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Properties
| Property Name | Value |
|---|
| Product | atp-dependent rna helicase ddx1 |
| Orig transcript id | gnl|cribi|Naga_100072g7.8025.mrna |
| Orig protein id | gnl|cribi|Naga_100072g7.8025 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:763890..766513 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4503 ID=rna4503|Name=rna4503|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
ATGAAAAAGATGGCAATTGGTAGAAACTTATACAAAGATAATGATTCGGA
TGTCGGAATTGCAAGCGACGACATGGAGCCGTGTAAGTCAGGACTCGATA
ATCAGCATCGCAAACTCTGTCACGCCGGGGAACTCGAGGACAGCGACGGG
GATGAGGAAGCCTTGATAATGGATGATGAGCACGATGAAGAAATGATCGA
AGCGATGCGTTGCACGGCCCTTCAACGAAAACAGGCCACCCCGCAGGTCA
GTCGATGGACGTCGGGGATCGGGACCATCGCGAAAGACATGCAACGACAG
CACCAACATCAGCAGCTCCAAGGCAATCTCGAGGTTTCCGCGACATCAGT
TGCTGCAACTACGGCTAAAATCTTATTGGGGCCTCCTACCTTGATGAAAC
AACTTGAGGCTGTCTTTACAGAGATCGAGCACATCTCCTCAACTCGCTCC
TCCCACACCGTTTCGCCCAAAGGCAAAACTGGTCTGGCTAGCCCCCTTCG
ACAGTCCTCCTGGTTCGGTACGCGAAAAGGAGAGAAAAAACGACTCATCG
AGAAGTATAAGGCTCAGCTCGCGGCTTTAGAGGGAGAACGGAAAGAGGCT
TCCGAGGAAATGCGCAAGGCCATCCAGACTGGGGGCGTTGCACTGGGAAT
GCTGAAGGAGGAGTGGACGCGTACGGACATTGACACTCTCCGTAAAGCCC
GAGAGCTGGAGAAAGTGCAAGAATTGTTGGGCCGACACGAAGCTGAGAGC
ACTCAACTTCGCATCACTGTCAGTGGCCTCCGAAGGCAGGTGGAGGAGCT
CGTGAATAGAGCCCAGTCTGTCCCCCGGGGTTCGCAAGACGATGAGCAGA
AGGAGGAAGAGTTGCTGTCTGATTCGCCCTTGATGGTGTCGGCAACAAGC
TCTCCTATTCAAGAGTGTAGCGTGAGAGAGACGAGCGCCAAGACCAGCAG
TCCTCCTGCAAGCTCCGAAATGGGCAAGGAGCTTGTGGTGAACGACGCAC
GTCTCGCGCAGCTAGAGATGGAGCTGGACTTAGCATACGGGAAGCTGGAG
GCATTGAGCTTGCAGCAATGTTACTCGCAAGACAAAAGCACTGGAGTTTT
ACAGCAGTTACGAGGAGAACTGAAGGAGACAAAATTGGCGTTGGCGGCAC
GCGTGAAGAAGCACACCGAAATGAAAGAACGTTGCCGACAGTTGGAGGGG
GAACTGGGAGCCTCCGTGGGACAAATCGAGGCGGTGAAACATCAAATGGA
GCTCCGTGTCGCAAAAATGGAGGATCGGCTCAAGGAATCTATGCGGGAAG
CCTTGGAAAATGAGCGAACGGCAAAAAATGCCTTATTCAAGCGACAGCAG
GTGGAGGAGGAGATGGAGCGGTTGCGGGAACAACACGATGTCTTGGTGGG
CCAGTTCGAAGCGATCCGATCCCAAGTAGAGCTGGAAAAATTGGAAGCGC
AGGGAGTCGTGACCAAATACGAGAAGGAATTGGAGGAGGTGTACGGGAAA
CTGAATGCCAAGGACGAGTACGCTGGGTTGCTGTGCGGGGTGAGACAGGA
TATGGACTCGGAGATGACTGACCTGTGGAGCCAAGTAGATGCGGCGGAAG
AGAAACGCGCTAAAGTGGAAGAGGCATTTGTTGCGCTAGGCAATAAATTT
AGAGCGGCATCGGCAAGGCGTCTATTCAATTTTATGGTTGCGCAACAAAG
ATGCAGGCTACGAGAGTCACTGATAATTCTGAAAAAAAATTCCAAAGCGC
CTCTTTTGCAAGCGGATGTTCCATGA back to topprotein sequence of rna4503 >rna4503-protein ID=rna4503-protein|Name=rna4503|organism=Nannochloropsis gaditana|type=polypeptide|length=772bp
MAGGFESLGLGEELIQAIEGDLNWLLPTDVQDEAIPLILGGGDVMAAAET
GSGKTAAFALPVLQLVMETKRREAGGKSGTTCEGEAKNERDWRLSGVDRD
GMLGIEGVDGSQAFVTTSRWVGGRSTLGVCKGKAYFEATLLEEGNQGVGR
VGWSTARANYNLGTDKYGFGYGGTGKKSHEGRFETYGEIFKKGDVIGSFL
DLEKGIVGFSKNGAYLGDAFVMEESLKGLAWFPAVALKEARIQMNFTGPF
RHPVPTERGFLGVAELPLDGVLKPDFSKHSASGAGSGGGKGGGNSLGSPF
AIIIEPARDLAEQVYSCICDYSRHVEGVDIALVMGGNDQRETKAGLRSGC
DIVVGTIGKLMDFMKRGLLNMDRARFLILDEADRFLEAGERADVMTIYQR
LPKGGVGDQRLQVCFFSATLHSPEITELAKAICDRPTWVDLKGKDSVPEA
VHHVVVEMDPENSALQTLLHPTSSPAAQHVVTDNVHAASSLSQDPEEVER
RSDMIKRLKPLVLLKIIEAYDMEQCIIFCRTNLDCNNLEQFLNFAGGGQM
FKGKVEKGKENIYSCCVLAGMRSMDERRRNLQAFKEGDVRFLICTDVAAR
GIDIQNLPFVINYTLPDAVENYIHRVGRVGRADCLGLAISLVAASGYQEK
VWYHTCTNKGKGCSNREVTDKGGCTVWFDEYDMLRQVEARLHTETIPRLV
PPNFALPPAIKSSLGGAKYGEAVSKQVVNETVAKHVALLRPAVQELIDLE
QRAQTTWLSLRQRYGGGRAGLG back to topmRNA from alignment at CM002463.1:763890..766513- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4503 ID=rna4503|Name=rna4503|organism=Nannochloropsis gaditana|type=mRNA|length=2624bp|location=Sequence derived from alignment at CM002463.1:763890..766513- (Nannochloropsis gaditana)
TCCCCTGTCTCTATACCAAGCATCTGCCCTCGTGATTGCCAAATAGTCCA
TCCCATGAGTCTTATGGCAACTGAGGCGGCAATTAATTGTATCTAACAAC
ACTTTGTTGGTTCGCAGACAAAGCCAAGTAGATGGCGGGTGGTTTCGAGT
CCTTGGGCCTCGGGGAGGAGCTCATTCAGGTACGCAACAAGCTAGCCCTC
ATAAAACCTGGATTTTTAAAAGCATTCGGGGCCACTCACAAGAATGTCTT
GATTCTTCGCTCATTTCATCGTTTCCATTACTCCATTTGACCCCTCTTCT
GGAGGCCATCGAGGGCGACTTGAATTGGTTGTTGCCAACGGATGTGCAAG
ACGAGGCAATCCCCTTGATTTTGGGGGGGGGGGACGTAATGGCAGCGGCG
GAGACGGGGAGCGGTAAAACTGCTGCTTTCGCCCTTCCGGTACTGCAGCT
GGTGATGGAGACAAAACGCCGCGAGGCCGGGGGGAAGAGTGGCACAACGT
GTGAGGGGGAGGCCAAGAACGAAAGAGACTGGCGGCTCAGCGGCGTCGAC
AGGGATGGAATGCTCGGCATCGAAGGGGTGGACGGCAGCCAGGCCTTCGT
CACCACCTCCCGCTGGGTAGGAGGACGGTCGACACTGGGTGTGTGCAAAG
GGAAGGCTTATTTTGAAGCCACGCTACTGGAAGAGGGAAATCAGGGTGTT
GGCAGGGTGGGCTGGTCGACAGCACGTGCAAATTACAATTTAGGGACAGA
CAAGTACGGTTTCGGTTACGGTGGAACAGGTAAAAAAAGCCACGAAGGAC
GCTTCGAAACTTACGGGGAAATCTTTAAGAAAGGTGACGTGATCGGCAGC
TTTTTGGACCTAGAGAAGGGCATAGTAGGATTCAGCAAGAATGGAGCCTA
CCTTGGGGATGCCTTTGTGATGGAAGAGAGCTTGAAAGGACTCGCATGGT
TCCCAGCTGTCGCTCTGAAAGAAGCCCGGATACAAATGAATTTCACTGGG
CCTTTCCGGCACCCTGTGCCCACGGAACGGGGCTTTCTTGGCGTCGCGGA
GCTCCCCCTTGACGGCGTGCTCAAGCCCGACTTCAGCAAACACAGCGCCA
GTGGGGCGGGGAGTGGGGGAGGAAAAGGGGGCGGAAACAGCCTTGGCAGC
CCTTTTGCCATCATCATTGAGCCGGCGCGGGATCTGGCCGAGCAGGTCTA
TTCCTGCATCTGCGATTACTCCCGGCACGTGGAGGGAGTGGACATAGCCC
TGGTGATGGGAGGGAACGACCAGCGTGAGACCAAGGCAGGTCTGCGGAGC
GGCTGCGATATAGTGGTGGGGACGATCGGAAAATTAATGGACTTTATGAA
GCGCGGTCTTTTGAACATGGATCGGGCCCGTTTTTTGATCTTGGACGAGG
CAGATCGCTTCCTGGAGGCTGGGGAGAGAGCCGACGTTATGACTATCTAC
CAGCGCCTTCCCAAAGGCGGTGTCGGGGACCAGCGCCTGCAGGTCTGTTT
TTTCTCTGCTACCTTGCATTCACCGGAGATCACCGAGCTGGCAAAGGCGA
TTTGCGACAGACCTACATGGGTGGACCTGAAAGGGAAGGACAGTGTGCCC
GAGGCCGTGCACCACGTGGTGGTGGAAATGGACCCAGAGAACTCGGCTCT
CCAAACTCTTCTGCACCCGACCTCCTCCCCGGCCGCACAGCATGTCGTAA
CTGATAATGTACACGCTGCCTCGAGCCTCTCTCAGGATCCGGAAGAAGTT
GAGCGGCGCTCGGATATGATCAAACGCCTGAAGCCCCTTGTCCTCCTGAA
AATCATTGAAGCTTACGACATGGAGCAATGCATTATATTTTGCAGAACGA
ATCTCGACTGCAACAATCTCGAGCAGTTCTTGAACTTCGCAGGAGGGGGT
CAGATGTTTAAAGGTAAAGTGGAAAAGGGAAAGGAAAACATCTACTCGTG
CTGTGTCTTGGCAGGCATGCGGTCCATGGACGAGCGGCGAAGGAATCTGC
AAGCATTTAAAGAAGGGGATGTTCGTTTTCTAATCTGCACCGATGTAGCC
GCGCGTGGGATAGATATCCAAAATTTACCTTTCGTAATCAACTACACGCT
GCCCGATGCCGTGGAGAACTACATTCACCGGGTGGGCCGCGTGGGGAGGG
CAGACTGCTTGGGTTTGGCAATTTCGCTAGTGGCGGCTTCAGGTTATCAA
GAGAAGGTTTGGTACCATACTTGTACCAACAAAGGGAAGGGATGCTCCAA
CCGGGAGGTTACAGATAAAGGAGGTTGCACCGTCTGGTTCGACGAGTACG
ACATGCTGAGGCAGGTGGAAGCACGCTTGCACACGGAGACCATCCCCCGT
CTAGTGCCTCCGAACTTTGCCTTGCCTCCAGCTATCAAGTCCTCCTTGGG
TGGAGCGAAATACGGGGAGGCAGTGAGCAAGCAGGTGGTGAATGAAACAG
TCGCCAAGCACGTAGCGCTCCTGCGACCAGCGGTGCAAGAATTGATTGAT
CTTGAGCAGAGGGCACAGACGACTTGGTTGAGTTTGAGACAGCGATACGG
AGGGGGTCGCGCGGGCTTAGGGTGATGGGAATCTTAAGAGGGCGGGAAAT
TGACAAATAATGGAACAGGCGAGA back to topCoding sequence (CDS) from alignment at CM002463.1:763890..766513- >rna4503 ID=rna4503|Name=rna4503|organism=Nannochloropsis gaditana|type=CDS|length=4638bp|location=Sequence derived from alignment at CM002463.1:763890..766513- (Nannochloropsis gaditana)
GCCATCGAGGGCGACTTGAATTGGTTGTTGCCAACGGATGTGCAAGACGA
GGCAATCCCCTTGATTTTGGGGGGGGGGGACGTAATGGCAGCGGCGGAGA
CGGGGAGCGGTAAAACTGCTGCTTTCGCCCTTCCGGTACTGCAGCTGGTG
ATGGAGACAAAACGCCGCGAGGCCGGGGGGAAGAGTGGCACAACGTGTGA
GGGGGAGGCCAAGAACGAAAGAGACTGGCGGCTCAGCGGCGTCGACAGGG
ATGGAATGCTCGGCATCGAAGGGGTGGACGGCAGCCAGGCCTTCGTCACC
ACCTCCCGCTGGGTAGGAGGACGGTCGACACTGGGTGTGTGCAAAGGGAA
GGCTTATTTTGAAGCCACGCTACTGGAAGAGGGAAATCAGGGTGTTGGCA
GGGTGGGCTGGTCGACAGCACGTGCAAATTACAATTTAGGGACAGACAAG
TACGGTTTCGGTTACGGTGGAACAGGTAAAAAAAGCCACGAAGGACGCTT
CGAAACTTACGGGGAAATCTTTAAGAAAGGTGACGTGATCGGCAGCTTTT
TGGACCTAGAGAAGGGCATAGTAGGATTCAGCAAGAATGGAGCCTACCTT
GGGGATGCCTTTGTGATGGAAGAGAGCTTGAAAGGACTCGCATGGTTCCC
AGCTGTCGCTCTGAAAGAAGCCCGGATACAAATGAATTTCACTGGGCCTT
TCCGGCACCCTGTGCCCACGGAACGGGGCTTTCTTGGCGTCGCGGAGCTC
CCCCTTGACGGCGTGCTCAAGCCCGACTTCAGCAAACACAGCGCCAGTGG
GGCGGGGAGTGGGGGAGGAAAAGGGGGCGGAAACAGCCTTGGCAGCCCTT
TTGCCATCATCATTGAGCCGGCGCGGGATCTGGCCGAGCAGGTCTATTCC
TGCATCTGCGATTACTCCCGGCACGTGGAGGGAGTGGACATAGCCCTGGT
GATGGGAGGGAACGACCAGCGTGAGACCAAGGCAGGTCTGCGGAGCGGCT
GCGATATAGTGGTGGGGACGATCGGAAAATTAATGGACTTTATGAAGCGC
GGTCTTTTGAACATGGATCGGGCCCGTTTTTTGATCTTGGACGAGGCAGA
TCGCTTCCTGGAGGCTGGGGAGAGAGCCGACGTTATGACTATCTACCAGC
GCCTTCCCAAAGGCGGTGTCGGGGACCAGCGCCTGCAGGTCTGTTTTTTC
TCTGCTACCTTGCATTCACCGGAGATCACCGAGCTGGCAAAGGCGATTTG
CGACAGACCTACATGGGTGGACCTGAAAGGGAAGGACAGTGTGCCCGAGG
CCGTGCACCACGTGGTGGTGGAAATGGACCCAGAGAACTCGGCTCTCCAA
ACTCTTCTGCACCCGACCTCCTCCCCGGCCGCACAGCATGTCGTAACTGA
TAATGTACACGCTGCCTCGAGCCTCTCTCAGGATCCGGAAGAAGTTGAGC
GGCGCTCGGATATGATCAAACGCCTGAAGCCCCTTGTCCTCCTGAAAATC
ATTGAAGCTTACGACATGGAGCAATGCATTATATTTTGCAGAACGAATCT
CGACTGCAACAATCTCGAGCAGTTCTTGAACTTCGCAGGAGGGGGTCAGA
TGTTTAAAGGTAAAGTGGAAAAGGGAAAGGAAAACATCTACTCGTGCTGT
GTCTTGGCAGGCATGCGGTCCATGGACGAGCGGCGAAGGAATCTGCAAGC
ATTTAAAGAAGGGGATGTTCGTTTTCTAATCTGCACCGATGTAGCCGCGC
GTGGGATAGATATCCAAAATTTACCTTTCGTAATCAACTACACGCTGCCC
GATGCCGTGGAGAACTACATTCACCGGGTGGGCCGCGTGGGGAGGGCAGA
CTGCTTGGGTTTGGCAATTTCGCTAGTGGCGGCTTCAGGTTATCAAGAGA
AGGTTTGGTACCATACTTGTACCAACAAAGGGAAGGGATGCTCCAACCGG
GAGGTTACAGATAAAGGAGGTTGCACCGTCTGGTTCGACGAGTACGACAT
GCTGAGGCAGGTGGAAGCACGCTTGCACACGGAGACCATCCCCCGTCTAG
TGCCTCCGAACTTTGCCTTGCCTCCAGCTATCAAGTCCTCCTTGGGTGGA
GCGAAATACGGGGAGGCAGTGAGCAAGCAGGTGGTGAATGAAACAGTCGC
CAAGCACGTAGCGCTCCTGCGACCAGCGGTGCAAGAATTGATTGATCTTG
AGCAGAGGGCACAGACGACTTGGTTGAGTTTGAGACAGCGATACGGAGGG
GGTCGCGCGGGCTTAGGGTGAATGGCGGGTGGTTTCGAGTCCTTGGGCCT
CGGGGAGGAGCTCATTCAGGCCATCGAGGGCGACTTGAATTGGTTGTTGC
CAACGGATGTGCAAGACGAGGCAATCCCCTTGATTTTGGGGGGGGGGGAC
GTAATGGCAGCGGCGGAGACGGGGAGCGGTAAAACTGCTGCTTTCGCCCT
TCCGGTACTGCAGCTGGTGATGGAGACAAAACGCCGCGAGGCCGGGGGGA
AGAGTGGCACAACGTGTGAGGGGGAGGCCAAGAACGAAAGAGACTGGCGG
CTCAGCGGCGTCGACAGGGATGGAATGCTCGGCATCGAAGGGGTGGACGG
CAGCCAGGCCTTCGTCACCACCTCCCGCTGGGTAGGAGGACGGTCGACAC
TGGGTGTGTGCAAAGGGAAGGCTTATTTTGAAGCCACGCTACTGGAAGAG
GGAAATCAGGGTGTTGGCAGGGTGGGCTGGTCGACAGCACGTGCAAATTA
CAATTTAGGGACAGACAAGTACGGTTTCGGTTACGGTGGAACAGGTAAAA
AAAGCCACGAAGGACGCTTCGAAACTTACGGGGAAATCTTTAAGAAAGGT
GACGTGATCGGCAGCTTTTTGGACCTAGAGAAGGGCATAGTAGGATTCAG
CAAGAATGGAGCCTACCTTGGGGATGCCTTTGTGATGGAAGAGAGCTTGA
AAGGACTCGCATGGTTCCCAGCTGTCGCTCTGAAAGAAGCCCGGATACAA
ATGAATTTCACTGGGCCTTTCCGGCACCCTGTGCCCACGGAACGGGGCTT
TCTTGGCGTCGCGGAGCTCCCCCTTGACGGCGTGCTCAAGCCCGACTTCA
GCAAACACAGCGCCAGTGGGGCGGGGAGTGGGGGAGGAAAAGGGGGCGGA
AACAGCCTTGGCAGCCCTTTTGCCATCATCATTGAGCCGGCGCGGGATCT
GGCCGAGCAGGTCTATTCCTGCATCTGCGATTACTCCCGGCACGTGGAGG
GAGTGGACATAGCCCTGGTGATGGGAGGGAACGACCAGCGTGAGACCAAG
GCAGGTCTGCGGAGCGGCTGCGATATAGTGGTGGGGACGATCGGAAAATT
AATGGACTTTATGAAGCGCGGTCTTTTGAACATGGATCGGGCCCGTTTTT
TGATCTTGGACGAGGCAGATCGCTTCCTGGAGGCTGGGGAGAGAGCCGAC
GTTATGACTATCTACCAGCGCCTTCCCAAAGGCGGTGTCGGGGACCAGCG
CCTGCAGGTCTGTTTTTTCTCTGCTACCTTGCATTCACCGGAGATCACCG
AGCTGGCAAAGGCGATTTGCGACAGACCTACATGGGTGGACCTGAAAGGG
AAGGACAGTGTGCCCGAGGCCGTGCACCACGTGGTGGTGGAAATGGACCC
AGAGAACTCGGCTCTCCAAACTCTTCTGCACCCGACCTCCTCCCCGGCCG
CACAGCATGTCGTAACTGATAATGTACACGCTGCCTCGAGCCTCTCTCAG
GATCCGGAAGAAGTTGAGCGGCGCTCGGATATGATCAAACGCCTGAAGCC
CCTTGTCCTCCTGAAAATCATTGAAGCTTACGACATGGAGCAATGCATTA
TATTTTGCAGAACGAATCTCGACTGCAACAATCTCGAGCAGTTCTTGAAC
TTCGCAGGAGGGGGTCAGATGTTTAAAGGTAAAGTGGAAAAGGGAAAGGA
AAACATCTACTCGTGCTGTGTCTTGGCAGGCATGCGGTCCATGGACGAGC
GGCGAAGGAATCTGCAAGCATTTAAAGAAGGGGATGTTCGTTTTCTAATC
TGCACCGATGTAGCCGCGCGTGGGATAGATATCCAAAATTTACCTTTCGT
AATCAACTACACGCTGCCCGATGCCGTGGAGAACTACATTCACCGGGTGG
GCCGCGTGGGGAGGGCAGACTGCTTGGGTTTGGCAATTTCGCTAGTGGCG
GCTTCAGGTTATCAAGAGAAGGTTTGGTACCATACTTGTACCAACAAAGG
GAAGGGATGCTCCAACCGGGAGGTTACAGATAAAGGAGGTTGCACCGTCT
GGTTCGACGAGTACGACATGCTGAGGCAGGTGGAAGCACGCTTGCACACG
GAGACCATCCCCCGTCTAGTGCCTCCGAACTTTGCCTTGCCTCCAGCTAT
CAAGTCCTCCTTGGGTGGAGCGAAATACGGGGAGGCAGTGAGCAAGCAGG
TGGTGAATGAAACAGTCGCCAAGCACGTAGCGCTCCTGCGACCAGCGGTG
CAAGAATTGATTGATCTTGAGCAGAGGGCACAGACGACTTGGTTGAGTTT
GAGACAGCGATACGGAGGGGGTCGCGCGGGCTTAGGGTGAATGGCGGGTG
GTTTCGAGTCCTTGGGCCTCGGGGAGGAGCTCATTCAG back to top
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