rna4490, rna4490 (mRNA) Nannochloropsis gaditana

Overview
Namerna4490
Unique Namerna4490
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1121
Alignment locationCM002463.1:720989..723283 -

Link to JBrowse

Properties
Property NameValue
Productpyruvate kinase
Orig transcript idgnl|cribi|Naga_100072g23.8016.mrna
Orig protein idgnl|cribi|Naga_100072g23.8016
GenePYK
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:720989..723283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PYKgene4332Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26183.1cds4479Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4490rna4490-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4490 ID=rna4490|Name=rna4490|organism=Nannochloropsis gaditana|type=mRNA|length=1121bp
GATTGCGTCTCATTTTGCTTTATCTCATGTATGTCACCCTAAAATTCTCG
CCTCGTGTCCGCCACAGGTGGCTTGCTCTTGTCTAGGCAACTATGAAGCT
CATTCTGGCCACAAAAATCGTCAATATCCCTGAAGGAGTGACGCTGCACA
TCAAGTCTCGACATGTGACCGTTAAAGGTCCCCGTGGAGAGCTCTCCCGT
GCATTCAAACATCTGAACATCGCCTTCGAGCTCGTGGGCGGAAACAAAGA
CAAGGGGACGAACCCGAAGAAGCTGAAGGTCGACTTGTGGTTCGCCAACC
GCAAGCAGCTCGCCACCATCCGCACCGTCTGCTCTCACATCGAGAATCTG
ATGACCGGTGTGACTAAGGGCTTCTTGTACAGAATGCGCTTTGTCTACGC
ACATTTCCCCATCAACGTATCACTGACGGACAAGACGGTGGAAGTCCGCA
ACTTCTTGGGGGAGAAGCGTGTGCGACGCGTGGAGCTGCTGCCAGGGGTC
GAGTACGTGCGCTCCTCGGATGTCAAAGATCAGATCGAGTTGAAAGGAAA
CGACCTAACGGCGGTGTCCCTGACAGCCGCCCGCATTCAGCAATGCACGA
CGGTCAAGCGCAAGGATATTCGAAAGTTCCTGGACGGGATCTATGTCTCT
CAGAAGACCCATATTGTCACCGCATAAGGCCAACGCGCGAGGATGGGAAA
GCCTGTATCGTACCTAAGTGGCAAGAAAGGGGATGCACAACCTCTGAAAC
GTCGGTGCTCAAGGCAGGCATCTGCATGCGAGTGAGGGTCTCCGCTGGAT
GGGAGTACCTGGGTGTCTCTGACCAAAGAGAAGCAAAGCGTGGGAGGGAG
GGAAGCATAAGGACAAAAAAACTCTTTTTTCACGATTGCTACGATTGGGG
TTTTAATCTCGTTGCTGATGCTGCCAAAATTTATTTTTTGATGGATGGGG
TTGCCGATTCTTTCTTAAGAGTCGTGACGAAAGAACCCAGGATTATGACC
TACAAGTAACCGCCGATGGCATGTCAATAGCCTTTTTGAGGATGTCCGGG
AATGATTCGCCTTTCCATATATCCTTCGCATGAGACATGCTGCGGATTGC
TGTTCCCACAGCTCACGGCTC
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protein sequence of rna4490

>rna4490-protein ID=rna4490-protein|Name=rna4490|organism=Nannochloropsis gaditana|type=polypeptide|length=562bp
MQTLFLATLVICASVSTAFVMPLRPCTQAARAGSQSRISSIRGIRSRPLR
MVTHPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKLFLAGVD
VFRLNFSHGAHEEKKALFDIIRGLEVKYNHPIAILADLQGPKLRVGTFDH
DKVILVDGQAFRFDLSDEPGDAARVNLPHPEIINTLQVGDTLLLDDGKLR
MTVSGKGEGYVDTLVNVGGALSNRKGVNTPSVVLPISPLTPKDRKDLEFA
LSIGVDWVALSFVQQAQDIAELRTLVGNKAKIMAKLEKPSAVEEGVVDDI
IMLSDGIMVARGDLGVEMRPEDVPVIQKQIIDKCRKYGRPVVVATQMLES
MIESPTPTRAEASDVATAIYDGADAIMLSAESAAGKYPVDAVMMQQRVIL
RVEEDKAYRKNLARSNPNRVEKSATDAITNAAREIAATIGACALVVFTAR
GTTVLRASMGRPGVPILAITPEIETARSLALTWGVYPAAVETRAEHETFP
DVLHKICSVAKDKGLANRPDDLLVVTAGLPFGSPGVANVIRVVPASGPED
WVVGGDKNLNTI
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mRNA from alignment at CM002463.1:720989..723283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4490 ID=rna4490|Name=rna4490|organism=Nannochloropsis gaditana|type=mRNA|length=2295bp|location=Sequence derived from alignment at CM002463.1:720989..723283- (Nannochloropsis gaditana)
TTTTTTGTGAATCAGGGTCAGTCGGCTGTGTGTCTCAAGGGAGCTTTTTG
TGGAGTTAACGCAAAGCGAGCCAGGAGTACGTACGCGCATTGCTGCCTTC
GAACAAGATGCAGACCCTCTTTTTGGCCACTCTGGTAATATGCGCGAGTG
TAAGTACTGCTTTCGTGATGCCTCTTCGACCATGTACTCAGGCGGCTCGC
GCTGGGAGCCAAAGCAGAATTAGCAGCATCCGCGGGATTCGCTCCAGGCC
CCTCCGCATGGTGACCCATCCGGACGTCGACAACGAATACAAGCGCAAGC
TGTCGGAGCAACGAAGATGGACGAAGAGCACGAAGCAGTTGGCCACGTTG
GGACCCGTCTCGAACACCGAAGAGATGATTGAGAAATTGTTTCTGGCGGG
CGTGGACGTCTTCCGCCTCAATTTCTCGCACGGCGCGCATGAGGAGAAAA
AGGCATTATTTGATATCATCCGTGGATTGGAGGTCAAGTACAACCACCCT
ATTGCTATTTTAGCTGATTTGCAGGGTCCCAAGCTTCGAGTGGGGACTTT
CGATCACGACAAGGTCATTTTGGTGGATGGCCAAGCCTTCCGGTTCGACT
TGAGTGACGAGCCTGGTGACGCCGCGCGCGTGAACCTACCGCACCCAGAG
ATCATCAACACGCTTCAAGTGGGAGACACGCTCCTTCTGGACGATGGCAA
GCTTCGCATGACCGTCAGCGGCAAAGGCGAGGGCTATGTGGATACCTTGG
TGAATGTGGGGGGGGCGCTTTCGAACCGCAAGGGAGTGAACACGCCCTCC
GTGGTCCTCCCGATCTCCCCACTGACGCCCAAGGACCGAAAGGATTTGGA
ATTCGCCCTGTCTATCGGCGTCGATTGGGTGGCTTTGTCATTCGTGCAGC
AAGCCCAAGATATAGCGGAGCTCCGTACGCTGGTGGGAAACAAGGCCAAA
ATTATGGCCAAACTCGAGAAGCCCTCGGCGGTCGAGGAAGGCGTGGTGGA
TGACATCATTATGCTTTCAGACGGAATTATGGTGGCTCGCGGGGATCTGG
GCGTGGAAATGCGCCCGGAAGACGTGCCTGTGATCCAGAAACAAATTATT
GACAAGTGTCGCAAGTACGGGCGCCCCGTGGTGGTGGCGACGCAGATGCT
CGAGTCCATGATTGAGAGCCCGACCCCTACGCGAGCAGAGGCCTCGGACG
TGGCCACGGCCATCTATGACGGTGCGGATGCGATCATGTTGAGCGCCGAG
TCGGCGGCGGGGAAGTACCCCGTGGACGCGGTGATGATGCAGCAACGGGT
CATCCTGAGGGTGGAAGAAGATAAAGCCTACCGGAAGAACCTGGCCCGCT
CCAACCCGAACCGTGTTGAGAAATCCGCCACGGACGCGATCACGAACGCG
GCCCGAGAAATCGCCGCCACGATTGGGGCCTGTGCGTTGGTCGTCTTCAC
CGCGAGGGGGACGACGGTGCTCCGTGCCTCCATGGGCCGGCCGGGGGTGC
CCATCTTGGCTATTACTCCGGAAATCGAAACGGCGCGGTCCTTAGCCTTG
ACCTGGGGCGTATACCCGGCCGCTGTGGAGACACGCGCGGAGCATGAAAC
CTTCCCGGACGTGTTGCACAAAATCTGCTCGGTGGCGAAGGACAAGGGCC
TAGCAAATCGGCCGGACGACCTCCTGGTGGTGACTGCCGGCTTGCCCTTT
GGCTCCCCCGGCGTCGCGAACGTGATCCGGGTGGTGCCCGCGTCGGGGCC
GGAGGACTGGGTGGTGGGCGGCGACAAGAACCTGAACACGATTTAAAGTC
TCAGCAAGGGCAGGAGGAGGCAGGGGAGGAAAGCGGGAGGCGTTCTGTTT
CATTATAGTTTCAAAGACAAGGGGTGTAAGCGCGCCGTTCCCTGTCGCTC
GATGTTCTGTATGTTGAAGCGTTTTGATTGTATCGTCTAGAAGCAGCTTG
CCTAAGTGCGTGGACGTGCGGGTGAAGGGGTTCGCTAGACGACTCTTTGG
AGTTTCTCGCTGTCGCGTGATTTTCGTTGTGTTAAAACCACAGAGCCGTG
AGCTGTGGGAACAGCAATCCGCAGCATGTCTCATGCGAAGGATATATGGA
AAGGCGAATCATTCCCGGACATCCTCAAAAAGGCTATTGACATGCCATCG
GCGGTTACTTGTAGGTCATAATCCTGGGTTCTTTCGTCACGACTCTTAAG
AAAGAATCGGCAACCCCATCCATCAAAAAATAAATTTTGGCAGCATCAGC
AACGAGATTAAAACCCCAATCGTAGCAATCGTGAAAAAAGAGTTT
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Coding sequence (CDS) from alignment at CM002463.1:720989..723283-

>rna4490 ID=rna4490|Name=rna4490|organism=Nannochloropsis gaditana|type=CDS|length=1689bp|location=Sequence derived from alignment at CM002463.1:720989..723283- (Nannochloropsis gaditana)
ATGCAGACCCTCTTTTTGGCCACTCTGGTAATATGCGCGAGTGTAAGTAC
TGCTTTCGTGATGCCTCTTCGACCATGTACTCAGGCGGCTCGCGCTGGGA
GCCAAAGCAGAATTAGCAGCATCCGCGGGATTCGCTCCAGGCCCCTCCGC
ATGGTGACCCATCCGGACGTCGACAACGAATACAAGCGCAAGCTGTCGGA
GCAACGAAGATGGACGAAGAGCACGAAGCAGTTGGCCACGTTGGGACCCG
TCTCGAACACCGAAGAGATGATTGAGAAATTGTTTCTGGCGGGCGTGGAC
GTCTTCCGCCTCAATTTCTCGCACGGCGCGCATGAGGAGAAAAAGGCATT
ATTTGATATCATCCGTGGATTGGAGGTCAAGTACAACCACCCTATTGCTA
TTTTAGCTGATTTGCAGGGTCCCAAGCTTCGAGTGGGGACTTTCGATCAC
GACAAGGTCATTTTGGTGGATGGCCAAGCCTTCCGGTTCGACTTGAGTGA
CGAGCCTGGTGACGCCGCGCGCGTGAACCTACCGCACCCAGAGATCATCA
ACACGCTTCAAGTGGGAGACACGCTCCTTCTGGACGATGGCAAGCTTCGC
ATGACCGTCAGCGGCAAAGGCGAGGGCTATGTGGATACCTTGGTGAATGT
GGGGGGGGCGCTTTCGAACCGCAAGGGAGTGAACACGCCCTCCGTGGTCC
TCCCGATCTCCCCACTGACGCCCAAGGACCGAAAGGATTTGGAATTCGCC
CTGTCTATCGGCGTCGATTGGGTGGCTTTGTCATTCGTGCAGCAAGCCCA
AGATATAGCGGAGCTCCGTACGCTGGTGGGAAACAAGGCCAAAATTATGG
CCAAACTCGAGAAGCCCTCGGCGGTCGAGGAAGGCGTGGTGGATGACATC
ATTATGCTTTCAGACGGAATTATGGTGGCTCGCGGGGATCTGGGCGTGGA
AATGCGCCCGGAAGACGTGCCTGTGATCCAGAAACAAATTATTGACAAGT
GTCGCAAGTACGGGCGCCCCGTGGTGGTGGCGACGCAGATGCTCGAGTCC
ATGATTGAGAGCCCGACCCCTACGCGAGCAGAGGCCTCGGACGTGGCCAC
GGCCATCTATGACGGTGCGGATGCGATCATGTTGAGCGCCGAGTCGGCGG
CGGGGAAGTACCCCGTGGACGCGGTGATGATGCAGCAACGGGTCATCCTG
AGGGTGGAAGAAGATAAAGCCTACCGGAAGAACCTGGCCCGCTCCAACCC
GAACCGTGTTGAGAAATCCGCCACGGACGCGATCACGAACGCGGCCCGAG
AAATCGCCGCCACGATTGGGGCCTGTGCGTTGGTCGTCTTCACCGCGAGG
GGGACGACGGTGCTCCGTGCCTCCATGGGCCGGCCGGGGGTGCCCATCTT
GGCTATTACTCCGGAAATCGAAACGGCGCGGTCCTTAGCCTTGACCTGGG
GCGTATACCCGGCCGCTGTGGAGACACGCGCGGAGCATGAAACCTTCCCG
GACGTGTTGCACAAAATCTGCTCGGTGGCGAAGGACAAGGGCCTAGCAAA
TCGGCCGGACGACCTCCTGGTGGTGACTGCCGGCTTGCCCTTTGGCTCCC
CCGGCGTCGCGAACGTGATCCGGGTGGTGCCCGCGTCGGGGCCGGAGGAC
TGGGTGGTGGGCGGCGACAAGAACCTGAACACGATTTAA
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Synonyms
Publications