rna4515, rna4515 (mRNA) Nannochloropsis gaditana

Overview
Namerna4515
Unique Namerna4515
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3675
Alignment locationCM002463.1:812605..813151 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100121g7.10146.mrna
Orig protein idgnl|cribi|Naga_100121g7.10146
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:812605..813151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100121g7gene4357Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4515rna4515-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26174.1cds4504Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4515 ID=rna4515|Name=rna4515|organism=Nannochloropsis gaditana|type=mRNA|length=3675bp
ATGACCCACAAGCTGGTTACGTACCACGGCTTTGTCACGGAGGGCCGTAA
GCTCATCCCGCCGGGAGGGTCGGCCCGGGGCCAGCGTGGAGAGGATTACC
TTGAAGGCTTGGACGATTTGCAAGCCTACGTGCTCGAGAAGATACAGGGT
CTCCCGCCCACGCAGGACAACCCCTCTTTCAACGCCTCCTCCAGCCGGAA
CTGGGGTCCCATGGGCCGTGTGGGAGCGTCCCCTTACGTAGGGGAACCGG
ACATGGGGAATGGCAAGGCGGGACAGGGGATGGGAGCGGGGAGGGACAAG
GGAAAGAGGGGTCCGGGTCGGCCGAGCAGCAACAAAGCGGTGGTGGCGCG
GCCCTCGGAGGGAAACGGAAGAGCCAATGGCGTTGACGGCTTGTCCGACG
AAATTGGCAAAGTCCTGCAACCGACAGATCTGCTTGATCAAACGGTCTTG
CTCCAGAAACTCCTTCGGCACTACGGGTGGAAGAAACAGTGGCCTGAGGC
GCGGAGTCTGATTCAAGAGTACATTTACGTTCCTCCTGGAGGGAAGCGGC
CAAGCGCCGGTGGAGTGGCGGGCGTGGATTTTGCCATCTCATTCGAGCAC
TTGCGACAACTGGTTGTACGGAAATACTTCAAGGGAGAGGATTTGCTGAC
AGAACATGCGGTGCCCGTTGTAGAGGAGATTGATTTGGATCTGACGAAAG
AGAGACACTTTTCCATGATTCGCGCGGGGCGAGAAAAAAACGGGGAAGAG
GAGGAAGAGGAGGATGATGATGAAGACGAGGATGAGGAAGATGATGATGA
GGAGGAGCAGGAGGAGGAGGAGGAGGCGGACGCCGAGGAGAGGGAGAAGG
CGGAGGGAAAAGTTGGGGGAGTGGAGGGGGAGACATGGTCGGGGCAAAGA
GAAGACTGCATGGAAACTGATCTTCACCCTGCCCTCAGTGAGGATCAAGA
GCGTCGCGAGGAACGGGACAGGGAGGAAAGGACGGAGGAAATGTCTCCTG
AGCCGAGGACGTCCAGGGATGAGAGGACCAAAGGTCATATCAGAGGGGTA
GCGGGGGAAAAGGATGCACACGACCAATCGCAGCCCACAGAATCTGAAGG
AGGTATAACATATTCTTCCCCTCAAAGTCCCCTGTCCGGTGCAAGAGAGG
AAGTCCTCCACAGCCATGCTCGAAGCAATAGCCGCCTCGAAGGCCACTTC
AGTGTCTTGGCGCCCGGCGAATGGTTTCAGCGAGACCATCTCGTTGCGTG
GTTGCGAGATGGCAAGACTTTCAATGCCGCGTTGGACGTCCTAATGAAGA
CGCACGAATGGCAAGTCCTTCCTTCGCAGGAGAACTTTACGTCGACCTCA
GGAAAATTCTACGTGGCACCAGGGGGCCGAACGCCGTGGGAAGGGGGAAC
GCACGGGGTGGACTATCTCATGGATCACGAGGAGCTGATTGAGTACGTCA
CCAACGGCTTTGGGTTGCGGACGAACCAATTTGCCCCCATCACTGCCGCC
TTGAGGCCAGACCGTCTGTATCGCAAAATTATCTCTCCACTGCACGATCG
GAGCCGCCATTCCACACGATCGGGGCGTACCTACACCCCAATTCCCTCCG
CCGAGCCAGCGAGCACGCAGATGGAGGAGTCACCATCGGCTTTGCGGCTT
GACGGGGAGGTAGAGGAGGAGGAAGAAGGCCGGGGACGGGAGAGATGCGG
CGACACGAGTACCGGGCCCTTCATTGAGCATGCCGCGAAGCGCAAATGCT
TAGAGAAGTCCGCGGGGGCCTTGGCTTCGGCCGTCTCGAGCGTGCCCTTC
CTCACGCCTATGGAGGTGGACCGGTACACTTACAGCGTCTTGAAGGCCAA
GCGATGGACCCTCGCCCTGCGACCCCCCGCCCCGTCCTCCTCGAACGATG
CAATGTACGAGCTCATCCCTCCCCAGGAAGAGGGGCTCCCGACGCGGCCG
TTCAACAGCGAGAAGGATGCCTTGCTATGGGCCAGGGACGAAGGAGGCTT
GGTCAGCTCTGAGGAGCTCCAGACGCACGCAGAGGCGTGTCCCTACCAAC
CTATCATCGCCGAGATGGAGGTCGCTCGCAGCCGCCTGGGTCAGGCAGGC
TCGGGGGACTGCCACGTGTCCGCGGTGCGGGAGGTGGAAAGCCGGCGTTT
GCTCGACTTCTACATGGCGTATCTGCTGGAACCCACGGGCGCCTGGCTCC
GCGTGGGAGGGCTCCCGGGGACAGGGAAAACCTTGGCGGTGCAGCATTCA
GAAGCCCTACTGGCCCATGCCTTGGCCTCGCGGGGCGTCAACGCCAGACC
GACCTTTATACGCCTGAACTGCGCCGCCTACTCGGCCCCCAAGAGCTTCC
TCGAAGCCTTAGCAGCTCAATTGCATCTGACGGGCGGGACAGGCTCTTTT
GCTTCCGCCTCTTCGCGCCGCATGAGCCTTGGCGCCGTAAGAGAGCCGCT
GACCGAAGACGCGCTGTGGGCTAAGCTGGAGGAACGCTTACGTTGGGTGA
AAAGGCCGGACATGAACGGGCGAGGGAGCGGGGGCACGCTTTCGGACGTC
CTCAGCAGCCCGCTCATCAAGTCGATGACCTCCTGGTTCCGAGGAGGGGG
GGCTGGGGCGGCGACTAAGGCGGCAGTGGAGACGACACGGAAGGTCTCGG
AGGAGCAGGAGGCAGCAAGCGGAGACCGAAGACTGGACTCGTCGGTGGTG
AAGGCGAACGAGCTGGTGGGTCGCACGGTGGTGTTGGTGCTCGATGAGCT
GGATCAATTCATCGCTACGAACAGGGAGACGATCGGGTGCGTGGCCCGCC
TGATCAGCAACGTGATCATGGTCGCGGGCTCTCGGGCGTTGCTGGTGACG
GTTTCCAACACGATTGACGACCACACGGCCCTGGGCGCCTTGTGGTCGAA
AGCCAAGACAACGGCAGGCCGGTCGCCAGCCTGCTGGAAAGACTATGCGG
GTCACGACGAGGACCGCGCACTCGCAGCAGGCGTCGGTGAGGAGAAGCTC
GAGCCCATCATATTCCGCCCCTTTCAGGACGCGGAACTCGTGCAGATCCT
GAAAGTCTGCGTCGGGGACACCTTTCAAGCCCCGGCTCTGGCCATGATCG
CAAAGCGCGTCACTTCTTCCAGGGGGGATGCGCGCGTGGCCGTCGACACA
TGTCGGCGGGCCTTGGAGCGCCATGTGCGGACGCTGGATGCGAAGGCAAA
GGCGTGGTGCCCCGCCAGCTTGATGGAAGGCGAAAAGGACAACGGAGACA
AGTCTATGGAGGTGCGGGACTCAGAGAGGCAGGTCACGGCCGCCGAAGCG
AATGCCGCCTCCAAAGAAATGGATGTAGACGTGGGGAAAGACATTGGGAA
GCTCCCCCAGCACGCTCGCTTCCTTCTCCTGGTTCTCCTGCACATGACCA
CGACGAGAGGGGGAGGAAAGGGCGGGAATCAGGTGAAGCTAGCTGACCTG
CAGAACGAGTACACGCAACAGGCAAAAGCCATTCTTGGGGCCAGCCAACT
GGGCGCGTCCTCCAACTTTGAGGACAACTTGGAGTGGATTGATGAGAACG
GGTTGGTGGAGAAAGGGAAAGGAGGCAAGGCGAAGGTTGTGAGCCCGAAG
GTGGATTGGGCGACGGTGCTTCCGAAGCTGACAGTACAAGACAAAACGCA
TTTCAAGGCCTTGTTACCCAAGTGA
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protein sequence of rna4515

>rna4515-protein ID=rna4515-protein|Name=rna4515|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MALESLLKVTEDGVDEGTGSGNTALNEGLPPSGLPHPSSMITWEGTKERP
TFQPASLYPPPPEPFTSR
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mRNA from alignment at CM002463.1:812605..813151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4515 ID=rna4515|Name=rna4515|organism=Nannochloropsis gaditana|type=mRNA|length=547bp|location=Sequence derived from alignment at CM002463.1:812605..813151+ (Nannochloropsis gaditana)
ATGGCGTTAGAAAGTCTCTTGAAGGTGACAGAGGATGGGGTGGACGAAGG
TACAGGGTCAGGCAACACCGCCCTAAATGAAGGCCTACCCCCCTCCGGCC
TACCTCATCCATCATCCATGATTACatgggaggggacgaaggaaagaCCC
ACATTTCAGCCGGCAAGTGAGTGATGAAGATACAGAGCCCGCGAGAGGTG
TGAGTACgaacaggggggggaaagtaGGAGAAAataaggaaaaggaggca
tgcGGATAGACAGGGCCTCATCGCCCTGCTGAATGGGTCAAGAAGAGCTG
ACTGGCCCTGTCTCTCACGCCGTGATGCGCTCTAAGAGAGGCATTAACTA
TCACAGCCCCAAAACAATGATTTCTGAACCGCCGATAGCTCCTTTGCCCA
TATGTTCCACCGACACCGCCTTGAAAAATGagttcctttctcccttctat
GCGTTCACGGTCGTACGGCCGTCTGCGCCTATGCTCGCACTCTGCGACAC
CCACAGGCCTCTACCCACCCCCACCAGAGCCCTTCACCTCCCGCTGA
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Coding sequence (CDS) from alignment at CM002463.1:812605..813151+

>rna4515 ID=rna4515|Name=rna4515|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002463.1:812605..813151+ (Nannochloropsis gaditana)
ATGGCGTTAGAAAGTCTCTTGAAGGTGACAGAGGATGGGGTGGACGAAGG
TACAGGGTCAGGCAACACCGCCCTAAATGAAGGCCTACCCCCCTCCGGCC
TACCTCATCCATCATCCATGATTACatgggaggggacgaaggaaagaCCC
ACATTTCAGCCGGCAAGCCTCTACCCACCCCCACCAGAGCCCTTCACCTC
CCGCTGAATGGCGTTAGAAAGTCTCTTGAAGGTGACAGAGGATGGGGTGG
ACGAAGGTACAGGGTCAGGCAACACCGCCCTAAATGAAGGCCTACCCCCC
TCCGGCCTACCTCATCCATCATCCATGATTACatgggaggggacgaagga
aagaCCCACATTTCAGCCGGCAAGCCTCTACCCACCCCCACCAGAGCCCT
TCACCTCCCGCTGA
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Synonyms
Publications