rna4485, rna4485 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4485
Unique Name	rna4485
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1746
Alignment location	CM002463.1:708677..710569 -

Link to JBrowse

Properties


Property Name	Value
Product	tetratricopeptide repeat protein 26
Orig transcript id	gnl\|cribi\|Naga_100025g2.7505.mrna
Orig protein id	gnl\|cribi\|Naga_100025g2.7505
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:708677..710569 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g2	gene4327	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26214.1	cds4474	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4485	rna4485-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:708677..710569-
coding sequence from alignment at CM002463.1:708677..710569-

mRNA sequence

>rna4485 ID=rna4485|Name=rna4485|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp
ATGCACCCTGCTTACGCGCGTGGAAACCGGCGCGCTGTCCCGCTCCACGC
CACTGAGTGTCAAATAGTGGTTTCGAATCCTGTTGTCATGTCGACTCCGG
CTGATAAAGAAGTCCAGCGGAAGAAAGCGTACAAGAAAGGCATTGACTCG
GACGATGCACGTCGACGTCGAGAAGAAACGCAAATCCAAATCCGAAAGAA
CAAGCGGGAGGAGTCACTAAACCAACGCCGACGCACGGATGACTTGGGAA
ACGCACTCGGTGTAAACAATGCGGGCGCGGGGGGGGGAAGCGCGGCTTTA
GATATGGCTCAGCGCCTGAAAGAAGTGCCAGCCATGGTTGCGGGGGTGTC
ATCGATGGATCCGGCCGTGCAATTAGAAGCCACCACGCAGTTTCGCAAAC
TGCTGTCCATAGAGAAGAATCCACCGATTCAACACGTCATAAATGCAGGA
GTAGTGCCGCGGCTTGTGGAATTCTTGCAGCGGCAGGAGAATCCCCCCTT
GCAATTTGAAGCGGCCTGGGCCTTGACCAACATTGCCTCTGGGACCTCAG
AGCACACCAAAGTAGTGATCTCTGAGGGCGCCGTACCCATCTTCGTCCAG
CTTTTGAGCTCTCCCAATGACGACGTCCGCGAACAGGCGGTCTGGGCCCT
TGGGAACATAGCGGGCGACTCGCCCCAATGCAGAGACCTGGTGTTGGGGC
AGCACGCCTTGCTCCCCCTCCTCCAGCAGCTGCATGTGAATTCCAAGCTA
ACCATGCTTCGAAACGCGACCTGGACTCTGTCCAACTTTTGTCGAGGAAA
GCCCCAGCCTGACTTCGAGGTGGTCAAGGCGGCGCTTCCCACCCTGGCGC
AGCTTATCTACTCTCCCGATGAGGAGGTGCTGACCGATGCCTGCTGGGCC
CTGTCCTACCTCTCGGACGGCCCGAACGAGAAGATCCAGGCCGTGATCGA
AGCCGGGGTCTGCAAGCGCTTGATTGAGCTCCTCATGCACCCCTCGTACA
CCATCCAAACGCCCGCGCTCAGGACGGTGGGCAACATCGTGACGGGAGAC
GACCTGCAAACGCAGATCATCATTGGCTACCATGCCCTGCCCTGCCTCCT
CGCCTTGCTCAACCACATGAAGAAGACGATCAAGAAAGAGGCATGCTGGA
CCGTCTCCAACATCACGGCCGGCAACAAGGACCAGATCCAGGCTGTGATC
GACCAGGGGATGATTCGCCCCTTGATCGGGCTTCTGGAAACAGCCGACTT
CGATGTGAAGAAGGAGGCGGCCTGGGCGCTTTCCAATGCCACCTCCGGTG
GAACGGCGGAGCAGATCAAACATTTGGTGGAGCAAGGCTGCATCAAGCCG
CTCTGTGACCTGCTGGTGACCGACGACAACAAGATCATCTCCGTGGCGCT
TGAGGGCTTGGAGAACATCTTGAAGGTCGGAGAGCGGGAAAACAAAATGG
TTGGTGCGGAGTACAATGAAATGGCCGCCCTGGTTGCTGAGCTGGGTGGA
TTGCAGAAGCTGGAGGAGCTTCAGAACCATTCTTCGGAGCAACTGTACGA
AAAGTCGGTGAGCCTGATTGAACGGTTCTTTGGAGTGGAGGAAGAGGCAG
TGGAGGGAGGGGTTGCATCGCAGGCACCGCAACCGAATGGCACTTTCTCC
TTCTCGACGGGGGAGATGGGTGGAGGACCGGGCGCCGGTGGAGGTGTGGG
CGGCGGTGTCCAGCCACCCGGCAGCTTTAATTTCAACATGGGTTAG

protein sequence of rna4485

>rna4485-protein ID=rna4485-protein|Name=rna4485|organism=Nannochloropsis gaditana|type=polypeptide|length=630bp
MMLTKPASGTSKSLGKILNKHPTKRHGGLAFSQGSGFVPSVVAGPNDAST
GTVDCLMPTVEQFVRARDYAGALAILDFTRRMERVDGGSTLEYLLWRAYC
AFHMGEYEQALHTYEGILRGEHWASDGEGRDLKDKKTQSPNKGHSQCTDG
TAEVAGPKADTSLPEVHLFRACCHYYMQQYEEAERAAMHGPLEEGGLRTR
LLFHIAHKQGNETKLLHLHHQLSDGVEDQLSLAAIHYLRSHFQEAVEVYK
RLLLEHRDDVALNVYVALCYYKMDHYDVVMEILAAYLQAHPGSLVALNLK
ACTTYRLYNGKAAEAELQKGLGEAYGVDLQEHALLRHNLVVFRGGEGALR
VLPPLVDVIPEARLNLVIYYLRHNGTEEAFELMRHLEPSTPQEYILKGIV
NAGRGLALGSREHLKTAQQLFQLVGASASECDTIPGRQSMASCFFLLKNF
EDVNTYLSSIRTYMGADDDFHWNYGISLAAVGDYQAAEESLFAVRNEEYK
AEPAFLAWLCRCCIMNGNPHYAWELYLQADATAGAAATFALLQLVANDCY
RMGHFLLAAKAFHVLERLDPDDPEYWEGKRGACAGVLQLCLAGTLPKEEL
QEAMILLREGNVNNPQAEYMLRVMKKYAME

mRNA from alignment at CM002463.1:708677..710569-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4485 ID=rna4485|Name=rna4485|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp|location=Sequence derived from alignment at CM002463.1:708677..710569- (Nannochloropsis gaditana)
ATGATGCTCACCAAGCCTGCCAGCGGCACGAGTAAATCATTAGGGAAGAT
TTTGAACAAGCACCCCACCAAGCGTCATGGGGGGCTAGCCTTTAGTCAGG
GCTCGGGATTCGTCCCATCGGTGGTCGCCGGTCCCAATGACGCGAGCACC
GGGACGGTGGATTGCCTTATGCCGACTGTTGAGCAATTTGTCCGGGCAAG
GGACTATGCGGGGGCCTTGGCCATCTTGGACTTCACGCGCCGTATGGAAA
GGGTCGACGGAGGCTCGACACTAGAGTATTTGCTATGGCGGGCGTACTGC
GCTTTCCATATGGGAGAGTACGAGCAGGCATTGCATACGTATGAAGGCAT
CCTTCGCGGGGAGCACTGGGCGTCGGACGGAGAGGGAAGGGACTTGAAAG
ACAAGAAAACTCAGAGTCCAAACAAAGGCCACTCGCAATGCACGGACGGC
ACGGCAGAAGTAGCAGGCCCTAAGGCAGACACGTCTCTCCCGGAAGTTCA
TTTGTTTCGGGCATGCTGTCACTACTACATGCAGCAGTACGAAGAAGCCG
AGCGCGCCGCCATGCATGGCCCGTTGGAGGAAGGTGGACTGCGCACCCGT
CTTCTCTTCCACATCGCCCACAAGCAAGGGAACGAGACGAAGCTCCTGCA
CTTACATCACCAGCTCAGCGACGGCGTGGAGGACCAGCTCTCTCTGGCTG
CCATCCACTACCTCCGCTCCCACTTCCAAGAGGCCGTCGAGGTCTACAAG
CGGCTCCTCCTCGAGCACAGGGACGACGTGGCCCTGAACGTGTACGTGGC
GCTGTGCTACTACAAGATGGACCATTACGACGTGGTCATGGAGATCCTGG
CGGCCTACCTCCAGGCGCACCCGGGGTCCTTGGTGGCCCTCAATCTGAAA
GCATGCACCACCTACCGGCTCTACAACGGAAAGGCTGCCGAGGCGGAGCT
CCAAAAGGGGCTTGGGGAGGCATATGGCGTGGACTTGCAGGAGCACGCAT
TGCTGAGGCATAATTTGGTGGTATTCAGGGGCGGGGAAGGGGCTCTTCGG
GTCCTTCCCCCCCTGGTCGACGTGATCCCCGAGGCTCGCCTGAACCTGGT
CATCTACTACCTGCGGCACAACGGCACGGAGGAGGCCTTCGAGCTGATGC
GACATTTGGAGCCCAGCACCCCCCAAGAGTACATCCTGAAGGGGATCGTC
AACGCCGGGCGGGGCCTGGCGCTCGGCTCTCGCGAACACTTGAAGACGGC
GCAGCAGCTGTTTCAGCTCGTGGGTGCCTCGGCCAGCGAATGCGACACGA
TCCCCGGGCGGCAGAGCATGGCCTCCTGCTTCTTTTTGCTCAAGAATTTC
GAGGACGTGAACACTTACCTCTCCTCCATTCGGACCTACATGGGCGCGGA
CGATGACTTCCATTGGAACTACGGCATTTCCCTGGCCGCCGTGGGAGACT
ATCAGGCGGCCGAAGAGTCCCTCTTTGCTGTCCGTAACGAAGAATACAAA
GCCGAGCCCGCTTTTCTGGCTTGGCTGTGTCGATGCTGTATTATGAACGG
CAACCCGCATTACGCCTGGGAGCTTTATCTGCAGGCCGACGCGACGGCGG
GGGCCGCAGCGACTTTTGCACTTTTGCAGCTTGTGGCCAATGACTGCTAT
CGGATGGGCCACTTTTTACTGGCGGCCAAGGCCTTCCACGTGCTGGAGCG
CTTGGACCCCGACGATCCTGAGTATTGGGAGGGGAAACGCGGGGCGTGCG
CTGGAGTCCTACAGCTCTGCTTGGCGGGGACGTTGCCCAAGGAGGAGCTA
CAGGAAGCGATGATTTTGCTCCGGGAGGGAAACGTGAACAACCCCCAGGC
GGAATACATGCTGAGGGTCATGAAGAAATACGCTATGGAGTGA

Coding sequence (CDS) from alignment at CM002463.1:708677..710569-

>rna4485 ID=rna4485|Name=rna4485|organism=Nannochloropsis gaditana|type=CDS|length=1893bp|location=Sequence derived from alignment at CM002463.1:708677..710569- (Nannochloropsis gaditana)
ATGATGCTCACCAAGCCTGCCAGCGGCACGAGTAAATCATTAGGGAAGAT
TTTGAACAAGCACCCCACCAAGCGTCATGGGGGGCTAGCCTTTAGTCAGG
GCTCGGGATTCGTCCCATCGGTGGTCGCCGGTCCCAATGACGCGAGCACC
GGGACGGTGGATTGCCTTATGCCGACTGTTGAGCAATTTGTCCGGGCAAG
GGACTATGCGGGGGCCTTGGCCATCTTGGACTTCACGCGCCGTATGGAAA
GGGTCGACGGAGGCTCGACACTAGAGTATTTGCTATGGCGGGCGTACTGC
GCTTTCCATATGGGAGAGTACGAGCAGGCATTGCATACGTATGAAGGCAT
CCTTCGCGGGGAGCACTGGGCGTCGGACGGAGAGGGAAGGGACTTGAAAG
ACAAGAAAACTCAGAGTCCAAACAAAGGCCACTCGCAATGCACGGACGGC
ACGGCAGAAGTAGCAGGCCCTAAGGCAGACACGTCTCTCCCGGAAGTTCA
TTTGTTTCGGGCATGCTGTCACTACTACATGCAGCAGTACGAAGAAGCCG
AGCGCGCCGCCATGCATGGCCCGTTGGAGGAAGGTGGACTGCGCACCCGT
CTTCTCTTCCACATCGCCCACAAGCAAGGGAACGAGACGAAGCTCCTGCA
CTTACATCACCAGCTCAGCGACGGCGTGGAGGACCAGCTCTCTCTGGCTG
CCATCCACTACCTCCGCTCCCACTTCCAAGAGGCCGTCGAGGTCTACAAG
CGGCTCCTCCTCGAGCACAGGGACGACGTGGCCCTGAACGTGTACGTGGC
GCTGTGCTACTACAAGATGGACCATTACGACGTGGTCATGGAGATCCTGG
CGGCCTACCTCCAGGCGCACCCGGGGTCCTTGGTGGCCCTCAATCTGAAA
GCATGCACCACCTACCGGCTCTACAACGGAAAGGCTGCCGAGGCGGAGCT
CCAAAAGGGGCTTGGGGAGGCATATGGCGTGGACTTGCAGGAGCACGCAT
TGCTGAGGCATAATTTGGTGGTATTCAGGGGCGGGGAAGGGGCTCTTCGG
GTCCTTCCCCCCCTGGTCGACGTGATCCCCGAGGCTCGCCTGAACCTGGT
CATCTACTACCTGCGGCACAACGGCACGGAGGAGGCCTTCGAGCTGATGC
GACATTTGGAGCCCAGCACCCCCCAAGAGTACATCCTGAAGGGGATCGTC
AACGCCGGGCGGGGCCTGGCGCTCGGCTCTCGCGAACACTTGAAGACGGC
GCAGCAGCTGTTTCAGCTCGTGGGTGCCTCGGCCAGCGAATGCGACACGA
TCCCCGGGCGGCAGAGCATGGCCTCCTGCTTCTTTTTGCTCAAGAATTTC
GAGGACGTGAACACTTACCTCTCCTCCATTCGGACCTACATGGGCGCGGA
CGATGACTTCCATTGGAACTACGGCATTTCCCTGGCCGCCGTGGGAGACT
ATCAGGCGGCCGAAGAGTCCCTCTTTGCTGTCCGTAACGAAGAATACAAA
GCCGAGCCCGCTTTTCTGGCTTGGCTGTGTCGATGCTGTATTATGAACGG
CAACCCGCATTACGCCTGGGAGCTTTATCTGCAGGCCGACGCGACGGCGG
GGGCCGCAGCGACTTTTGCACTTTTGCAGCTTGTGGCCAATGACTGCTAT
CGGATGGGCCACTTTTTACTGGCGGCCAAGGCCTTCCACGTGCTGGAGCG
CTTGGACCCCGACGATCCTGAGTATTGGGAGGGGAAACGCGGGGCGTGCG
CTGGAGTCCTACAGCTCTGCTTGGCGGGGACGTTGCCCAAGGAGGAGCTA
CAGGAAGCGATGATTTTGCTCCGGGAGGGAAACGTGAACAACCCCCAGGC
GGAATACATGCTGAGGGTCATGAAGAAATACGCTATGGAGTGA

Synonyms

Publications