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Properties
| Property Name | Value |
|---|
| Product | membrane protein |
| Orig transcript id | gnl|cribi|Naga_100072g27.8026.mrna |
| Orig protein id | gnl|cribi|Naga_100072g27.8026 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:714478..716740 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4487 ID=rna4487|Name=rna4487|organism=Nannochloropsis gaditana|type=mRNA|length=850bp
CTGGGCATAAAAATAAAGCAGCATCCTCTGAGTGACAGTAATGTGCGATC
TACGCCATGCATCGATTCCTGGACGTACGCTCACTCTTTTTAATTCCGCG
GTATGCTAAATTCGACAAATTTGCAGGCCGCACGACTGGAATACATCAGA
ACGTGGCACGTGAATAAAAATGCCGTACGCTCCCTCTTCGGCAGGGTTGC
CTACGCTAATCCCTGTCTCCCCCTCACGGCCGCATTCCCGCCCCCCTCAC
TCAAGGACTGTTTCCAAGGAGAGCATGAATGATGCGACCGTATTGTACAC
AGCGGTGAAGTCATTGTACGATCTAACGGGAGATGTGAAGGCGGTGTTTG
GAAAGCATTACGTGCCCGAAACCGCATCCTTCATCGATCCCCTGGTCACG
GTCACTCACGATACGAAGGCTTGCGTGGGCCAGTTCCGTGCTTTGCGTGG
GCTTTTCTCCAGGGCAGAAATCAAGACTCGCAGTGTCACCCGTGGAGGGA
ATCATCTAGTCATTGACTGGCAGATAAAATACTTCCCCCGGGGCTTGCCG
TCCCCTGTGTGCCTTCTCTCTGCACACCATCACAATCTTGACCTTGGAGA
CCGAGAGCGAGGCCCCAGAAACCAGCACGGGCTCGATGCGCATCTCTCAT
CACGTCGATCATTGGTCACTCCACGAGCTCCTGTCCTCCGTGCCCGTTTT
GTCTTTTTTCTACAGCACGTTGTGGCGCCCGATTTTTGGCAAAAGTAGCT
CATTTTTGACGAACGCTGTGTGCGACTACTTTGAAGGCCGAAGTGGACGA
GGTGAAGACGAAGGAGAAGGCACGACCCATGGCGCTGACTTCTTTGGGGG back to topprotein sequence of rna4487 >rna4487-protein ID=rna4487-protein|Name=rna4487|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MPFKKYVAVIGSSGGGGASHAGSDVYGLLIALRQELAQCEVGIAVAQLVD
CSTPLDFAASQTPTVLWTFNTETNQVERSYEGTLEAVNERAQLMDRAISR
MIIGDEKQRVDGLISISADPEAVNQFTFLAAAKAKIPVVGTGGTSLGKAA
GDLGCDVVGNSGGSVSTTIETKALSFTASLASFWGLPYDPLISYPQLHSI
LAACLPVFVAVVLAKEAWRKALALGISDWWLARQTHATFTGLSDIANALP
VVVAVVTASQVGRLGEAGLLSGVLAGMLACGAGGSEEGTGSESTVLAGAL
TGLLAGWLSRQLLVATAKSLWVPATASSIITAGAAGLSAGLGGRLLIRRP
CAWVSDTFRSILLYLEAPVVVGNDAGGGRGGVAGISAFQWALALAVGPGV
TYGSQRGLYHVVLLPLILFEMERGDPSFLGAVDYCSLCLVSAGVTVATWL
LPLPPDHPSNGGRDPRPLARRGAYTNLVWGDFVEACYPLVQHSVFLTGAV
YAASTLSTAVLLQEGGRSSAYMPAPLSLWLASHVEEGEGSAWRASLIAFG
LPFSATLLRNGWHRFGGWE back to topmRNA from alignment at CM002463.1:714478..716740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4487 ID=rna4487|Name=rna4487|organism=Nannochloropsis gaditana|type=mRNA|length=2263bp|location=Sequence derived from alignment at CM002463.1:714478..716740+ (Nannochloropsis gaditana)
TGGGGGATGCGTGAGGCATCAACACGGCAAAGACATGATTTGCGGCCTCC
CTCAGAGGTCGTGTCTCGGCGAGCAAGAACACCGCGAGCCATGCCCGGAG
ATCAACTCGTAGAGTGACGACTGTCTGCACCACTCATATCTCCTCACGGA
GATCTCCTCCAACACACGAGCGGTCCAACCGGAAAGTTAAAGACGTGCGC
GCAATCTTTTGACCAATTTTTCCGTAGCGGATCATCTGCAACAGGCAGCA
TCGACCAAGTCGAAGGCCGGAagtaacctccccccccttttaccgccccg
tcctgctcttctAGCCCACTACGTTCTGGCATACGGTGGGTAGGCTCCAT
CAACACTATGCCCTTCAAGAAATATGTGGCTGTTATCGGTAgcagcggcg
ggggcggagcaAGTCATGCGGGAAGTGACGTCTACGGGCTCTTAATTGCA
TTGCGACAGGAGCTGGCACAGTGCGAAGTTGGTATTGCCGTTGCACAGGT
ATGGAAGCAAAGCGCCCTTGATATGATATATACACTAAGCACACCGATTG
GCTTCTTTGATGTGGATACTTGGGCCTGAACAGGACAAGAAAGGACACTG
GTGTGAATCCTCAAGTTCATTCATGCACTCGCCCGCACTCGTCACAGCTC
GTGGATTGCAGCACGCCTCTGGACTTCGCGGCCTCCCAGACACCGACAGT
CCTATGGACGTTCAATACTGAGACGAATCAGGTCGAACGAAGCTATGAGG
GTACCCTCGAGGCGGTCAATGAGCGGGCGCAATTGATGGATCGGGCCATC
AGCCGGATGATCATCGGCGACGAGAAGCAGCGGGTCGATGGCCTCATCAG
CATCAGTGCGGACCCCGAGGCTGTCAATCAATTCACTTTCCTTGCCGCGG
CCAAGGCTAAGATTCCTGTCGTCGGCACTGGTGGCACTTCGTTGGGTAAA
GCCGCGGGCGACTTGGGCTGTGATGTTGTGGGCAACAGCGGCGGGTCCGT
CTCAACAACGATAGAGACGAAAGCCTTGTCGTTCACAGCCAGTCTAGCCA
GCTTCTGGGGCCTTCCCTACGACCCATTGATTTCTTATCCACAGCTTCAC
AGTATCCTGGCCGCGTGTCTCCCGGTTTTCGTGGCGGTAGTCCTGGCCAA
GGAAGCTTGGAGGAAGGCTCTGGCGCTGGGTATCTCGGATTGGTGGCTGG
CACGTCAGACTCACGCCACCTTCACAGGGCTGTCGGACATCGCGAATGCC
TTGCCAGTGGTAGTGGCGGTGGTGACGGCCTCTCAAGTGGGAAGACTGGG
AGAGGCCGGGCTCTTGTCGGGGGTATTGGCGGGCATGCTCGCCTgtggcg
cgggagggagcgaggagggtaCCGGGTCTGAGAGCACCGTGCTTGCCGGA
GCCCTTACGGGCTTGTTGGCAGGATGGCTGAGTCGGCAGCTTTTGGTTGC
CACGGCAAAGTCCCTGTGGGTGCCAGCCACGGCATCTTCCATCATAACAG
CCGGGGCAGCGGGGCTATCTGCTGGGCTGGGGGGTAGATTACTCATTCGA
CGGCCATGCGCCTGGGTCTCGGACACATTCCGAAGCATTCTTCTGTACTT
GGAAGCTCCTGTGGTCGTGGGAAACGATGCAGGcgggggacgtggtggcg
TGGCGGGAATCAGCGCCTTTCAGTGGGCGctcgccctggccgtgggTCCC
GGGGTGACCTACGGCTCCCAAAGGGGTCTTTATCACGTCGTACTCCTCCC
GCTCATCCTCTTTGAGATGGAGCGCGGagatccctccttcttggggGCGG
TGGATTACTGCTCGCTCTGTCTAGTGTCTGCGGGCGTGACGGTGGCGACC
tggctcctgcccctccctcccgaccacCCCAGCAACGGGGGCCGGGACCC
GCGTCCCCTGGCAAGACGGGGGGCCTACACGAACTTGGTGTGGGGCGACT
TCGTGGAGGCTTGCTATCCACTCGTCCAGCACAGCGTCTTCTTGACCGGG
GCGGTGTACGCGGCGTCAACCCTGTCTACGGCCGTGCTTctgcaggaagg
gggaaggtcgTCCGCTTACATGCCGGCGCCTCTGAGTCTGTGGCTGGCCT
CTCACgtcgaagaaggggagggaagcgcatGGCGAGCTTCGTTGATAGCG
TTTGGGCTGCCGTTTTCGGCGACGCTGTTGCGGAACGGATGGCATCGCTT
CGGGGGTTGGGAGTAAGCGGCTTGCTGATGTATGGAAAGCAACGGATGTT
CATTTTACGCACC back to topCoding sequence (CDS) from alignment at CM002463.1:714478..716740+ >rna4487 ID=rna4487|Name=rna4487|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at CM002463.1:714478..716740+ (Nannochloropsis gaditana)
ATGCCCTTCAAGAAATATGTGGCTGTTATCGGTAgcagcggcgggggcgg
agcaAGTCATGCGGGAAGTGACGTCTACGGGCTCTTAATTGCATTGCGAC
AGGAGCTGGCACAGTGCGAAGTTGGTATTGCCGTTGCACAGCTCGTGGAT
TGCAGCACGCCTCTGGACTTCGCGGCCTCCCAGACACCGACAGTCCTATG
GACGTTCAATACTGAGACGAATCAGGTCGAACGAAGCTATGAGGGTACCC
TCGAGGCGGTCAATGAGCGGGCGCAATTGATGGATCGGGCCATCAGCCGG
ATGATCATCGGCGACGAGAAGCAGCGGGTCGATGGCCTCATCAGCATCAG
TGCGGACCCCGAGGCTGTCAATCAATTCACTTTCCTTGCCGCGGCCAAGG
CTAAGATTCCTGTCGTCGGCACTGGTGGCACTTCGTTGGGTAAAGCCGCG
GGCGACTTGGGCTGTGATGTTGTGGGCAACAGCGGCGGGTCCGTCTCAAC
AACGATAGAGACGAAAGCCTTGTCGTTCACAGCCAGTCTAGCCAGCTTCT
GGGGCCTTCCCTACGACCCATTGATTTCTTATCCACAGCTTCACAGTATC
CTGGCCGCGTGTCTCCCGGTTTTCGTGGCGGTAGTCCTGGCCAAGGAAGC
TTGGAGGAAGGCTCTGGCGCTGGGTATCTCGGATTGGTGGCTGGCACGTC
AGACTCACGCCACCTTCACAGGGCTGTCGGACATCGCGAATGCCTTGCCA
GTGGTAGTGGCGGTGGTGACGGCCTCTCAAGTGGGAAGACTGGGAGAGGC
CGGGCTCTTGTCGGGGGTATTGGCGGGCATGCTCGCCTgtggcgcgggag
ggagcgaggagggtaCCGGGTCTGAGAGCACCGTGCTTGCCGGAGCCCTT
ACGGGCTTGTTGGCAGGATGGCTGAGTCGGCAGCTTTTGGTTGCCACGGC
AAAGTCCCTGTGGGTGCCAGCCACGGCATCTTCCATCATAACAGCCGGGG
CAGCGGGGCTATCTGCTGGGCTGGGGGGTAGATTACTCATTCGACGGCCA
TGCGCCTGGGTCTCGGACACATTCCGAAGCATTCTTCTGTACTTGGAAGC
TCCTGTGGTCGTGGGAAACGATGCAGGcgggggacgtggtggcgTGGCGG
GAATCAGCGCCTTTCAGTGGGCGctcgccctggccgtgggTCCCGGGGTG
ACCTACGGCTCCCAAAGGGGTCTTTATCACGTCGTACTCCTCCCGCTCAT
CCTCTTTGAGATGGAGCGCGGagatccctccttcttggggGCGGTGGATT
ACTGCTCGCTCTGTCTAGTGTCTGCGGGCGTGACGGTGGCGACCtggctc
ctgcccctccctcccgaccacCCCAGCAACGGGGGCCGGGACCCGCGTCC
CCTGGCAAGACGGGGGGCCTACACGAACTTGGTGTGGGGCGACTTCGTGG
AGGCTTGCTATCCACTCGTCCAGCACAGCGTCTTCTTGACCGGGGCGGTG
TACGCGGCGTCAACCCTGTCTACGGCCGTGCTTctgcaggaagggggaag
gtcgTCCGCTTACATGCCGGCGCCTCTGAGTCTGTGGCTGGCCTCTCACg
tcgaagaaggggagggaagcgcatGGCGAGCTTCGTTGATAGCGTTTGGG
CTGCCGTTTTCGGCGACGCTGTTGCGGAACGGATGGCATCGCTTCGGGGG
TTGGGAGTAAATGCCCTTCAAGAAATATGTGGCTGTTATCGGTAgcagcg
gcgggggcggagcaAGTCATGCGGGAAGTGACGTCTACGGGCTCTTAATT
GCATTGCGACAGGAGCTGGCACAGTGCGAAGTTGGTATTGCCGTTGCACA
GCTCGTGGATTGCAGCACGCCTCTGGACTTCGCGGCCTCCCAGACACCGA
CAGTCCTATGGACGTTCAATACTGAGACGAATCAGGTCGAACGAAGCTAT
GAGGGTACCCTCGAGGCGGTCAATGAGCGGGCGCAATTGATGGATCGGGC
CATCAGCCGGATGATCATCGGCGACGAGAAGCAGCGGGTCGATGGCCTCA
TCAGCATCAGTGCGGACCCCGAGGCTGTCAATCAATTCACTTTCCTTGCC
GCGGCCAAGGCTAAGATTCCTGTCGTCGGCACTGGTGGCACTTCGTTGGG
TAAAGCCGCGGGCGACTTGGGCTGTGATGTTGTGGGCAACAGCGGCGGGT
CCGTCTCAACAACGATAGAGACGAAAGCCTTGTCGTTCACAGCCAGTCTA
GCCAGCTTCTGGGGCCTTCCCTACGACCCATTGATTTCTTATCCACAGCT
TCACAGTATCCTGGCCGCGTGTCTCCCGGTTTTCGTGGCGGTAGTCCTGG
CCAAGGAAGCTTGGAGGAAGGCTCTGGCGCTGGGTATCTCGGATTGGTGG
CTGGCACGTCAGACTCACGCCACCTTCACAGGGCTGTCGGACATCGCGAA
TGCCTTGCCAGTGGTAGTGGCGGTGGTGACGGCCTCTCAAGTGGGAAGAC
TGGGAGAGGCCGGGCTCTTGTCGGGGGTATTGGCGGGCATGCTCGCCTgt
ggcgcgggagggagcgaggagggtaCCGGGTCTGAGAGCACCGTGCTTGC
CGGAGCCCTTACGGGCTTGTTGGCAGGATGGCTGAGTCGGCAGCTTTTGG
TTGCCACGGCAAAGTCCCTGTGGGTGCCAGCCACGGCATCTTCCATCATA
ACAGCCGGGGCAGCGGGGCTATCTGCTGGGCTGGGGGGTAGATTACTCAT
TCGACGGCCATGCGCCTGGGTCTCGGACACATTCCGAAGCATTCTTCTGT
ACTTGGAAGCTCCTGTGGTCGTGGGAAACGATGCAGGcgggggacgtggt
ggcgTGGCGGGAATCAGCGCCTTTCAGTGGGCGctcgccctggccgtggg
TCCCGGGGTGACCTACGGCTCCCAAAGGGGTCTTTATCACGTCGTACTCC
TCCCGCTCATCCTCTTTGAGATGGAGCGCGGagatccctccttcttgggg
GCGGTGGATTACTGCTCGCTCTGTCTAGTGTCTGCGGGCGTGACGGTGGC
GACCtggctcctgcccctccctcccgaccacCCCAGCAACGGGGGCCGGG
ACCCGCGTCCCCTGGCAAGACGGGGGGCCTACACGAACTTGGTGTGGGGC
GACTTCGTGGAGGCTTGCTATCCACTCGTCCAGCACAGCGTCTTCTTGAC
CGGGGCGGTGTACGCGGCGTCAACCCTGTCTACGGCCGTGCTTctgcagg
aagggggaaggtcgTCCGCTTACATGCCGGCGCCTCTGAGTCTGTGGCTG
GCCTCTCACgtcgaagaaggggagggaagcgcatGGCGAGCTTCGTTGAT
AGCGTTTGGGCTGCCGTTTTCGGCGACGCTGTTGCGGAACGGATGGCATC
GCTTCGGGGGTTGGGAGTAA back to top
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