rna4486, rna4486 (mRNA) Nannochloropsis gaditana

Overview
Namerna4486
Unique Namerna4486
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1893
Alignment locationCM002463.1:710956..711805 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g1.7535.mrna
Orig protein idgnl|cribi|Naga_100025g1.7535
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:710956..711805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g1gene4328Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4486rna4486-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26244.1cds4475Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4486 ID=rna4486|Name=rna4486|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp
ATGATGCTCACCAAGCCTGCCAGCGGCACGAGTAAATCATTAGGGAAGAT
TTTGAACAAGCACCCCACCAAGCGTCATGGGGGGCTAGCCTTTAGTCAGG
GCTCGGGATTCGTCCCATCGGTGGTCGCCGGTCCCAATGACGCGAGCACC
GGGACGGTGGATTGCCTTATGCCGACTGTTGAGCAATTTGTCCGGGCAAG
GGACTATGCGGGGGCCTTGGCCATCTTGGACTTCACGCGCCGTATGGAAA
GGGTCGACGGAGGCTCGACACTAGAGTATTTGCTATGGCGGGCGTACTGC
GCTTTCCATATGGGAGAGTACGAGCAGGCATTGCATACGTATGAAGGCAT
CCTTCGCGGGGAGCACTGGGCGTCGGACGGAGAGGGAAGGGACTTGAAAG
ACAAGAAAACTCAGAGTCCAAACAAAGGCCACTCGCAATGCACGGACGGC
ACGGCAGAAGTAGCAGGCCCTAAGGCAGACACGTCTCTCCCGGAAGTTCA
TTTGTTTCGGGCATGCTGTCACTACTACATGCAGCAGTACGAAGAAGCCG
AGCGCGCCGCCATGCATGGCCCGTTGGAGGAAGGTGGACTGCGCACCCGT
CTTCTCTTCCACATCGCCCACAAGCAAGGGAACGAGACGAAGCTCCTGCA
CTTACATCACCAGCTCAGCGACGGCGTGGAGGACCAGCTCTCTCTGGCTG
CCATCCACTACCTCCGCTCCCACTTCCAAGAGGCCGTCGAGGTCTACAAG
CGGCTCCTCCTCGAGCACAGGGACGACGTGGCCCTGAACGTGTACGTGGC
GCTGTGCTACTACAAGATGGACCATTACGACGTGGTCATGGAGATCCTGG
CGGCCTACCTCCAGGCGCACCCGGGGTCCTTGGTGGCCCTCAATCTGAAA
GCATGCACCACCTACCGGCTCTACAACGGAAAGGCTGCCGAGGCGGAGCT
CCAAAAGGGGCTTGGGGAGGCATATGGCGTGGACTTGCAGGAGCACGCAT
TGCTGAGGCATAATTTGGTGGTATTCAGGGGCGGGGAAGGGGCTCTTCGG
GTCCTTCCCCCCCTGGTCGACGTGATCCCCGAGGCTCGCCTGAACCTGGT
CATCTACTACCTGCGGCACAACGGCACGGAGGAGGCCTTCGAGCTGATGC
GACATTTGGAGCCCAGCACCCCCCAAGAGTACATCCTGAAGGGGATCGTC
AACGCCGGGCGGGGCCTGGCGCTCGGCTCTCGCGAACACTTGAAGACGGC
GCAGCAGCTGTTTCAGCTCGTGGGTGCCTCGGCCAGCGAATGCGACACGA
TCCCCGGGCGGCAGAGCATGGCCTCCTGCTTCTTTTTGCTCAAGAATTTC
GAGGACGTGAACACTTACCTCTCCTCCATTCGGACCTACATGGGCGCGGA
CGATGACTTCCATTGGAACTACGGCATTTCCCTGGCCGCCGTGGGAGACT
ATCAGGCGGCCGAAGAGTCCCTCTTTGCTGTCCGTAACGAAGAATACAAA
GCCGAGCCCGCTTTTCTGGCTTGGCTGTGTCGATGCTGTATTATGAACGG
CAACCCGCATTACGCCTGGGAGCTTTATCTGCAGGCCGACGCGACGGCGG
GGGCCGCAGCGACTTTTGCACTTTTGCAGCTTGTGGCCAATGACTGCTAT
CGGATGGGCCACTTTTTACTGGCGGCCAAGGCCTTCCACGTGCTGGAGCG
CTTGGACCCCGACGATCCTGAGTATTGGGAGGGGAAACGCGGGGCGTGCG
CTGGAGTCCTACAGCTCTGCTTGGCGGGGACGTTGCCCAAGGAGGAGCTA
CAGGAAGCGATGATTTTGCTCCGGGAGGGAAACGTGAACAACCCCCAGGC
GGAATACATGCTGAGGGTCATGAAGAAATACGCTATGGAGTGA
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protein sequence of rna4486

>rna4486-protein ID=rna4486-protein|Name=rna4486|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MPYAPSSAGLPTLIPVSPSRPHSRPPHSRTVSKESMNDATVLYTAVKSLY
DLTGDVKAVFGKHYVPETASFIDPLVTVTHDTKACVGQFRALRGLFSRAE
IKTRSVTRGGNHLVIDWQIKYFPRGLPSPVCLLSAHHHNLDLGDRERGPR
NQHGLDAHLSSRRSLVTPRAPVLRARFVFFLQHVVAPDFWQK
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mRNA from alignment at CM002463.1:710956..711805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4486 ID=rna4486|Name=rna4486|organism=Nannochloropsis gaditana|type=mRNA|length=850bp|location=Sequence derived from alignment at CM002463.1:710956..711805+ (Nannochloropsis gaditana)
CTGGGCATAAAAATAAAGCAGCATCCTCTGAGTGACAGTAATGTGCGATC
TACGCCATGCATCGATTCCTGGACGTACGCTCACTCTTTTTAATTCCGCG
GTATGCTAAATTCGACAAATTTGCAGGCCGCACGACTGGAATACATCAGA
ACGTGGCACGTGAATAAAAATGCCGTACGCTCCCTCTTCGGCAGGGTTGC
CTACGCTAATCCCTGTCTCCCCCTCACGGCCGcattcccgcccccctcac
TCAAGGACTGTTTCCAAGGAGAGCATGAATGATGCGACCGTATTGTACAC
AGCGGTGAAGTCATTGTACGATCTAACGGGAGATGTGAAGGCGGTGTTTG
GAAAGCATTACGTGCCCGAAACCGCATCCTTCATCGATCCCCTGGTCACG
GTCACTCACGATACGAAGGCTTGCGTGGGCCAGTTCCGTGCTTTGCGTGG
GCTTTTCTCCAGGGCAGAAATCAAGACTCGCAGTGTCACCCGTGGAGGGA
ATCATCTAGTCATTGACTGGCAGATAAAATACTTCCCCCGGGGCTTGCCG
TCCCCTGTGTGCCTTCTCTCTGCACACCATCACAATCTTGACCTTGGAGA
CCGAGAGCGAGGCCCCAGAAACCAGCACGGGCTCGATGCGCATCTCTCAT
CACGTCGATCATTGGTCACTCCACGAGCTCCTGTCCTCCGTGCCCGTTTT
GTCTTTTTTCTACAGCACGTTGTGGCGCCCGATTTTTGGCAAAAGTAGCT
CATTTTTGACGAACGCTGTGTGCGACTACTTTGAAGGCCGAAGTGGACGa
ggtgaagacgaaggagaaggcacgaCCCATGGCGCTGACTTCTTTGGGGG
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Coding sequence (CDS) from alignment at CM002463.1:710956..711805+

>rna4486 ID=rna4486|Name=rna4486|organism=Nannochloropsis gaditana|type=CDS|length=579bp|location=Sequence derived from alignment at CM002463.1:710956..711805+ (Nannochloropsis gaditana)
ATGCCGTACGCTCCCTCTTCGGCAGGGTTGCCTACGCTAATCCCTGTCTC
CCCCTCACGGCCGcattcccgcccccctcacTCAAGGACTGTTTCCAAGG
AGAGCATGAATGATGCGACCGTATTGTACACAGCGGTGAAGTCATTGTAC
GATCTAACGGGAGATGTGAAGGCGGTGTTTGGAAAGCATTACGTGCCCGA
AACCGCATCCTTCATCGATCCCCTGGTCACGGTCACTCACGATACGAAGG
CTTGCGTGGGCCAGTTCCGTGCTTTGCGTGGGCTTTTCTCCAGGGCAGAA
ATCAAGACTCGCAGTGTCACCCGTGGAGGGAATCATCTAGTCATTGACTG
GCAGATAAAATACTTCCCCCGGGGCTTGCCGTCCCCTGTGTGCCTTCTCT
CTGCACACCATCACAATCTTGACCTTGGAGACCGAGAGCGAGGCCCCAGA
AACCAGCACGGGCTCGATGCGCATCTCTCATCACGTCGATCATTGGTCAC
TCCACGAGCTCCTGTCCTCCGTGCCCGTTTTGTCTTTTTTCTACAGCACG
TTGTGGCGCCCGATTTTTGGCAAAAGTAG
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Synonyms
Publications