rna4516, rna4516 (mRNA) Nannochloropsis gaditana

Overview
Namerna4516
Unique Namerna4516
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationCM002463.1:813161..814509 -

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Properties
Property NameValue
Productinitiation factor 3g
Orig transcript idgnl|cribi|Naga_100121g8.10143.mrna
Orig protein idgnl|cribi|Naga_100121g8.10143
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:813161..814509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100121g8gene4358Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4516rna4516-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26171.1cds4505Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4516 ID=rna4516|Name=rna4516|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGGCGTTAGAAAGTCTCTTGAAGGTGACAGAGGATGGGGTGGACGAAGG
TACAGGGTCAGGCAACACCGCCCTAAATGAAGGCCTACCCCCCTCCGGCC
TACCTCATCCATCATCCATGATTACATGGGAGGGGACGAAGGAAAGACCC
ACATTTCAGCCGGCAAGCCTCTACCCACCCCCACCAGAGCCCTTCACCTC
CCGCTGA
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protein sequence of rna4516

>rna4516-protein ID=rna4516-protein|Name=rna4516|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MRRVAEPPIVVVMSREVQDWGDYEDDEELPQPVEGKPDENGVVTRTEWAW
KDQRKVRYVQKFKVEEITTHVPKRTFVRKTWARFGDARDAHVRAEEQSIA
IEDPHSLAEDEPAADLKNLGLIQQKLAARKAGLLPSTTPGESFAEYDGGS
GIGGMNGGEEGAPRRTMGERFGGGGPGPQTGPGGREEDKFPTIRVTNVSE
DTTDDDLKNLFGRFGVLHRVFLAKDKERNTSRGFAFVSFLKKEDAQKAMD
SLQGYGYDHLILRLEWANPPTQRREERDGLAGGFVSGYGQRLAQDTTMAY
STASNLTHGTER
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mRNA from alignment at CM002463.1:813161..814509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4516 ID=rna4516|Name=rna4516|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp|location=Sequence derived from alignment at CM002463.1:813161..814509- (Nannochloropsis gaditana)
ATGCGCAGAGTTAGTGTGTGTGAACGAGAGCAATCCACTGTTGCAACCTC
CCCTCTTGTTTTGTGGTTGTGTGTGCATCCTTTCTTTCTTCCGACTTTGC
GGTGGTGCACATGCTCGCTTTGTTGGACATAAATCAAGAGCTGCACGTCT
TATCCTAGCTGCTCCTATTATTGACATGTCGTGTCCCTACACTTTTGACG
CTTATCTCCTTTTACTGCCGCTTGCAGGTCGCGGAGCCACCGATCGTTGT
TGTCATGTCGCGCGAGGTGCAGGACTGGGGAGACTATGAAGATGATGAGG
AGCTCCCCCAACCAGTCGAGGTGAGTGACCCGACAGCGTAGAGTCACGGC
GTGAGGCGTTTCATCAATATCGTTGATGTGATGCCGTGTACAAGCTTCCA
CCCCGCAGATGTGAGCCTGTCGGCACACACACGTTCGCCAAGCCTCCTCC
CCCCACCACGCTCACTCTCTGCCATCACAAATCCCTTTGCCACACAACGT
CCTTTTATATAGGGAAAACCTGACGAAAATGGTGTAGTGACGCGGACAGA
GTGGGCATGGAAAGACCAGCGGAAAGTTCGATATGTTCAGAAATTCAAAG
TGGAAGAAATCACGACCCACGTTCCGAAACGAACATTCGTGCGCAAGACC
TGGGCCCGATTTGGGGACGCCCGCGATGCTCATGTCCGAGCCGAGGAGCA
AAGTATTGCGATTGAAGATCCTCACAGCCTGGCGGAAGATGAACCGGCCG
CAGATTTGAAGAACTTGGGCTTAATCCAACAAAAGCTAGCAGCACGAAAA
GCGGGTCTGCTGCCGTCGACAACCCCCGGAGAGTCTTTCGCCGAATACGA
TGGCGGCAGTGGGATTGGAGGAATGAATGGGGGAGAGGAAGGGGCTCCGC
GCCGGACCATGGGCGAGCGATTTGGTGGTGGAGGGCCAGGGCCCCAGACG
GGGCCGGGCGGGCGGGAAGAGGACAAGTTCCCAACGATCCGAGTGACAAA
CGTTTCGGAAGACACGACGGACGATGACTTGAAGAACCTCTTCGGCCGAT
TCGGCGTCTTGCATCGGGTGTTTTTGGCCAAGGACAAGGAGCGGAACACC
TCGCGGGGGTTCGCCTTCGTCTCCTTTCTGAAGAAGGAGGACGCGCAGAA
GGCGATGGACAGCCTGCAGGGGTATGGTTACGACCACCTGATCCTCCGCT
TGGAGTGGGCGAACCCTCCGACGCAACGGCGGGAGGAGAGGGATGGGCTT
GCCGGGGGGTTCGTGTCCGGCTACGGGCAGCGCTTGGCGCAGGACACGAC
CATGGCTTACTCGACGGCGTCGAACCTGACGCATGGGACGGAAAGATAA
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Coding sequence (CDS) from alignment at CM002463.1:813161..814509-

>rna4516 ID=rna4516|Name=rna4516|organism=Nannochloropsis gaditana|type=CDS|length=2817bp|location=Sequence derived from alignment at CM002463.1:813161..814509- (Nannochloropsis gaditana)
GGAAAACCTGACGAAAATGGTGTAGTGACGCGGACAGAGTGGGCATGGAA
AGACCAGCGGAAAGTTCGATATGTTCAGAAATTCAAAGTGGAAGAAATCA
CGACCCACGTTCCGAAACGAACATTCGTGCGCAAGACCTGGGCCCGATTT
GGGGACGCCCGCGATGCTCATGTCCGAGCCGAGGAGCAAAGTATTGCGAT
TGAAGATCCTCACAGCCTGGCGGAAGATGAACCGGCCGCAGATTTGAAGA
ACTTGGGCTTAATCCAACAAAAGCTAGCAGCACGAAAAGCGGGTCTGCTG
CCGTCGACAACCCCCGGAGAGTCTTTCGCCGAATACGATGGCGGCAGTGG
GATTGGAGGAATGAATGGGGGAGAGGAAGGGGCTCCGCGCCGGACCATGG
GCGAGCGATTTGGTGGTGGAGGGCCAGGGCCCCAGACGGGGCCGGGCGGG
CGGGAAGAGGACAAGTTCCCAACGATCCGAGTGACAAACGTTTCGGAAGA
CACGACGGACGATGACTTGAAGAACCTCTTCGGCCGATTCGGCGTCTTGC
ATCGGGTGTTTTTGGCCAAGGACAAGGAGCGGAACACCTCGCGGGGGTTC
GCCTTCGTCTCCTTTCTGAAGAAGGAGGACGCGCAGAAGGCGATGGACAG
CCTGCAGGGGTATGGTTACGACCACCTGATCCTCCGCTTGGAGTGGGCGA
ACCCTCCGACGCAACGGCGGGAGGAGAGGGATGGGCTTGCCGGGGGGTTC
GTGTCCGGCTACGGGCAGCGCTTGGCGCAGGACACGACCATGGCTTACTC
GACGGCGTCGAACCTGACGCATGGGACGGAAAGATAAGTCGCGGAGCCAC
CGATCGTTGTTGTCATGTCGCGCGAGGTGCAGGACTGGGGAGACTATGAA
GATGATGAGGAGCTCCCCCAACCAGTCGAGATGCGCAGAGGAAAACCTGA
CGAAAATGGTGTAGTGACGCGGACAGAGTGGGCATGGAAAGACCAGCGGA
AAGTTCGATATGTTCAGAAATTCAAAGTGGAAGAAATCACGACCCACGTT
CCGAAACGAACATTCGTGCGCAAGACCTGGGCCCGATTTGGGGACGCCCG
CGATGCTCATGTCCGAGCCGAGGAGCAAAGTATTGCGATTGAAGATCCTC
ACAGCCTGGCGGAAGATGAACCGGCCGCAGATTTGAAGAACTTGGGCTTA
ATCCAACAAAAGCTAGCAGCACGAAAAGCGGGTCTGCTGCCGTCGACAAC
CCCCGGAGAGTCTTTCGCCGAATACGATGGCGGCAGTGGGATTGGAGGAA
TGAATGGGGGAGAGGAAGGGGCTCCGCGCCGGACCATGGGCGAGCGATTT
GGTGGTGGAGGGCCAGGGCCCCAGACGGGGCCGGGCGGGCGGGAAGAGGA
CAAGTTCCCAACGATCCGAGTGACAAACGTTTCGGAAGACACGACGGACG
ATGACTTGAAGAACCTCTTCGGCCGATTCGGCGTCTTGCATCGGGTGTTT
TTGGCCAAGGACAAGGAGCGGAACACCTCGCGGGGGTTCGCCTTCGTCTC
CTTTCTGAAGAAGGAGGACGCGCAGAAGGCGATGGACAGCCTGCAGGGGT
ATGGTTACGACCACCTGATCCTCCGCTTGGAGTGGGCGAACCCTCCGACG
CAACGGCGGGAGGAGAGGGATGGGCTTGCCGGGGGGTTCGTGTCCGGCTA
CGGGCAGCGCTTGGCGCAGGACACGACCATGGCTTACTCGACGGCGTCGA
ACCTGACGCATGGGACGGAAAGATAAGTCGCGGAGCCACCGATCGTTGTT
GTCATGTCGCGCGAGGTGCAGGACTGGGGAGACTATGAAGATGATGAGGA
GCTCCCCCAACCAGTCGAGATGCGCAGAGGAAAACCTGACGAAAATGGTG
TAGTGACGCGGACAGAGTGGGCATGGAAAGACCAGCGGAAAGTTCGATAT
GTTCAGAAATTCAAAGTGGAAGAAATCACGACCCACGTTCCGAAACGAAC
ATTCGTGCGCAAGACCTGGGCCCGATTTGGGGACGCCCGCGATGCTCATG
TCCGAGCCGAGGAGCAAAGTATTGCGATTGAAGATCCTCACAGCCTGGCG
GAAGATGAACCGGCCGCAGATTTGAAGAACTTGGGCTTAATCCAACAAAA
GCTAGCAGCACGAAAAGCGGGTCTGCTGCCGTCGACAACCCCCGGAGAGT
CTTTCGCCGAATACGATGGCGGCAGTGGGATTGGAGGAATGAATGGGGGA
GAGGAAGGGGCTCCGCGCCGGACCATGGGCGAGCGATTTGGTGGTGGAGG
GCCAGGGCCCCAGACGGGGCCGGGCGGGCGGGAAGAGGACAAGTTCCCAA
CGATCCGAGTGACAAACGTTTCGGAAGACACGACGGACGATGACTTGAAG
AACCTCTTCGGCCGATTCGGCGTCTTGCATCGGGTGTTTTTGGCCAAGGA
CAAGGAGCGGAACACCTCGCGGGGGTTCGCCTTCGTCTCCTTTCTGAAGA
AGGAGGACGCGCAGAAGGCGATGGACAGCCTGCAGGGGTATGGTTACGAC
CACCTGATCCTCCGCTTGGAGTGGGCGAACCCTCCGACGCAACGGCGGGA
GGAGAGGGATGGGCTTGCCGGGGGGTTCGTGTCCGGCTACGGGCAGCGCT
TGGCGCAGGACACGACCATGGCTTACTCGACGGCGTCGAACCTGACGCAT
GGGACGGAAAGATAAGTCGCGGAGCCACCGATCGTTGTTGTCATGTCGCG
CGAGGTGCAGGACTGGGGAGACTATGAAGATGATGAGGAGCTCCCCCAAC
CAGTCGAGATGCGCAGA
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Synonyms
Publications