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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100072g5.8022.mrna |
| Orig protein id | gnl|cribi|Naga_100072g5.8022 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:771565..772381 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4505 ID=rna4505|Name=rna4505|organism=Nannochloropsis gaditana|type=mRNA|length=4579bp
TGGCTACTTATATATATATATGTATCAAACAGGGACATGTTACCACTGAG
ATAAGCGCTTGTCCGAGCCCGTGGCTGCTTACACAGTAAACCATACCCCT
CGCTACTTCCTACAGGTTGGAGGAGCATGGAGGCAAGCACGAGCAGCACG
AGTCTTGCCGAGTTCACTTCATCATATGCTGCTGGTCCAACCGCGAAACG
TGGTCAAAAGAGGGTTTTTGCCTTACCGTCGGAGGAGCAATGGTCGTGGT
TCAGCCTAGGTTCAGTACTGACTGAGGTTCGTGTCGGAGCAACGGACGTT
TTCGGCCATCGCCCTTCTTGTCCCTCAGCTATATCCTTGACCAACCTGGT
CAAGAGGGGTGATACTTGTGAATGGGGTACTGCCGGAGAAAAGACGTGTA
AGAAAGCGGGCGACGTCGAGGATACTGGTCAGGACTCCCAAGAGAGCGAA
CCCGAGGGTTTGCCACGGCGGACATTAAGACTTATGGATGGAAAGCTCAA
AAGAGGATGCGTGCTTGTGCTTCGAAGCTGCAAAGTTTGCGATTTGGTGC
ACGACTTGTCGAGCAAGTCCCTGGTATCTCTCGGGCCGTGGAAAGTAATG
GCGAGGAAAGTTATTAGACCTCGGGCTGAACTACTTGGGCGATCGTCCCC
GCTGACCATGACGCTCAGTTTGAGCGTCACTGTGCGGCTTTGTATAAACC
ATGCTTCTCCCCACCTTTGCGTAAGACAACGCCGCAAATACGTGCCAAAG
CTTCTCGCACTTTGTAATCTTCTCCGCACATCGCAATTTAGGGCCTCGGG
GAGTGCAAGCGTGCCAGCGAGCCAGCAAAACGAGCATAGCAGGCTCAGGC
ATGAGGAAAACGGGCGCGGGCGTTTGGCACAAATTTTCGAAGAAGCTTCA
AGAGCCCCTCAGTCCACGCCGGGGTATGCCGGTACTGGATGTTGGCAGCG
GCAGCAACAACGCGAGCAACAGCCACTGCGGGCCCCCGAGAGGCGCCACC
TGCTCTCCCCAAACGGAAGTTCCTCAAAGCAATCGAGAGCAAGCATTACC
GTGCTAGCTGACGACCTGCTCGGCCTTGTCTTCTCCTTCTTCGACTCTGT
GGCCTTGCACGCCCTGGGCGACACCTGCCGCTATATGAGAGCAGCCACAG
CCAGCATCGTGCCCGGCCTGAAGGCACGCTTGTTTGCCCATCAACTGCGG
GACCTGACGTGGATGTGGCAGAGAGAGAATGCGTCCTGGACGGCCCGGCA
ATACCCTGACCCGGCATGGGAAGCGTTGCTCGTGGAGGAGGACGCGAGTT
GGGAAGGAGACCATGCAGATCAGAGAAAGCCGGAGGACAGGAGGAGGCTC
ATGTATGTAAATATGTTGACGGGGGATCTATTTTTTGACAAAAAGGAGGT
GCCTCTGGTGACCGATGTGCGGGGAGGCTTCCTGTGTGACGAGCCAGGGC
TGGGTAAGACGGTCACGGCCTTGGCCTTGATCCTGAAGACGGCGGGAAGG
TTGCCCGGGCCGGTTGAGGAGGAGGGAGGCATGGAGATGGTGATGGGACA
CAACGCCCGTCGGTGGCACCGGCGACGGACTGCTTACATAGTATGCGATA
CAGGTGGGATGGAACGAGAGGGCCGTCGGTGTCGCTCCACTCACCGCCGT
CGAGACCTGGATCCGCGACTTTTGCGCCCGTCAGGAGCGACCTTGATCAT
CTGCCCGGGCCCTCTGATGGGGCACTGGAGGGAACAGATCGAGAGGCACG
CAGAAGGGTGGGCGTTGGGGGAGGGCCAAGTCTTCTATGACCATGCCACG
GGGATGGGAACCGGGGGCTGGCGGGCCTTGCCCCCACCGGAGCCCTTGGC
TTTGTACAAGGTCGTGGTCGTGACGAGGGAGCGGCTCAGGCAGGAGTGGA
TCAGTGGCGGGCCGACGCACATGATTGATAGCATACCTCCACGGTACGCG
GGTGACCTGGAGGGGACAGAGGCAGAGGAAGGGGATCTTGACAATCGACG
GCTCAGTCCCCTTCTAGGCGTGCGCTGGCTGCGAGTGCTTGTGGACGAAG
GGCACTCCCTAGGCTCAGTGGCCATCACCAACGAGGGCCTCATGTCGAAG
CGCTTGGAAGCAGAACGCCGGTGGGTGATGACAGGAACGCCCCATCGGCA
CGATGCCGCGGATCTGGCCTCCCTGCACGCCCTCCTCTCTTTCCTGCGCC
AAGCACCGTACGGCTCCTCGCACAACGAGTACTGGTACAAGCTCATAAGT
GGACGAGGGGCAGGTGCAGCGACTTCCGAATTGCGTCGGAACCGCTTGGT
CGAACTCTTGCGACGAATTATGGTGCGGCATACAAAAGAAAGCATCCCTG
AGATCCCGGCTCCACACTGGGGAGTGACACGCTTGCGCATGTCGCGTTTG
GAAGCCACCACCTACAACACTCTGGTGTCGTTGGTCCACGCAAACCTGGT
CACGACTGACATGGTAGGGGGCACCCACGCACCAGGGGCGCTCCATCCGG
ACAGCATGTTGAACCCGATCAATCGGGTGTCGGCGAACACCCTGCTCGGT
AACTTGCGCCTGGCTTGTTGTGGAGGTGGTGCTCAGGTCGTGTCTATCGA
GCAGCAATCCATCGTCATGACCCTTCAGTTGGCGCGGCGGTTGTTCTTAG
AGTTTCAGGAGGCTCGCCGCCGAGGAAGGGAGCGGACGGCCGTGGAGGAA
GAGGAGGATGAGGAGGCAGTCTCGGTCGGTGTGGCGCGGGTGGCCGCTTT
TTTGAACCGCCTCAGGGCGTACGTGAACACTCCCTGCGATGCGTGCGGGA
CTTTTTTGATCATCCTCATGGTGACCCCGTGTTTGCATTTGCTTTGTTGC
CAGTGTATGAAAGGGAAAAACAATTTGTGTCCGGCCTGCGGATGCACATT
TTCGGTGGATGCCTTTCAATTGCTGCAGCCAGGCCTGTCAGTGCACTGGC
ACGAGGAAGATTTAGTGGTGCTGCCGGACCGGGTGGATAAACCTCTGGAC
GAGGACGTTGCAAATCACAAGGGTTCTGGTAATATTGTCAATGTTGACAC
GACTTCCTCTACTGTGTCTGTGCAGTCGCCATCATCTGTGCCTTATCACT
TCGATCCAGGACCTTCGCAAATTAATTACCACGTGACGTCCAGGTTCCTT
GACACTGGCAAGAAAGCAGATGAACGAGGCGAAAATCAGGTCGGAGGAAA
GGAGAGTCGGGGACTAATTGGACATGGTACATTGGGTGCTGGTCGCGGGC
CTCTGACTTTAGAGAAGATGGAGCCCCCTCCTAACAGTACGGTTGGCCGG
GTGAGCCACCACACTGATGTCAATGAGGAACACTTCTCTGAAAAGATGGA
CGGCAATGCTGACGACGGCTCATGGCAAGTAGTTAGCAAAGCTTGGCATA
TGATAACTCATTTGCGCGCCTATCTCGAGAACCAGTCAAGCAATCCTTCG
TCGCCTGACCACAGTCTCCCCTTGAAGGCTGTCGTCTTCAGCCAATTTCG
AGTGTATCTAAATGGACTGAAAGTGGCGCTGGAGAACCACGGTTTCCGCG
TGGGGAAATTCTACGATAAAACGAGGCTTGCTGATCTCTCGAGATTCAAG
GCCACTTTTGCGAGTCATGGCGACGAAGGTTTACAGGTTCTTCTGATTGG
AAAAGAGGGAAGCCATGGCCTGGACCTGAGTTTGGCGACACATGTTTTCC
TCATGGACCAAATTTGGGACGAAAATTTGCAGAACCAAGTGGTATCAAGG
GCCTACAGGATGGGAGCGCAGGCATCGGTGCATGTTGAACGGCTTGTCAT
GCAAGACACGGTGGAAGAAGCCATGGAGACCTTGGCGACAGGAAGACTAG
GAGGGCCTCAATTCGAGATAAATACCCAAGGGGATGACTCGGATGAGGAG
CAAGACGAGGATAGCGTGCCAGACAGCGACTCGGAAGCACCCTTGCCTCT
GGAAAGACATTCAGAAAGCGATATACTAGAGTCGTCCTCATCTTCTTCAC
TCTCGGTCATGGGGCATGGGTCTTGGGAACCAGAGAGCTACGGAATACAA
CAAAATCTGGTCGATCGAAATGAATTTACAGATGTCAGCCCAGTCCCCAC
CACGAAGGCAATGTCGAAACGTAAAACTTCAAAGCGAGGCACGGGAAGTG
CGCATTTTCGAAGCGGTCAGAAGAGCGGCCGCTCAAAACTGTCGGGCTGT
ACAAACAGTGGTACTGGGGCACCGGATGCGAAGAAGATGAATATTTTATT
GCGATCTCTCCGTGTGGTGGAGGTCAACCCTTCTCCATCAGCCGTAAAGT
TGAGCCGTGCTGCAATTATCACTCCTGTTGAAACTACCTCCACCCCTGAG
ACCGGTAGCGGTCGGCAAAATAGTGAAACTGTCCATGATGCACGCGGTGT
CTTAAGTCTTGCCGATTTTAATTTTGCACACGGGGCAGACAAAATTCGCG
AAATAAATTCGGGTGATACATGTGCCAAAGAGCCTGTTCGACGCGTGCGC
TTCGAATAGACTTACGAAAAAATAACCATGCGATACTGTTTTGAAGCAAA
AGTTTTTACAAAGATAAAATATGTAAAAA back to topprotein sequence of rna4505 >rna4505-protein ID=rna4505-protein|Name=rna4505|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MLIFCRSDLAAATLSPRIIFIRILLTMPNQEVIPHLNMSLEPTFLTNRPT
EADMQERGLLSPNSIAPALQGKARTLQKAMVKDAIALQLASRPDAESLHD
KGVHSPGSNISPSLLPAAHNLEKCLKKDAVAKSLRERPTKDELITDGILS
PPMA back to topmRNA from alignment at CM002463.1:771565..772381+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4505 ID=rna4505|Name=rna4505|organism=Nannochloropsis gaditana|type=mRNA|length=817bp|location=Sequence derived from alignment at CM002463.1:771565..772381+ (Nannochloropsis gaditana)
GTGAAACACTTTCATCGCACGCTTTTTGATGTGCATAAAATGTTAATTTT
CTGCCGAAGCGATCTCGCGGCGGCGACTTTATCACCTCGCATAATATTTA
TTCGCATTCTTCTTACAATGCCAAATCAGGAAGTGATACCACACCTCAAC
ATGTCTCTCGAACCGACTTTTCTTACGAACCGCCCGACTGAGGCCGATAT
GCAAGAACGTGGACTTTTAAGTCCCAATAGCATTGCACCTGCTCTGCAAG
GTAAAGCCAGGACTTTGCAAAAGGCCATGGTCAAAGATGCGATAGCGCTC
CAACTTGCCTCACGGCCGGATGCCGAATCCCTCCATGACAAGGGCGTGCA
TTCCCCTGGAAGCAATATTTCCCCGTCCTTACTTCCTGCGGCTCATAACC
TAGAAAAGTGTCTGAAAAAGGACGCCGTGGCTAAGTCATTGCGAGAGCGT
CCCACTAAGGATGAACTGATTACGGATGGTATCCTGTCACCACCCATGGC
TTAAAAAACGAGCAAGGACCCAGTTACCTTTTCGATGAGAAGTAGAGCTC
CAGAATTTGCCTCTATTAAGAAACTAAGATACTCAAAAGGTCTATGAGCA
ATTCTCTGTCATACAAAGTGCATTTCGTGGGGAAAATCACTTTGTACATC
ATTGTTAATGAAGTCCTCGGACCTTACCATGTACCTTGTACACATCACCA
CACGACTCATCCTTTTCAAAGAAAAAATTGGATATCACTATGTAAGAGCA
TATCTCACAGTATAGTTACTGTTAAAAGTTAGATAGTGTTGCCTTAAAGA
AAAGGCTTTTTAAGGTT back to topCoding sequence (CDS) from alignment at CM002463.1:771565..772381+ >rna4505 ID=rna4505|Name=rna4505|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at CM002463.1:771565..772381+ (Nannochloropsis gaditana)
ATGTTAATTTTCTGCCGAAGCGATCTCGCGGCGGCGACTTTATCACCTCG
CATAATATTTATTCGCATTCTTCTTACAATGCCAAATCAGGAAGTGATAC
CACACCTCAACATGTCTCTCGAACCGACTTTTCTTACGAACCGCCCGACT
GAGGCCGATATGCAAGAACGTGGACTTTTAAGTCCCAATAGCATTGCACC
TGCTCTGCAAGGTAAAGCCAGGACTTTGCAAAAGGCCATGGTCAAAGATG
CGATAGCGCTCCAACTTGCCTCACGGCCGGATGCCGAATCCCTCCATGAC
AAGGGCGTGCATTCCCCTGGAAGCAATATTTCCCCGTCCTTACTTCCTGC
GGCTCATAACCTAGAAAAGTGTCTGAAAAAGGACGCCGTGGCTAAGTCAT
TGCGAGAGCGTCCCACTAAGGATGAACTGATTACGGATGGTATCCTGTCA
CCACCCATGGCTTAA back to top
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