rna4463, rna4463 (mRNA) Nannochloropsis gaditana

Overview
Namerna4463
Unique Namerna4463
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1840
Alignment locationCM002463.1:649537..650689 -

Link to JBrowse

Properties
Property NameValue
ProductAcyl-CoA N-acyltransferase
Orig transcript idgnl|cribi|Naga_100025g26.7509.mrna
Orig protein idgnl|cribi|Naga_100025g26.7509
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:649537..650689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g26gene4305Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4463rna4463-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26218.1cds4452Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4463 ID=rna4463|Name=rna4463|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp
TTGTGTTGGCCACTGCTAGCTTTATCAGCCGCTCCAAGCGAGCTCGCCAG
ATGGTCCATCGTGGCCGTGTCGATCCAATGGTGTTGGTAGAGGTTATTGA
GGGTGTGGGTTCCGCAACAGAGCCGACGCTGGGTTTCGTGGTAGGAGGGT
CCATTCGCCATCACTCTCACTGACATCACAAGAAGAATATAATGGGAATA
GGACCAAAGTGTCGGGTTGAGATACCGCCACTTCACCGCGACTTCATTTG
CACAGGCATGCTCACACGGCACTCGGGGGGAGCAAGCCAAATTACACTGC
GAATGCACGCCCAAGCTGTCGTTGTCTGAGGACAAGGACCACGAATTTTG
CGACTAAATGGAGACTCACAGGGGTATGCTGGCCATAAGGGCTGTGCCAC
CTGCATGCACTATGATGTCGCCTTCACTTTTGGAGGTGGACAGGCACTAG
GGCAAGCTGGGGGATCCGAAAAAGACTCTCAGAGGGCCCCCACGACGTCC
CGTCCCTTGCTGTCATGCACATGCACGACGAAGGACGGCACCCACAGCTG
CTGTTGACCCTCCCTTTCTCTTGGTACGCTTGACTTTGCATCGGAGAAAT
AAAATTTTGCTTACATGCATTTTGCTCTTGCCCTCGCTTCACGAGCACAC
TATAGGCAGGACAGCTCCTCGCCCTGCATGACTATAAACCGCGCGCACCT
AGGAATGGCATGAAAATCTTGTCAGAGGGCTGGGTTGAATATTTCCACGA
CGTGCATGTCTGCTCGAGGGAGGCAAAAACCAGCAAGAGCACAGCGGACT
TGGTCATGTCATCGTCGCTCCACTCGCGGAGCTCGCCATTTCTTGTGACG
GCTCCGTGTGGAAATACATGACACTCCCCTCGTCTATTCGCCCCGCTAGA
ACCACGTCTACTATGGCACACTACATGTCGATGGACCTCTAGCGTTCGTG
TCTTCCTAAGTAAGTTATAAAACAGGACGGTTCGACGAGCGCTCATTTCC
GCCATGATACTTCTTTTCTTCCCTCCCTTATCCCCCTTACGATTAAAATA
CAGAGGGGTAGCCCGCTTGGACACACAAGCATGAGATTTTCCGGCTTATT
TTTGGCTTTGTTGCTGACATGCGCAAGCACTGCTCTTGCTTTTGTTGTCC
GTCCAGCTTATCAGGTCTCACAATTACGCCGAATTCGCGGTGTTATGACA
GCAGGGCTCTTCGACGGTCTATTTCTGTCGGATAGTGAAAAGGAGGAGGC
GTATCAGAAGCAACAAGAAATTTTGCGGGCTCGCCAGAACCCAGACAAAC
AGAAAGCATACTTCCAAGAGGTAAACAAACGGCGGGCAGAGGCCAACAAG
AACTACAAGGAAAAGTTCAACCTTTCCAAGAACGGGAAGCAAGACCCGGC
CATCAAATGGATGGAGCTAAGAAAGAAAGGAGTGATTGGGGAGAGGGAGA
AATACGAGCAATACGGGGAGACCAACCGCGGCATCATCATTCCTCAGGTG
CCGTTCGGGAACACCAAATACGACGAGGGGGAGCGCTTCGACCTCCGCTT
GCCGTACGTGGACGATGGCTACGTGGATGAGTCGGCCAGCCTGGGGAACA
CGATCAAGCGCCTGTTCGGCTTCGGTAAAGCCTCCAAACCCACCATGCTC
CCACAGGGGCTGGACTCGGACGGCCCCAATAGTAAGAAAGGGGCGAAGGG
CGGGAATAAGAAGTAATGCGAGGATTTCCGGAATCCCATGCCTGCGGCCA
CTGAACAAACTGGTTGATGCATTAATTGTCTTTTCCTGGTGCATATTGAC
GACAAAAGAATAAACTGGAGCGCGCAGTGCAAGATAAGGA
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protein sequence of rna4463

>rna4463-protein ID=rna4463-protein|Name=rna4463|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MSPRPHPLTSVLFLVLVFLTPGVTQGFSPSLRPRIERGLKTSIAALPFST
DPAPLSGKEPLVTQAEIEACAAAFGIQLRLSTLGPFYRIIARLTNDKEGV
EPIGYTSGFVAPFFKLVHLDTMQVRRRYWKQLDGSNRFPYGCGLLLGAAA
MRYAYDKGCSKAELLAINDDEKSHRLLLGFYRTAGFVSVKEVTNDLRCVP
DLLVWGGVGTRMDMPVEEYLRRWRTVIVSRGEEFLNRR
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mRNA from alignment at CM002463.1:649537..650689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4463 ID=rna4463|Name=rna4463|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp|location=Sequence derived from alignment at CM002463.1:649537..650689- (Nannochloropsis gaditana)
GCAGGAGGTTATCTCATCTAATTTCCTAGTCTTTCCTTTATGGAGACAGG
GTCTATCCATGGTGACGCTAGTTGGCCTCATTATTACTACGTAGCTATAC
ACCTTTGAGGAGGCAATTTTACACGCTCTTCATTTGCCCATTGCGTGGTA
TCATGAGCCCACGACCCCATCCCCTCACGAGCGTGCTCTTTCTCGTCCTC
GTCTTCCTCACACCGGGAGTCACCCAGGGGTTCTCTCCATCTCTTCGCCC
ACGGATAGAACGAGGCCTGAAGACATCAATCGCGGCGCTGCCTTTTTCCA
CCGACCCCGCTCCCTTGTCTGGAAAGGAGCCCCTTGTGACCCAGGCTGAA
ATTGAAGCTTGTGCGGCCGCCTTTGGAATCCAGCTTCGACTCTCTACTCT
AGGCCCATTCTACCGCATAATCGCGCGCTTGACAAACGACAAAGAAGGAG
TTGAGCCCATAGGATATACTTCAGGCTTTGTTGCACCCTTCTTCAAGCTT
GTACATTTAGATACCATGCAGGTAGGGTGCAAGTTGACCGGAGCCTATGG
TAATGCGCGCACTCCAATGGACGACATGATGCGAAAGAATTCCTTCCGCA
TGGACAGTCCTTATGTCATATTCTGCGCTCACCTGCTCCCTCACAATCAC
AAGGTGCGCCGTCGCTACTGGAAGCAGCTGGATGGCAGCAACAGATTTCC
CTACGGTTGTGGGCTCCTCTTGGGGGCCGCTGCAATGCGGTATGCGTACG
ACAAGGGCTGCAGTAAAGCCGAGCTCCTGGCAATCAATGACGACGAAAAG
AGCCATCGCCTGCTCCTGGGCTTCTACCGCACTGCGGGCTTTGTGAGCGT
GAAGGAGGTGACCAATGACCTGCGGTGCGTGCCAGACCTGCTAGTGTGGG
GCGGGGTGGGTACGCGAATGGACATGCCGGTGGAGGAATATTTGCGCCGG
TGGCGGACGGTGATCGTGAGTCGGGGGGAGGAGTTTCTCAACAGGAGATA
AGGCATTGCGTCACGCAGTATAAGGCCAGAAAAATAGGAATACAAAACTA
TGTTTCACGTCCGAGAATCCTTATCTTGCACTGCGCGCTCCAGTTTATTC
TTTTGTCGTCAATATGCACCAGGAAAAGACAATTAATGCATCAACCAGTT
TGT
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Coding sequence (CDS) from alignment at CM002463.1:649537..650689-

>rna4463 ID=rna4463|Name=rna4463|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at CM002463.1:649537..650689- (Nannochloropsis gaditana)
GTGCGCCGTCGCTACTGGAAGCAGCTGGATGGCAGCAACAGATTTCCCTA
CGGTTGTGGGCTCCTCTTGGGGGCCGCTGCAATGCGGTATGCGTACGACA
AGGGCTGCAGTAAAGCCGAGCTCCTGGCAATCAATGACGACGAAAAGAGC
CATCGCCTGCTCCTGGGCTTCTACCGCACTGCGGGCTTTGTGAGCGTGAA
GGAGGTGACCAATGACCTGCGGTGCGTGCCAGACCTGCTAGTGTGGGGCG
GGGTGGGTACGCGAATGGACATGCCGGTGGAGGAATATTTGCGCCGGTGG
CGGACGGTGATCGTGAGTCGGGGGGAGGAGTTTCTCAACAGGAGATAAAT
GAGCCCACGACCCCATCCCCTCACGAGCGTGCTCTTTCTCGTCCTCGTCT
TCCTCACACCGGGAGTCACCCAGGGGTTCTCTCCATCTCTTCGCCCACGG
ATAGAACGAGGCCTGAAGACATCAATCGCGGCGCTGCCTTTTTCCACCGA
CCCCGCTCCCTTGTCTGGAAAGGAGCCCCTTGTGACCCAGGCTGAAATTG
AAGCTTGTGCGGCCGCCTTTGGAATCCAGCTTCGACTCTCTACTCTAGGC
CCATTCTACCGCATAATCGCGCGCTTGACAAACGACAAAGAAGGAGTTGA
GCCCATAGGATATACTTCAGGCTTTGTTGCACCCTTCTTCAAGCTTGTAC
ATTTAGATACCATGCAGGTGCGCCGTCGCTACTGGAAGCAGCTGGATGGC
AGCAACAGATTTCCCTACGGTTGTGGGCTCCTCTTGGGGGCCGCTGCAAT
GCGGTATGCGTACGACAAGGGCTGCAGTAAAGCCGAGCTCCTGGCAATCA
ATGACGACGAAAAGAGCCATCGCCTGCTCCTGGGCTTCTACCGCACTGCG
GGCTTTGTGAGCGTGAAGGAGGTGACCAATGACCTGCGGTGCGTGCCAGA
CCTGCTAGTGTGGGGCGGGGTGGGTACGCGAATGGACATGCCGGTGGAGG
AATATTTGCGCCGGTGGCGGACGGTGATCGTGAGTCGGGGGGAGGAGTTT
CTCAACAGGAGATAAATGAGCCCACGACCCCATCCCCTCACGAGCGTGCT
CTTTCTCGTCCTCGTCTTCCTCACACCGGGAGTCACCCAGGGGTTCTCTC
CATCTCTTCGCCCACGGATAGAACGAGGCCTGAAGACATCAATCGCGGCG
CTGCCTTTTTCCACCGACCCCGCTCCCTTGTCTGGAAAGGAGCCCCTTGT
GACCCAGGCTGAAATTGAAGCTTGTGCGGCCGCCTTTGGAATCCAGCTTC
GACTCTCTACTCTAGGCCCATTCTACCGCATAATCGCGCGCTTGACAAAC
GACAAAGAAGGAGTTGAGCCCATAGGATATACTTCAGGCTTTGTTGCACC
CTTCTTCAAGCTTGTACATTTAGATACCATGCAG
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Synonyms
Publications