACGGGGACGCTCAAGTACTTCC
AAGTGCAAGGCCCGAGCCTGGAGGCGGTGCTGACCGTGGGGGTGGCCCCC
GGCGCCAGCGTGACCAACCTGACGTGGCACCCGCGCCTGAAGCAAGTGGT
GTGTGGGACATCCTCGGGGGCGACCAAGGTGCTGTACGACCCTTCCTTCA
GCGTCAAGGGGGCGCTGATGAGCAGCCAGCGGGTGAAGAGGCCGAGCGAT
CCGATGGACGCGGCCCCGGTGGGGGGGGTGGTGGGCAGGATCATCAACCC
GTCGGCGTTGCCCATGTTCCGCGATGACGAGGAGACAGGGAAGAAGAAGA
GAGCGAGGTTGGACCGGGCGGACCCGATCAAGAGCAAGCGGCCCGACCTC
CCGGTGAATGGGCCGGGGGCGCAAGGGCGGGTGAGCGGGATGACGAATTT
CACGCAGTACGTGATGCAGACGAAGCAGAAGAACACGATGATGGAGGAGG
ATCCGCGGGAGGCGATTTTAAAGTATGCGGAGAAGGCGAAGGAGGGGACG
CAGCTTGTGGGGAGGGCGTATGCCAAGACGGCGCCCAAGACTCCCTTCCT
AGAAAAGACCTTGGAGCAGGAGGTGGAGGATATGAAAGAGATGGAGGCGG
AGATTCTCAAAAAGTGAGGGCGGGATCCGACCGGGCAGACGGCGGGAGAA
ATTCCTCGGGAGGTGCGCGTGAGTGGGGTTGGGCTTGATCATGTACAGCG
TGAGTTCGATACAGCAAAGGAAAACTGAGAAGAACAAATTAAGCAAGCAA
TCTTTATGGCCCGAGAATCAGTCTCGCCGCACGGCGTACATGCTTTGCCA
GTGGACCTTATCCAAATCAACCGCCCGCATCACGCGCTGCCAGAGGGGCC
TGCACCTCTCTCACTTGAAAGCCCTGACCCTGTCCACGAAATCCGTCACT
TTCCTCGCCTCCTTTTGGCCCGGAGAATCCTCCACCCCGCTCGAGACGTC
CACGCCGAAGGGATCCGCGACCCTCAGGGCCTCTTCCACGTTCTCCGGAA
GCAGTCCCCCCGCCACAATC

Coding sequence (CDS) from alignment at CM002463.1:854015..856634-

>rna4533 ID=rna4533|Name=rna4533|organism=Nannochloropsis gaditana|type=CDS|length=2109bp|location=Sequence derived from alignment at CM002463.1:854015..856634- (Nannochloropsis gaditana)
ATGTCGCTCGTGCTCACTCGGGTCGCAAACAAAGACCCGTCTTATCGGAT
TCCAACCCCTTCAAACCAACTATATTCACAGGACGTAGTCGTGCAGGGGG
TGTGCCAGGTTGTTATCCGTGCGGTGATAATGCAGTCGAGTTCAATTGCT
GGTGATGCCGCGATGGACCTTCCTGGAGATGGGAAAAACAGAACGGAGTC
AACACAGAAACGTGATGAGAACGATGGCACGCTTGACAAGACTGCTTTCG
AGCAGTTACCTCTGTCGTTTGGTGGATCGAAAAAGGTGAATGCACCAAGG
GCTTTGAGCAAGAACGCGATGGCCGAAGGGATCGCGGAAATGATGAAGGA
AATCGAGGCGGCTGAGAGGAGGCGCGCAGAGGGAGAGGCACGGCAGGGAG
AAGCGATGAGGAACCAGGAGGAAGACGAGGACAGACAGCAAACGTCCGGC
GAGGAACCGCTGCCATCGGAAGCTTCGGTGCAACCCTCCTCCTCCTCTTC
GTCCCATCAAGTATCCTCCTTGCGACCTGCGCCGGCCAAAAGAAAGGAGG
AGACGCAGTTGGAAGAGGAGGAAACACCGGCAGCGACAGCTCGTCGCTAC
CGGATCCCCATGTCCCACGAAGTCATCCTCCGCGGGCATTATAAGCAAAT
AACCTGCCTGGCCATGGACCCGTCGGGGGCCCGGGTCGGGGTCGGAGGGA
CGGACAACAAGCTCCTCCTCTATGACTTCGGAGGTATGGACCGTAGCCAC
AAACCCTTCCGGGAATTCGTGCCCGAGGACGGCAATCCCGTCGTGGGGGT
GGGCTGGAGCCCCACGGGTGATCGGCTGGTGGTGGCCACGGGCTCCTCGC
AGGCCAAGGTCTTCGACCGGGACGGCATCCGCCTGCTGACCTGCATCAAG
GGGGACCCCTACATCACGGACCTCGTGCACACCAAGGGCCACACCATGTC
GCTCTCGGCCGCGGCCTGGCACCCCCGGGAGAAGGAGACGATCATGACCG
CCTCATGGGACGGGACCCTCCGCCTCTGGGACCTGCAGGGCCCGCAGTCC
TTCGACCAGCTCCTGAACAAGCGCGTCATCAAAGCCCGTTCGGCCCGGAG
CACCAGGGTGGCCGTCACCTGCGGCGTCTTCTCCCCCGTGGCCGACTACG
TGGCGGCGGGCTGCCAGGACGGGTCTGTCCAGCTCTTCTCCCTGCGCAAG
ACCAGCTGGATCAAGCCCGACGTCCTCATGCGCCCGGCCCACGGCCCCGA
CCAGCACGTGACGGCCGTCGCGTTCGCCCCCGACGGGAAGACGCTGGCCT
CGCGGGGCACGGACGACATGGTGCGCCTGTGGGACATCCGGAAGCCGCAG
GCCCCGCTCAAGACCCTGGAGGGCGTGGCGACCTTCTACGACTCCGCCAA
CCTGGCCTTCTCTCCCGATGGCCGCGTGCTCTGCTGCGGCACCAACGTCC
CCCCCAAGCAGGAGGGAGCGACGGGGACGCTCAAGTACTTCCAAGTGCAA
GGCCCGAGCCTGGAGGCGGTGCTGACCGTGGGGGTGGCCCCCGGCGCCAG
CGTGACCAACCTGACGTGGCACCCGCGCCTGAAGCAAGTGGTGTGTGGGA
CATCCTCGGGGGCGACCAAGGTGCTGTACGACCCTTCCTTCAGCGTCAAG
GGGGCGCTGATGAGCAGCCAGCGGGTGAAGAGGCCGAGCGATCCGATGGA
CGCGGCCCCGGTGGGGGGGGTGGTGGGCAGGATCATCAACCCGTCGGCGT
TGCCCATGTTCCGCGATGACGAGGAGACAGGGAAGAAGAAGAGAGCGAGG
TTGGACCGGGCGGACCCGATCAAGAGCAAGCGGCCCGACCTCCCGGTGAA
TGGGCCGGGGGCGCAAGGGCGGGTGAGCGGGATGACGAATTTCACGCAGT
ACGTGATGCAGACGAAGCAGAAGAACACGATGATGGAGGAGGATCCGCGG
GAGGCGATTTTAAAGTATGCGGAGAAGGCGAAGGAGGGGACGCAGCTTGT
GGGGAGGGCGTATGCCAAGACGGCGCCCAAGACTCCCTTCCTAGAAAAGA
CCTTGGAGCAGGAGGTGGAGGATATGAAAGAGATGGAGGCGGAGATTCTC
AAAAAGTGA

Synonyms

Publications