rna4506, rna4506 (mRNA) Nannochloropsis gaditana

Overview
Namerna4506
Unique Namerna4506
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length817
Alignment locationCM002463.1:772963..773499 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100072g4.8029.mrna
Orig protein idgnl|cribi|Naga_100072g4.8029
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:772963..773499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100072g4gene4348Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26196.1cds4495Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4506rna4506-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4506 ID=rna4506|Name=rna4506|organism=Nannochloropsis gaditana|type=mRNA|length=817bp
GTGAAACACTTTCATCGCACGCTTTTTGATGTGCATAAAATGTTAATTTT
CTGCCGAAGCGATCTCGCGGCGGCGACTTTATCACCTCGCATAATATTTA
TTCGCATTCTTCTTACAATGCCAAATCAGGAAGTGATACCACACCTCAAC
ATGTCTCTCGAACCGACTTTTCTTACGAACCGCCCGACTGAGGCCGATAT
GCAAGAACGTGGACTTTTAAGTCCCAATAGCATTGCACCTGCTCTGCAAG
GTAAAGCCAGGACTTTGCAAAAGGCCATGGTCAAAGATGCGATAGCGCTC
CAACTTGCCTCACGGCCGGATGCCGAATCCCTCCATGACAAGGGCGTGCA
TTCCCCTGGAAGCAATATTTCCCCGTCCTTACTTCCTGCGGCTCATAACC
TAGAAAAGTGTCTGAAAAAGGACGCCGTGGCTAAGTCATTGCGAGAGCGT
CCCACTAAGGATGAACTGATTACGGATGGTATCCTGTCACCACCCATGGC
TTAAAAAACGAGCAAGGACCCAGTTACCTTTTCGATGAGAAGTAGAGCTC
CAGAATTTGCCTCTATTAAGAAACTAAGATACTCAAAAGGTCTATGAGCA
ATTCTCTGTCATACAAAGTGCATTTCGTGGGGAAAATCACTTTGTACATC
ATTGTTAATGAAGTCCTCGGACCTTACCATGTACCTTGTACACATCACCA
CACGACTCATCCTTTTCAAAGAAAAAATTGGATATCACTATGTAAGAGCA
TATCTCACAGTATAGTTACTGTTAAAAGTTAGATAGTGTTGCCTTAAAGA
AAAGGCTTTTTAAGGTT
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protein sequence of rna4506

>rna4506-protein ID=rna4506-protein|Name=rna4506|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MLTDSKVLSIFVGEGKCQEVFVAGNVESFSSMEACCRTSFSHHSDPIARR
GMTSVSRLALWAVVNVQHAGFHTTIYDNKEAWNLVLVAIEANQLQELERM
GIVCDLLLQRQTLLCKEKGSIEQGEVKMLLTRLTDVVQRFEIWKGESPAY
WNGRLFLHEMEYSTIFDEAGGLCEMRDV
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mRNA from alignment at CM002463.1:772963..773499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4506 ID=rna4506|Name=rna4506|organism=Nannochloropsis gaditana|type=mRNA|length=537bp|location=Sequence derived from alignment at CM002463.1:772963..773499- (Nannochloropsis gaditana)
ATGCTTACAGACAGCAAGGTTTTGAGTATCTTTGTTGGAGAGGGCAAGTG
TCAGGAGGTTTTCGTGGCCGGGAATGTGGAAAGTTTTAGTTCGATGGAGG
CCTGTTGCAGGACTTCCTTTTCGCATCACTCTGATCCCATTGCCAGGAGA
GGTATGACAAGCGTGTCGCGATTAGCACTGTGGGCAGTGGTGAACGTTCA
GCACGCGGGTTTTCATACCACAATCTACGACAATAAGGAGGCTTGGAACC
TGGTGCTTGTTGCGATAGAAGCAAATCAACTTCAGGAATTAGAGCGAATG
GGTATAGTGTGCGATCTCCTTTTACAAAGACAAACACTACTGTGTAAGGA
GAAGGGGTCCATTGAGCAAGGAGAAGTGAAAATGTTGCTGACAAGATTGA
CCGATGTAGTGCAAAGGTTTGAAATTTGGAAGGGGGAAAGTCCAGCGTAC
TGGAATGGCCGATTATTTTTACATGAAATGGAGTATTCTACAATATTTGA
TGAGGCTGGAGGTTTGTGCGAGATGAGGGATGTCTAG
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Coding sequence (CDS) from alignment at CM002463.1:772963..773499-

>rna4506 ID=rna4506|Name=rna4506|organism=Nannochloropsis gaditana|type=CDS|length=537bp|location=Sequence derived from alignment at CM002463.1:772963..773499- (Nannochloropsis gaditana)
ATGCTTACAGACAGCAAGGTTTTGAGTATCTTTGTTGGAGAGGGCAAGTG
TCAGGAGGTTTTCGTGGCCGGGAATGTGGAAAGTTTTAGTTCGATGGAGG
CCTGTTGCAGGACTTCCTTTTCGCATCACTCTGATCCCATTGCCAGGAGA
GGTATGACAAGCGTGTCGCGATTAGCACTGTGGGCAGTGGTGAACGTTCA
GCACGCGGGTTTTCATACCACAATCTACGACAATAAGGAGGCTTGGAACC
TGGTGCTTGTTGCGATAGAAGCAAATCAACTTCAGGAATTAGAGCGAATG
GGTATAGTGTGCGATCTCCTTTTACAAAGACAAACACTACTGTGTAAGGA
GAAGGGGTCCATTGAGCAAGGAGAAGTGAAAATGTTGCTGACAAGATTGA
CCGATGTAGTGCAAAGGTTTGAAATTTGGAAGGGGGAAAGTCCAGCGTAC
TGGAATGGCCGATTATTTTTACATGAAATGGAGTATTCTACAATATTTGA
TGAGGCTGGAGGTTTGTGCGAGATGAGGGATGTCTAG
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Synonyms
Publications