rna4496, rna4496 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4496
Unique Name	rna4496
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2071
Alignment location	CM002463.1:741797..743790 +

Link to JBrowse

Properties


Property Name	Value
Product	XAP5 protein
Orig transcript id	gnl\|cribi\|Naga_100072g16.8028.mrna
Orig protein id	gnl\|cribi\|Naga_100072g16.8028
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:741797..743790 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100072g16	gene4338	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4496	rna4496-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26195.1	cds4485	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:741797..743790+
coding sequence from alignment at CM002463.1:741797..743790+

mRNA sequence

>rna4496 ID=rna4496|Name=rna4496|organism=Nannochloropsis gaditana|type=mRNA|length=2071bp
ACTTTTTAATGGTCCCATCAAGGAGAGTGAGCAGCTCGAATTAGAAGGCG
CTAGAAGCTCTTTTCTGGAGAGGTCAGGTAGCCGGTCTGGTGGCAGCTAA
GTCACGCCTTTTCTCCGGACGATGGGTTACTAGGTCTTTCAAACGTTTGA
TCTTGATGATGCATGGCATGCGGTGAAAACGGGGCTGTGTGTTTATCCGC
GGTAGCGAATACCTGAGACTCCAGAGATCATGGATGGTTGGGGCGCAGAA
GGAGGAGGAGGTCATCCCTTCTCCGCCGCACTGAGAAATGCTTTTATGTA
CTCACATCTCATTCCGTACATCCTACAGCCGCGCGAATACCATTGACGTG
GAACTACACGGGTGATAGACTCATGAGGATTACTGCCGACGTCGTTGTGC
ATGCTCGTGCATTTGTCAACCCAGTGAAGGAGCGGGAGCTGGACTTACGG
GGCCTGAAAATTCCTCTGATAGAAAACTTGGGCGTGACCCAAGATCAATT
TGATACCGTCGATTTGAGCGACAATGAGATCAGGCGTCTGGACAATTTTC
CACGCATGCGTCGGCTCAAAACCCTCTTGCTATGTAATAACAGCATTGCG
CGGTTTGGCTCTGCCCTTGGTGAGCAGATCTCTGAGCTCGAAGCCTTGGT
TCTCACCAACAACAAGGTCGCGAGCCTAAGCGAGATCGACCACCTGGCCT
CTCTCACCAAGCTCCGGCACCTCTCCTTGGTCGACAACCCTGTCGTTCGC
TCCCTCCACTATCGATTATACATCCTGCACAAGCTGCCCCACCTGACCGT
GCTTGACTTCCAGAAGGTGAAAGCGGACGAGCGGAGAGCAGCCAAGAAGC
TCTTTCAGTCCCAGGCGGGCCAACAGCACCTCAGCGCTATCGCGGACGAG
GGGAAGCTGCTGGCCGCAGAGTCCGCTGGGAAGGTGCGTGAGAAGCGTGT
GATGACGGAGGAAGAGAAACGGCTGGCGCAGGCCATGATCGACAAGGCGA
CCACGCCGGAGGAGCTCGAGCGCGTCGAGCGACAACTGCGTGCCGGGATA
TTCAAAGCCCCGGGCCCCCCTCCACCAGGGCAACAGCACGCACAGCCGCA
GGAGCAGGAGCCACCGCCTCAAATGCCTCTGGTTGCCGAAAATGGGGCGT
CCACAGAGAAATCAGGATCCGAGCAAGCTCTGCCCTCGGTTCCGGCCTCT
GTTCCAGCCCCCCCCGCCCCGGCAGTCGCTCCTATCCTACCTCCTTCACC
ACCAGTTACCTCGGCTCCCGCTCCCGTATCCTCTCTTCCTCCTCCGCCTC
CCGCCCCCATCGCAGATGCGACATCCTCTGTGCTCCAAGCCCCTCCGATT
CCCCCGCCCCCAACCGTGTCCGCCCCCCCCGTCGACCCTACCACGGTGTC
TGCCAAGCGGAAACGCGAAGCAAGCAGTGGGGCGGCGGGAGAAGATGGAC
AGCAACCTGGAAAGAGAGAGAAGGAAAGCAGGACGCAGGAGGCAGCCTCG
GCGGGGGAAGCCGTGCCCGCGACTCAATCGAAAGCCCATGCCGAGGCAGG
TGCAGCCAACGAAGCGCCGCCGCCGCCGGTCCCCGAGCCAGCGACGGAGG
AGAAGACAGAGGACGGAGGTGAAGGGGATCGTGAAGAGGTTTTGACGGTT
GCAGGGGTGGAAGCGATGAAAGTGGCGGAGCTGAAGGCAGCCCTGAAGGA
GAGGGGATTGGCCACGAACGGGCTCAAGGCCGAGCTGATGGATCGATTGC
GGTCGCATGTGGTGGGCTCTTGATCGGAGGGGGGATGAAATATCGGCATC
GGGGGCGTCAAATCAGGGAGAAGCCAGGGTGGGAGCAGGGGAGCCAATCA
TAAAGAAGGTCGCACCTTGGAGACGCGACTTTCCAACGAACGCCGTAAGT
TGGACGAAGCAATTCATGCCGACGAAGCATTTCTAAAGTAATTTAATGGT
AAAAGAAATTTCAGAATTGTGCAACACTGTGAGTTGGAGACAGGCATTTT
TCGAGTAAGCACGCTGAGATTCGAGAAGCGCTGCATCATTTACTTGATTC
CTCTAAGTACCTCGACTGACA

protein sequence of rna4496

>rna4496-protein ID=rna4496-protein|Name=rna4496|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MYKVGLADCAMSHAGFARGDTGIHTVEGNLAGGRAAKLTQKREKDQKEYE
AKKRKIQDDSQRAVGGIDQKFKSIQQNAFTLDFVGLKTKEELLNLKGAAE
QEAARQEKLEAEEALRKEREERKRRKEKQKKTARLSFAMGGEEEEEEEEE
GGSGGDRPTSAKGNKAANASNDKEMSIPGTSAGESALGRGEETLTVKKRK
KLVNPGAETSYLRDPEAEKEEAILRERLKQEWLEEQDRIKEEVLEVTYSY
WDGSGHRRVLRCKKGVSIGAFLQQVKAQVAVEFPDLRGISPDDMMYIKED
LIIPHNVSFYDLIVTKARGKSGPLFHFDVHDDVRLTMDARVEKDESHPGK
VVDRKWYERNKHIFPASRWEVYDPKVVRGGYSIHGGEVQAKK

mRNA from alignment at CM002463.1:741797..743790+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4496 ID=rna4496|Name=rna4496|organism=Nannochloropsis gaditana|type=mRNA|length=1994bp|location=Sequence derived from alignment at CM002463.1:741797..743790+ (Nannochloropsis gaditana)
CGGCTGTAGGATGTACGGAATGAGATGTGAGTACATAAAAGCATTTCTCA
GtgcggcggagaagggatgacctcctcctccttctgcgcCCCAACCATCC
ATGATCTCTGGAGTCTCAGGTATTCGCTACCGCGGATAAACACACAGCCC
CGTTTTCACCGCATGCCATGCATCATCAAGATCAAACGTTTGAAAGACCT
AGTAACCCATCGTCCGGAGAAAAGGCGTGACTTAGCTGCCACCAGACCGG
CTACCTGACCTCTCCAGAAAAGAGCTTCTAGCGCCTTCTAATTCGAGCTG
CTCACTCTCCTTGATGGGACCATTAAAAAGTACCGTGGAAGCCCAAAAAG
CGTGCATGACTGGCCGGAGGGACTACTGTAGCAGTCTATGCTATCTTGGC
GGACATACACCACTTTTTAATATCATTTTGCACGGAAATAGTTCtgcttt
catcctcctcctcctaggAGTCcatgctttcttccctcatcACGATGTCT
AATATAAAACAATGTATGTATATTATTATTCCCCCGGCTGTGCATCCCCG
CCTTGGACATTCATCGAGCTGTACATACTGCAACAAAAGAAGATAGTCCT
CCATGTAGAGGACTCTGCAATTCGTATCCTTCGTGTCACAAACTCATACC
GTCAGAATTTCAACGTCTTCACAGGTACAAGGTTGGCCTTGCCGACTGCG
CGATGTCGCACGCCGGGTTTGCTCGCGGTGATACCGGCATTCACACCGTC
GAAGGCAACTTGGCAGGGGGGCGTGCGGCTAAGCTGACCCAAAAACGGGA
AAAGGACCAGAAGGAGTACGAGGCCAAAAAGGTAAAGGCCCCTGACACGT
TTCTCGGGTCGTAATTGGCAGGAACCTGAGGCGACGTTACACAAACTTGC
GCTCGTCTTCTTTATCTCACTACACAGCGCAAGATCCAAGATGACTCTCA
ACGAGCTGTCGGGGGGATCGACCAGAAGTTCAAAAGCATTCAGCAGAATG
CCTTCACTCTGGACTTCGTGGGCCTGAagaccaaggaggagctgctcaAC
TTAAAAGGGGCGGCGGAACAGGAGGCGGCGCGTCAGGAAAAactcgaggc
ggaggaagcattgcgtaaggagagagaagagaggaagagaaggaaggaga
agcagaagAAAACCGCCCGTTTGAGTTTTGCGatggggggcgaggaggag
gaggaagaggaggaggagggagggagtggcggGGACAGGCCCACCTCTGC
CAAGGGAAACAAAGCCGCCAATGCTTCGAATGACAAGGAGATGAGCATCC
CCGGCACGAGCGCGGGAGAAAGCGCGTTGggtcgaggggaggagacgttg
acggtgaagaagaggaagaaactTGTAAATCCGGGGGCTGAGACGAGTTA
TCTCCGAGACccagaggcggagaaggaggaggcgattcTTCGGGAGCGCT
TGAAGCAGGAAtggctggaggagcaggaccggatcaaggaggaggtgctg
gaggtgaCGTACTCGTACTGGGACGGATCGGGGCACCGGCGCGTGCTTCG
GTGCAAGAAGGGCGTGAGCATAGGGGCCTTCCTCCAACAGGTGAAGGcgc
aggtggcggtggagttCCCGGACCTCCGGGGGATCTCGCCGGACGACATG
ATGTATATCAAGGAGGATCTGATCATCCCCCACAACGTCTCCTTCTACGA
CCTGATCGTCACCAAGGCCCGGGGCAAGTCCGGCCCCCTTTTCCACTTCG
ACGTCCACGACGATGTGCGCCTGACCATGGACGCGCGcgtcgagaaggac
gagagcCACCCGGGCAAGGTGGTGGACCGGAAGTGGTACGAGCGGAACAA
GCACATCTTCCCCGCCAGCCGGTGGGAGGTGTATGACCCCAAGGTGGTGC
GCGGCGGTTACAGCATCCACGGGGGAGAGGTGCAGGCGAAGAAGtaaaaa
aaaggcgcgaaggcTTCCCGCTGGAAGGAAATATGCATGCATGC

Coding sequence (CDS) from alignment at CM002463.1:741797..743790+

>rna4496 ID=rna4496|Name=rna4496|organism=Nannochloropsis gaditana|type=CDS|length=3537bp|location=Sequence derived from alignment at CM002463.1:741797..743790+ (Nannochloropsis gaditana)
ATGTACAAGGTTGGCCTTGCCGACTGCGCGATGTCGCACGCCGGGTTTGC
TCGCGGTGATACCGGCATTCACACCGTCGAAGGCAACTTGGCAGGGGGGC
GTGCGGCTAAGCTGACCCAAAAACGGGAAAAGGACCAGAAGGAGTACGAG
GCCAAAAAGCGCAAGATCCAAGATGACTCTCAACGAGCTGTCGGGGGGAT
CGACCAGAAGTTCAAAAGCATTCAGCAGAATGCCTTCACTCTGGACTTCG
TGGGCCTGAagaccaaggaggagctgctcaACTTAAAAGGGGCGGCGGAA
CAGGAGGCGGCGCGTCAGGAAAAactcgaggcggaggaagcattgcgtaa
ggagagagaagagaggaagagaaggaaggagaagcagaagAAAACCGCCC
GTTTGAGTTTTGCGatggggggcgaggaggaggaggaagaggaggaggag
ggagggagtggcggGGACAGGCCCACCTCTGCCAAGGGAAACAAAGCCGC
CAATGCTTCGAATGACAAGGAGATGAGCATCCCCGGCACGAGCGCGGGAG
AAAGCGCGTTGggtcgaggggaggagacgttgacggtgaagaagaggaag
aaactTGTAAATCCGGGGGCTGAGACGAGTTATCTCCGAGACccagaggc
ggagaaggaggaggcgattcTTCGGGAGCGCTTGAAGCAGGAAtggctgg
aggagcaggaccggatcaaggaggaggtgctggaggtgaCGTACTCGTAC
TGGGACGGATCGGGGCACCGGCGCGTGCTTCGGTGCAAGAAGGGCGTGAG
CATAGGGGCCTTCCTCCAACAGGTGAAGGcgcaggtggcggtggagttCC
CGGACCTCCGGGGGATCTCGCCGGACGACATGATGTATATCAAGGAGGAT
CTGATCATCCCCCACAACGTCTCCTTCTACGACCTGATCGTCACCAAGGC
CCGGGGCAAGTCCGGCCCCCTTTTCCACTTCGACGTCCACGACGATGTGC
GCCTGACCATGGACGCGCGcgtcgagaaggacgagagcCACCCGGGCAAG
GTGGTGGACCGGAAGTGGTACGAGCGGAACAAGCACATCTTCCCCGCCAG
CCGGTGGGAGGTGTATGACCCCAAGGTGGTGCGCGGCGGTTACAGCATCC
ACGGGGGAGAGGTGCAGGCGAAGAAGtaaATGTACAAGGTTGGCCTTGCC
GACTGCGCGATGTCGCACGCCGGGTTTGCTCGCGGTGATACCGGCATTCA
CACCGTCGAAGGCAACTTGGCAGGGGGGCGTGCGGCTAAGCTGACCCAAA
AACGGGAAAAGGACCAGAAGGAGTACGAGGCCAAAAAGCGCAAGATCCAA
GATGACTCTCAACGAGCTGTCGGGGGGATCGACCAGAAGTTCAAAAGCAT
TCAGCAGAATGCCTTCACTCTGGACTTCGTGGGCCTGAagaccaaggagg
agctgctcaACTTAAAAGGGGCGGCGGAACAGGAGGCGGCGCGTCAGGAA
AAactcgaggcggaggaagcattgcgtaaggagagagaagagaggaagag
aaggaaggagaagcagaagAAAACCGCCCGTTTGAGTTTTGCGatggggg
gcgaggaggaggaggaagaggaggaggagggagggagtggcggGGACAGG
CCCACCTCTGCCAAGGGAAACAAAGCCGCCAATGCTTCGAATGACAAGGA
GATGAGCATCCCCGGCACGAGCGCGGGAGAAAGCGCGTTGggtcgagggg
aggagacgttgacggtgaagaagaggaagaaactTGTAAATCCGGGGGCT
GAGACGAGTTATCTCCGAGACccagaggcggagaaggaggaggcgattcT
TCGGGAGCGCTTGAAGCAGGAAtggctggaggagcaggaccggatcaagg
aggaggtgctggaggtgaCGTACTCGTACTGGGACGGATCGGGGCACCGG
CGCGTGCTTCGGTGCAAGAAGGGCGTGAGCATAGGGGCCTTCCTCCAACA
GGTGAAGGcgcaggtggcggtggagttCCCGGACCTCCGGGGGATCTCGC
CGGACGACATGATGTATATCAAGGAGGATCTGATCATCCCCCACAACGTC
TCCTTCTACGACCTGATCGTCACCAAGGCCCGGGGCAAGTCCGGCCCCCT
TTTCCACTTCGACGTCCACGACGATGTGCGCCTGACCATGGACGCGCGcg
tcgagaaggacgagagcCACCCGGGCAAGGTGGTGGACCGGAAGTGGTAC
GAGCGGAACAAGCACATCTTCCCCGCCAGCCGGTGGGAGGTGTATGACCC
CAAGGTGGTGCGCGGCGGTTACAGCATCCACGGGGGAGAGGTGCAGGCGA
AGAAGtaaATGTACAAGGTTGGCCTTGCCGACTGCGCGATGTCGCACGCC
GGGTTTGCTCGCGGTGATACCGGCATTCACACCGTCGAAGGCAACTTGGC
AGGGGGGCGTGCGGCTAAGCTGACCCAAAAACGGGAAAAGGACCAGAAGG
AGTACGAGGCCAAAAAGCGCAAGATCCAAGATGACTCTCAACGAGCTGTC
GGGGGGATCGACCAGAAGTTCAAAAGCATTCAGCAGAATGCCTTCACTCT
GGACTTCGTGGGCCTGAagaccaaggaggagctgctcaACTTAAAAGGGG
CGGCGGAACAGGAGGCGGCGCGTCAGGAAAAactcgaggcggaggaagca
ttgcgtaaggagagagaagagaggaagagaaggaaggagaagcagaagAA
AACCGCCCGTTTGAGTTTTGCGatggggggcgaggaggaggaggaagagg
aggaggagggagggagtggcggGGACAGGCCCACCTCTGCCAAGGGAAAC
AAAGCCGCCAATGCTTCGAATGACAAGGAGATGAGCATCCCCGGCACGAG
CGCGGGAGAAAGCGCGTTGggtcgaggggaggagacgttgacggtgaaga
agaggaagaaactTGTAAATCCGGGGGCTGAGACGAGTTATCTCCGAGAC
ccagaggcggagaaggaggaggcgattcTTCGGGAGCGCTTGAAGCAGGA
AtggctggaggagcaggaccggatcaaggaggaggtgctggaggtgaCGT
ACTCGTACTGGGACGGATCGGGGCACCGGCGCGTGCTTCGGTGCAAGAAG
GGCGTGAGCATAGGGGCCTTCCTCCAACAGGTGAAGGcgcaggtggcggt
ggagttCCCGGACCTCCGGGGGATCTCGCCGGACGACATGATGTATATCA
AGGAGGATCTGATCATCCCCCACAACGTCTCCTTCTACGACCTGATCGTC
ACCAAGGCCCGGGGCAAGTCCGGCCCCCTTTTCCACTTCGACGTCCACGA
CGATGTGCGCCTGACCATGGACGCGCGcgtcgagaaggacgagagcCACC
CGGGCAAGGTGGTGGACCGGAAGTGGTACGAGCGGAACAAGCACATCTTC
CCCGCCAGCCGGTGGGAGGTGTATGACCCCAAGGTGGTGCGCGGCGGTTA
CAGCATCCACGGGGGAGAGGTGCAGGCGAAGAAGtaa

Synonyms

Publications