rna452, rna452 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna452
Unique Name	rna452
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1149
Alignment location	CM002455.1:1124575..1126829 -

Link to JBrowse

Properties


Property Name	Value
Product	udp-galactopyranose mutase
Orig transcript id	gnl\|cribi\|Naga_100003g29.1746.mrna
Orig protein id	gnl\|cribi\|Naga_100003g29.1746
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1124575..1126829 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g29	gene436	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna452	rna452-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30229.1	cds452	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1124575..1126829-
coding sequence from alignment at CM002455.1:1124575..1126829-

mRNA sequence

>rna452 ID=rna452|Name=rna452|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
ATTATTGTTGTCCATGCTCACGTGCAACACATGCAGGAAGACGGACCGAG
ACATACTGTTCCCGTTCACCGCGGTGGCAAAGGAAGGATGACATCATTCA
TCAAAATCGTGTCCTACCTCTTCTTTGTTGTAACTCTATCACTAGCCCTC
GCATTGGGCTACCTACGGCAAAATCCTGAATTCAGGCATCGCTGGTTTGC
CAGCGTATGTACGTGCCTGGTGTCCAACCAACCGGAGCAGCACGCGATAC
GCTGCGACCTCCTGAAAGACGTGCGAGGAGACGTGCTTGAATTAGGACCA
GGACCCGCTACTAATATGGAATGCTTTGAGGGCAAAACGAGCATTACATC
TTACACGGGAATCGAACCCAATGTCTTTCTGCACGAAGTGTTTCGGAATA
AAACCGCGCACTTATCTTTGCCCTTCCCCCTCGAACTCAAAACGCTGGAA
GGCGAGCACTCCGGCTTGCCGGACGAAATGTTTGACACAGTGGTCTTCAC
ACACGTCTTGTGCAGCGTCCACAATGCCACGCAGGTGCTAGCCGAAGTGG
ATCGCGTCCTCAAACCGGGAGGGCGCGTCTTCTTCTTGGAGCATATCGCC
AGCCCCCCCGGGTCATGGATGCGTTTTTTCCAGAAAACGATCGAGCCCGT
TTGGTCGATTGCTTTGGATGGTTGCAAATTTCCCGATACGCATCTTCTCT
TGGAACGGTTCAAAAATCAAGGCAAGGAAGGATTTGAGGTCATGTATCAC
TTCTTCGATGCGCCCATGCCCTTGGCTATCGTAAAACCCCACCTGATGGG
CCACGCCGTGAAGAAAGGCAGGGAGGCCGGAGAGCAGTGAAAAAATTGTG
CATGCACTTTTATAAGGAAACCTAGCGTTCGGTGGTTTGTGTGACAAGAA
AAGGTCAAAGGTGCGCGTCGGAAATTACCCTCAAAAACCTACAGATACAA
AGCAAGCTGGTATGTTACTGTCGAGACTTCCTTTTTGGGGGCATAGGGGA
CCATGTAATTCGTAGTCTTAAGCACTTTGAAATTTGAGTCATCCGTGGTT
CTTCATGGAAGTTCTTCGCTGAGCTCATGCGGCGGTTGGCGCCACATTCG
AGGGGCTTGGCCTTCTCTTCCCACCCTTGCCCTCCTTATCGCCATCGAT

protein sequence of rna452

>rna452-protein ID=rna452-protein|Name=rna452|organism=Nannochloropsis gaditana|type=polypeptide|length=611bp
MRACSSPSGAVPCSSKRYRFMAPTEEPPIVVIGSGPCGLGAAHRLHEIGV
KNFIVLEAGSEPGGLSVTATDEEGFLWDMGGHVIFSHYNYFDKVLDHIVR
DWCKRERVSYIWQKGRFIPYPFQNNIHRLSAEDFHECIDGLVEMQQQNIS
RLTKPRTFLEWLQNNFGRGIVNLFMAPYNRKVWGYEPSEMNAAWMEDRVA
TVDLTRIKEHKGNGTNDTTWGPNHTFRFPLRGGTGFIWRRIYEGIDLSKF
RFNSEIVAVDADRKLLRLADGSDLPYRNLISTMPLDRLCGLVVGRGLEDL
PALVPRFRYSSTHVVGIGVAGQPPAHLQGQCWMYFPEDDCPFYRVTVFSN
YSPYNVPMPGQQWSLMAEVCETAARPVDPSNIVDSVLQGFYTVKLLNVER
DKVISRFHRRLEYGYPTPFLEREEVCGRALEALEAKDIKSRGRFGAWKYE
VSNQDHSMMQGVEAVDAIVMGAEETTVRLPGVVNSKAWKKAQSCARRCHQ
AVERGQKKKGLEKRKGQERGDRKLRYYDPLALTVLLKKGWSMGKAESAAL
IDTCETAHFNDPGITGRETCHRQGGSEAIGSTETKDRIDGDKEGKGGKRR
PSPSNVAPTAA

mRNA from alignment at CM002455.1:1124575..1126829-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna452 ID=rna452|Name=rna452|organism=Nannochloropsis gaditana|type=mRNA|length=2255bp|location=Sequence derived from alignment at CM002455.1:1124575..1126829- (Nannochloropsis gaditana)
AACGGTCTGAATGAGATGGGATTAAGTATGCACGCCAACTTGATGCTGTC
CAACATCAGATAAAGATTGTCTTATCACACCATGATCAACAACGTTTTGA
AACAGCCTGTATTTCCATTATCGTGTTATTCACACAGCTCTTACCTTCAT
GAGGGCATGTTCTTCCCCCTCTGGGGCCGTCCCGTGCTCGTCGAAGAGAT
ATAGATTCATGGCTCCCACAGAGGAGCCTCCAATCGTTGTCATCGGCTCT
GGACCTTGTGGCTTAGGCGCTGCACATCGTTTGCATGAGATTGGGGTAAA
AAACTTTATCGTATTGGAGGCTGGCTCCGAACCGGGTGGCCTGTCAGTAA
CGGCAACAGACGAGGAGGGCTTCCTTTGGGATATGGGTAAGTTTCTTCTA
CCTTTACTTCGTTCATTCAAATGTTTGCTTTTCATATCGTATCAATAAAG
TAAATCCGCATCGAAGTGTCAATTCGATGGCTTTCTTGATTTTTCAATGT
TAAAATTCACGATCGAGTCCTCATCCCTATCACGCAACTTGATGTCCAGG
AGGCCATGTGATCTTCTCTCACTATAATTACTTTGACAAAGTGTTGGACC
ACATTGTAAGAGACTGGTGTAAGCGAGAGCGTGTGAGCTATATCTGGCAA
AAAGGTCGATTTATTCCCTATCCTTTTCAGAACAATATCCACCGCTTGTC
CGCGGAAGACTTTCACGAGTGCATAGACGGCCTCGTTGAAATGCAGCAGC
AGAATATATCACGCCTGACTAAGCCACGTACATTTCTCGAATGGCTTCAA
AATAATTTCGGCCGAGGCATTGTGAACCTTTTTATGGCACCGTATAACCG
CAAGGTTTGGGGTTACGAACCAAGTGAGATGAACGCTGCCTGGATGGAGG
ATCGGGTTGCTACCGTGGATTTGACCCGTATCAAGGAGCACAAAGGGAAC
GGTACCAACGACACCACTTGGGGTCCCAATCACACCTTTCGCTTCCCGCT
GCGAGGAGGAACAGGCTTCATCTGGCGGAGGATCTACGAGGGAATTGACC
TGAGCAAGTTTAGATTCAATTCAGAGATTGTGGCCGTGGACGCTGACAGG
AAGCTACTTAGGCTCGCGGACGGATCGGACTTGCCGTACAGAAATTTGAT
CAGCACGATGCCGTTGGATCGACTGTGCGGGCTCGTGGTGGGGAGAGGCC
TAGAAGACTTGCCTGCCCTCGTGCCACGGTTCCGATACTCCTCCACCCAT
GTCGTTGGGATCGGGGTGGCCGGCCAACCGCCCGCTCACTTGCAAGGCCA
GTGTTGGATGTATTTCCCCGAAGACGATTGTCCATTTTACCGGGTCACAG
TCTTTTCGAATTATTCGCCCTATAACGTTCCCATGCCGGGTCAGCAATGG
TCCCTCATGGCGGAGGTCTGCGAGACGGCGGCGCGGCCCGTGGATCCCTC
TAACATCGTCGACTCGGTCTTGCAAGGCTTCTACACTGTAAAGCTTCTCA
ACGTAGAACGGGACAAGGTCATTTCTCGTTTCCATCGTCGACTGGAGTAC
GGGTATCCGACCCCTTTTCTGGAAAGGGAGGAGGTTTGCGGGCGGGCCCT
GGAGGCACTGGAGGCAAAAGACATCAAATCGCGCGGCCGCTTCGGGGCTT
GGAAATACGAAGTCAGCAACCAGGATCACAGCATGATGCAGGGTGTGGAG
GCGGTGGACGCCATTGTGATGGGCGCTGAGGAGACAACCGTGCGGTTGCC
TGGGGTAGTGAATTCCAAAGCCTGGAAGAAGGCACAGAGCTGCGCCCGTC
GATGCCATCAAGCGGTCGAGCGAGGTCAGAAGAAAAAGGGATTAGAAAAA
AGAAAAGGACAAGAGAGAGGTGACAGGAAATTGCGGTACTACGATCCCTT
GGCTCTGACGGTGCTCTTGAAGAAGGGTTGGTCGATGGGCAAGGCAGAGT
CCGCGGCGTTGATAGACACGTGCGAGACAGCGCACTTTAACGATCCGGGC
ATCACGGGACGTGAGACATGTCACCGTCAGGGGGGGAGTGAGGCGATCGG
CTCCACGGAGACAAAGGACAGAATCGATGGCGATAAGGAGGGCAAGGGTG
GGAAGAGAAGGCCAAGCCCCTCGAATGTGGCGCCAACCGCCGCATGAGCT
CAGCGAAGAACTTCCATGAAGAACCACGGATGACTCAAATTTCAAAGTGC
TTAAGACTACGAATTACATGGTCCCCTATGCCCCCAAAAAGGAAGTCTCG
ACAGT

Coding sequence (CDS) from alignment at CM002455.1:1124575..1126829-

>rna452 ID=rna452|Name=rna452|organism=Nannochloropsis gaditana|type=CDS|length=3672bp|location=Sequence derived from alignment at CM002455.1:1124575..1126829- (Nannochloropsis gaditana)
GAGGCCATGTGATCTTCTCTCACTATAATTACTTTGACAAAGTGTTGGAC
CACATTGTAAGAGACTGGTGTAAGCGAGAGCGTGTGAGCTATATCTGGCA
AAAAGGTCGATTTATTCCCTATCCTTTTCAGAACAATATCCACCGCTTGT
CCGCGGAAGACTTTCACGAGTGCATAGACGGCCTCGTTGAAATGCAGCAG
CAGAATATATCACGCCTGACTAAGCCACGTACATTTCTCGAATGGCTTCA
AAATAATTTCGGCCGAGGCATTGTGAACCTTTTTATGGCACCGTATAACC
GCAAGGTTTGGGGTTACGAACCAAGTGAGATGAACGCTGCCTGGATGGAG
GATCGGGTTGCTACCGTGGATTTGACCCGTATCAAGGAGCACAAAGGGAA
CGGTACCAACGACACCACTTGGGGTCCCAATCACACCTTTCGCTTCCCGC
TGCGAGGAGGAACAGGCTTCATCTGGCGGAGGATCTACGAGGGAATTGAC
CTGAGCAAGTTTAGATTCAATTCAGAGATTGTGGCCGTGGACGCTGACAG
GAAGCTACTTAGGCTCGCGGACGGATCGGACTTGCCGTACAGAAATTTGA
TCAGCACGATGCCGTTGGATCGACTGTGCGGGCTCGTGGTGGGGAGAGGC
CTAGAAGACTTGCCTGCCCTCGTGCCACGGTTCCGATACTCCTCCACCCA
TGTCGTTGGGATCGGGGTGGCCGGCCAACCGCCCGCTCACTTGCAAGGCC
AGTGTTGGATGTATTTCCCCGAAGACGATTGTCCATTTTACCGGGTCACA
GTCTTTTCGAATTATTCGCCCTATAACGTTCCCATGCCGGGTCAGCAATG
GTCCCTCATGGCGGAGGTCTGCGAGACGGCGGCGCGGCCCGTGGATCCCT
CTAACATCGTCGACTCGGTCTTGCAAGGCTTCTACACTGTAAAGCTTCTC
AACGTAGAACGGGACAAGGTCATTTCTCGTTTCCATCGTCGACTGGAGTA
CGGGTATCCGACCCCTTTTCTGGAAAGGGAGGAGGTTTGCGGGCGGGCCC
TGGAGGCACTGGAGGCAAAAGACATCAAATCGCGCGGCCGCTTCGGGGCT
TGGAAATACGAAGTCAGCAACCAGGATCACAGCATGATGCAGGGTGTGGA
GGCGGTGGACGCCATTGTGATGGGCGCTGAGGAGACAACCGTGCGGTTGC
CTGGGGTAGTGAATTCCAAAGCCTGGAAGAAGGCACAGAGCTGCGCCCGT
CGATGCCATCAAGCGGTCGAGCGAGGTCAGAAGAAAAAGGGATTAGAAAA
AAGAAAAGGACAAGAGAGAGGTGACAGGAAATTGCGGTACTACGATCCCT
TGGCTCTGACGGTGCTCTTGAAGAAGGGTTGGTCGATGGGCAAGGCAGAG
TCCGCGGCGTTGATAGACACGTGCGAGACAGCGCACTTTAACGATCCGGG
CATCACGGGACGTGAGACATGTCACCGTCAGGGGGGGAGTGAGGCGATCG
GCTCCACGGAGACAAAGGACAGAATCGATGGCGATAAGGAGGGCAAGGGT
GGGAAGAGAAGGCCAAGCCCCTCGAATGTGGCGCCAACCGCCGCATGAAT
GAGGGCATGTTCTTCCCCCTCTGGGGCCGTCCCGTGCTCGTCGAAGAGAT
ATAGATTCATGGCTCCCACAGAGGAGCCTCCAATCGTTGTCATCGGCTCT
GGACCTTGTGGCTTAGGCGCTGCACATCGTTTGCATGAGATTGGGGTAAA
AAACTTTATCGTATTGGAGGCTGGCTCCGAACCGGGTGGCCTGTCAGTAA
CGGCAACAGACGAGGAGGGCTTCCTTTGGGATATGGGAGGCCATGTGATC
TTCTCTCACTATAATTACTTTGACAAAGTGTTGGACCACATTGTAAGAGA
CTGGTGTAAGCGAGAGCGTGTGAGCTATATCTGGCAAAAAGGTCGATTTA
TTCCCTATCCTTTTCAGAACAATATCCACCGCTTGTCCGCGGAAGACTTT
CACGAGTGCATAGACGGCCTCGTTGAAATGCAGCAGCAGAATATATCACG
CCTGACTAAGCCACGTACATTTCTCGAATGGCTTCAAAATAATTTCGGCC
GAGGCATTGTGAACCTTTTTATGGCACCGTATAACCGCAAGGTTTGGGGT
TACGAACCAAGTGAGATGAACGCTGCCTGGATGGAGGATCGGGTTGCTAC
CGTGGATTTGACCCGTATCAAGGAGCACAAAGGGAACGGTACCAACGACA
CCACTTGGGGTCCCAATCACACCTTTCGCTTCCCGCTGCGAGGAGGAACA
GGCTTCATCTGGCGGAGGATCTACGAGGGAATTGACCTGAGCAAGTTTAG
ATTCAATTCAGAGATTGTGGCCGTGGACGCTGACAGGAAGCTACTTAGGC
TCGCGGACGGATCGGACTTGCCGTACAGAAATTTGATCAGCACGATGCCG
TTGGATCGACTGTGCGGGCTCGTGGTGGGGAGAGGCCTAGAAGACTTGCC
TGCCCTCGTGCCACGGTTCCGATACTCCTCCACCCATGTCGTTGGGATCG
GGGTGGCCGGCCAACCGCCCGCTCACTTGCAAGGCCAGTGTTGGATGTAT
TTCCCCGAAGACGATTGTCCATTTTACCGGGTCACAGTCTTTTCGAATTA
TTCGCCCTATAACGTTCCCATGCCGGGTCAGCAATGGTCCCTCATGGCGG
AGGTCTGCGAGACGGCGGCGCGGCCCGTGGATCCCTCTAACATCGTCGAC
TCGGTCTTGCAAGGCTTCTACACTGTAAAGCTTCTCAACGTAGAACGGGA
CAAGGTCATTTCTCGTTTCCATCGTCGACTGGAGTACGGGTATCCGACCC
CTTTTCTGGAAAGGGAGGAGGTTTGCGGGCGGGCCCTGGAGGCACTGGAG
GCAAAAGACATCAAATCGCGCGGCCGCTTCGGGGCTTGGAAATACGAAGT
CAGCAACCAGGATCACAGCATGATGCAGGGTGTGGAGGCGGTGGACGCCA
TTGTGATGGGCGCTGAGGAGACAACCGTGCGGTTGCCTGGGGTAGTGAAT
TCCAAAGCCTGGAAGAAGGCACAGAGCTGCGCCCGTCGATGCCATCAAGC
GGTCGAGCGAGGTCAGAAGAAAAAGGGATTAGAAAAAAGAAAAGGACAAG
AGAGAGGTGACAGGAAATTGCGGTACTACGATCCCTTGGCTCTGACGGTG
CTCTTGAAGAAGGGTTGGTCGATGGGCAAGGCAGAGTCCGCGGCGTTGAT
AGACACGTGCGAGACAGCGCACTTTAACGATCCGGGCATCACGGGACGTG
AGACATGTCACCGTCAGGGGGGGAGTGAGGCGATCGGCTCCACGGAGACA
AAGGACAGAATCGATGGCGATAAGGAGGGCAAGGGTGGGAAGAGAAGGCC
AAGCCCCTCGAATGTGGCGCCAACCGCCGCATGAATGAGGGCATGTTCTT
CCCCCTCTGGGGCCGTCCCGTGCTCGTCGAAGAGATATAGATTCATGGCT
CCCACAGAGGAGCCTCCAATCGTTGTCATCGGCTCTGGACCTTGTGGCTT
AGGCGCTGCACATCGTTTGCATGAGATTGGGGTAAAAAACTTTATCGTAT
TGGAGGCTGGCTCCGAACCGGGTGGCCTGTCAGTAACGGCAACAGACGAG
GAGGGCTTCCTTTGGGATATGG

Synonyms

Publications