rna4502, rna4502 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4502
Unique Name	rna4502
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1152
Alignment location	CM002463.1:761826..763601 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100072g8.8027.mrna
Orig protein id	gnl\|cribi\|Naga_100072g8.8027
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:761826..763601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100072g8	gene4344	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4502	rna4502-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26194.1	cds4491	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:761826..763601+
coding sequence from alignment at CM002463.1:761826..763601+

mRNA sequence

>rna4502 ID=rna4502|Name=rna4502|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp
ATGTCGCCCCTCTCCCCGTGGCTCAAATGGGGCGTCGTGCTGCTGGCTTG
GCACGTCGCGACCTCCCCCGTCACCGCCTTGATCCACCTTCGACATGCGT
CAGTAAGGACTGAAAAGATGAGGGCCCCTTTACCTGCAAAACCATTAATG
GTTTCAACACTAGACCAAGAAACCCTACCCCCACCTAAGTCGACACGTCC
GCAACTGCCTACGACTTTCTGGACGTGGAAACGGGGCCCGGGAGAGGATT
ATCGAATTCGGTATCATCAAAGCGGAGACAAAGGACCTGCAGTTATTTTA
ATTCATGGCTTCGGAGGAAATGCAGACCACTGGGCCCAGAACGTGCCTGA
CCTGAACCCCCACTACCGAGTTTTCGCCCTTGACTTGCTAGGGTATGGAT
ACAGTGACAAGCCCTCCCCCAAGGGCCGGGCCCCGACGGAGCTCTTCAAT
TTCGAAACATGGGCAGCCATGACGGAGGCCTTCGTTAAGGACATCGTCCA
CGAGCAGGCCCTGGCAGGAGTGAGCCCTTCTGAGGAAGGGGTATACGTGG
TCTGCAACAGCGTGGGCGGCCTCGTTGGGCTACAGCTCGCTGTGGACCGA
CCTGATTTGGTCAAGGGCGTCATGCTCTTGAATATCTCTCTGCGGATGCT
GCACTTGAAGAAACAACCTTGGTTTTTAAAGCCCTTTGTCAAAGCACTCC
AAACAACTCTCAGAGAAACGCGGCTGGGCCAGCTTTTCTTTGCCCAAGTG
GCAACGCCCCAAGGGGTCAAGAATGCCTTGTCTCAGGCTTACCACGATAA
AACACGAGTCACAGATGAGCTAGTGGAAGCTATTTTGAAGCCGGGGCTAG
AGCCGGGGGCAGTTGACGTATTTTTGGACTTCATTTCGTACTCCGGGGGC
CCTTTGCCTGAGGAGCTGCTGCCGCGCGTAGACGTGCCCGTGTACATTGG
ATGGGGGGAAGAAGATCCATGGGAGCCGATCGCCCTGGGGCGGGCTTACG
GCGAGTTCCCCTGCGTGCGTGAGTTTAGACCTTTCAAAGGCCTCGGCCAT
TGCCCCATGGATGAAGATCCGGCTGTGGTTGACCCTTTTATTCGTGAGAT
GGTTGATACGATAGAGGGGGAGAGGAAGGGCGGGGCTGCTTTACCCGCGT
AA

protein sequence of rna4502

>rna4502-protein ID=rna4502-protein|Name=rna4502|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MKKMAIGRNLYKDNDSDVGIASDDMEPCKSGLDNQHRKLCHAGELEDSDG
DEEALIMDDEHDEEMIEAMRCTALQRKQATPQVSRWTSGIGTIAKDMQRQ
HQHQQLQGNLEVSATSVAATTAKILLGPPTLMKQLEAVFTEIEHISSTRS
SHTVSPKGKTGLASPLRQSSWFGTRKGEKKRLIEKYKAQLAALEGERKEA
SEEMRKAIQTGGVALGMLKEEWTRTDIDTLRKARELEKVQELLGRHEAES
TQLRITVSGLRRQVEELVNRAQSVPRGSQDDEQKEEELLSDSPLMVSATS
SPIQECSVRETSAKTSSPPASSEMGKELVVNDARLAQLEMELDLAYGKLE
ALSLQQCYSQDKSTGVLQQLRGELKETKLALAARVKKHTEMKERCRQLEG
ELGASVGQIEAVKHQMELRVAKMEDRLKESMREALENERTAKNALFKRQQ
VEEEMERLREQHDVLVGQFEAIRSQVELEKLEAQGVVTKYEKELEEVYGK
LNAKDEYAGLLCGVRQDMDSEMTDLWSQVDAAEEKRAKVEEAFVALGNKF
RAASARRLFNFMVAQQRCRLRESLIILKKNSKAPLLQADVP

mRNA from alignment at CM002463.1:761826..763601+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4502 ID=rna4502|Name=rna4502|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp|location=Sequence derived from alignment at CM002463.1:761826..763601+ (Nannochloropsis gaditana)
ATGAAAAAGATGGCAATTGGTAGAAACTTATACAAAGATAATGATTCGGA
TGTCGGAATTGCAAGCGACGACATGGAGCCGTGTAAGTCAGGACTCGATA
ATCAGCATCGCAAACTCTGTCACGCCGGGGAACTCGAGGACAGCGACGGG
GATGAGGAAGCCTTGATAATGGATGATGAGCACGATGAAGAAATGATCGA
AGCGATGCGTTGCACGGCCCTTCAACGAAAACAGGCCACCCCGCAGGTCA
GTCGATGGACGTCGGGGATCGGGACCATCGCGAAAGACATGCAACGACAG
CACCAACATCAGCAGCTCCAAGGCAATCTCGAGGTTTCCGCGACATCAGT
TGCTGCAACTACGGCTAAAATCTTATTGGGGCCTCCTACCTTGATGAAAC
AACTTGAGGCTGTCTTTACAGAGATCGAGCACATCTCCTCAACTCGCTCC
TCCCACACCGTTTCGCCCAAAGGCAAAACTGGTCTGGCTAGCCCCCTTCG
ACAGTCCTCCTGGTTCGGTACGCgaaaaggagagaaaaaACGACTCATCG
AGAAGTATAAGGCTCAGCTCGCGGCTTTAGAGGGAGAACGGAAAGAGGCT
TCCGAGGAAATGCGCAAGGCCATCCAGACTGGGGGCGTTGCACTGGGAAt
gctgaaggaggagtggaCGCGTACGGACATTGACACTCTCCGTAAAGCCC
GAGAGCTGGAGAAAGTGCAAGAATTGTTGGGCCGACACGAAGCTGAGAGC
ACTCAACTTCGCATCACTGTCAGTGGCCTCCGaaggcaggtggaggagct
cgtgAATAGAGCCCAGTCTGTCCCCCGGGGTTCGCAAGACGAtgagcaga
aggaggaagagttgCTGTCTGATTCGCCCTTGATGGTGTCGGCAACAAGC
TCTCCTATTCAAGAGTGTAGCGTGAGAGAGACGAGCGCCAAGACCAGCAG
TCCTCCTGCAAGCTCCGAAATGGGCAAGGAGCTTGTGGTGAACGACGCAC
GTCTCGCGCAGCTAGAGATGGAGCTGGACTTAGCATACGGGAAGCTGGAG
GCATTGAGCTTGCAGCAATGTTACTCGCAAGACAAAAGCACTGGAGTTTT
ACAGCAGTTACGAGGAGAACTGAAGGAGACAAAATTGGCGTTGGCGGCAC
GCGTGAAGAAGCACACCGAAATGAAAGAACGTTGCCGACAGTTGGAGGGG
GAACTGGGAGCCTCCGTGGGACAAATCGAGGCGGTGAAACATCAAATGGA
GCTCCGTGTCGCAAAAATGGAGGATCGGCTCAAGGAATCTATGCGGGAAG
CCTTGGAAAATGAGCGAACGGCAAAAAATGCCTTATTCAAGCGAcagcag
gtggaggaggagatggagcggTTGCGGGAACAACACGATGTCTTGGTGGG
CCAGTTCGAAGCGATCCGATCCCAAGTAGAGCTGGAAAAATTGGAAGCGC
AGGGAGTCGTGACCAAATACGAgaaggaattggaggaggtgtaCGGGAAA
CTGAATGCCAAGGACGAGTACGCTGGGTTGCTGTGCGGGGTGAGACAGGA
TATGGACTCGGAGATGACTGACCTGTGGAGCCAAGTAGATGCGGCGGAAG
AGAAACGCGCTAAAGTGGAAGAGGCATTTGTTGCGCTAGGCAATAAATTT
AGAGCGGCATCGGCAAGGCGTCTATTCAATTTTATGGTTGCGCAACAAAG
ATGCAGGCTACGAGAGTCACTGATAATTCTGAAAAAAAATTCCAAAGCGC
CTCTTTTGCAAGCGGATGTTCCATGA

Coding sequence (CDS) from alignment at CM002463.1:761826..763601+

>rna4502 ID=rna4502|Name=rna4502|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002463.1:761826..763601+ (Nannochloropsis gaditana)
ATGAAAAAGATGGCAATTGGTAGAAACTTATACAAAGATAATGATTCGGA
TGTCGGAATTGCAAGCGACGACATGGAGCCGTGTAAGTCAGGACTCGATA
ATCAGCATCGCAAACTCTGTCACGCCGGGGAACTCGAGGACAGCGACGGG
GATGAGGAAGCCTTGATAATGGATGATGAGCACGATGAAGAAATGATCGA
AGCGATGCGTTGCACGGCCCTTCAACGAAAACAGGCCACCCCGCAGGTCA
GTCGATGGACGTCGGGGATCGGGACCATCGCGAAAGACATGCAACGACAG
CACCAACATCAGCAGCTCCAAGGCAATCTCGAGGTTTCCGCGACATCAGT
TGCTGCAACTACGGCTAAAATCTTATTGGGGCCTCCTACCTTGATGAAAC
AACTTGAGGCTGTCTTTACAGAGATCGAGCACATCTCCTCAACTCGCTCC
TCCCACACCGTTTCGCCCAAAGGCAAAACTGGTCTGGCTAGCCCCCTTCG
ACAGTCCTCCTGGTTCGGTACGCgaaaaggagagaaaaaACGACTCATCG
AGAAGTATAAGGCTCAGCTCGCGGCTTTAGAGGGAGAACGGAAAGAGGCT
TCCGAGGAAATGCGCAAGGCCATCCAGACTGGGGGCGTTGCACTGGGAAt
gctgaaggaggagtggaCGCGTACGGACATTGACACTCTCCGTAAAGCCC
GAGAGCTGGAGAAAGTGCAAGAATTGTTGGGCCGACACGAAGCTGAGAGC
ACTCAACTTCGCATCACTGTCAGTGGCCTCCGaaggcaggtggaggagct
cgtgAATAGAGCCCAGTCTGTCCCCCGGGGTTCGCAAGACGAtgagcaga
aggaggaagagttgCTGTCTGATTCGCCCTTGATGGTGTCGGCAACAAGC
TCTCCTATTCAAGAGTGTAGCGTGAGAGAGACGAGCGCCAAGACCAGCAG
TCCTCCTGCAAGCTCCGAAATGGGCAAGGAGCTTGTGGTGAACGACGCAC
GTCTCGCGCAGCTAGAGATGGAGCTGGACTTAGCATACGGGAAGCTGGAG
GCATTGAGCTTGCAGCAATGTTACTCGCAAGACAAAAGCACTGGAGTTTT
ACAGCAGTTACGAGGAGAACTGAAGGAGACAAAATTGGCGTTGGCGGCAC
GCGTGAAGAAGCACACCGAAATGAAAGAACGTTGCCGACAGTTGGAGGGG
GAACTGGGAGCCTCCGTGGGACAAATCGAGGCGGTGAAACATCAAATGGA
GCTCCGTGTCGCAAAAATGGAGGATCGGCTCAAGGAATCTATGCGGGAAG
CCTTGGAAAATGAGCGAACGGCAAAAAATGCCTTATTCAAGCGAcagcag
gtggaggaggagatggagcggTTGCGGGAACAACACGATGTCTTGGTGGG
CCAGTTCGAAGCGATCCGATCCCAAGTAGAGCTGGAAAAATTGGAAGCGC
AGGGAGTCGTGACCAAATACGAgaaggaattggaggaggtgtaCGGGAAA
CTGAATGCCAAGGACGAGTACGCTGGGTTGCTGTGCGGGGTGAGACAGGA
TATGGACTCGGAGATGACTGACCTGTGGAGCCAAGTAGATGCGGCGGAAG
AGAAACGCGCTAAAGTGGAAGAGGCATTTGTTGCGCTAGGCAATAAATTT
AGAGCGGCATCGGCAAGGCGTCTATTCAATTTTATGGTTGCGCAACAAAG
ATGCAGGCTACGAGAGTCACTGATAATTCTGAAAAAAAATTCCAAAGCGC
CTCTTTTGCAAGCGGATGTTCCATGA

Synonyms

Publications