rna4459, rna4459 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4459
Unique Name	rna4459
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1540
Alignment location	CM002463.1:640439..642281 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosome maturation factor rimp
Orig transcript id	gnl\|cribi\|Naga_100025g31.7498.mrna
Orig protein id	gnl\|cribi\|Naga_100025g31.7498
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:640439..642281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g31	gene4301	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4459	rna4459-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26207.1	cds4448	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:640439..642281+
coding sequence from alignment at CM002463.1:640439..642281+

mRNA sequence

>rna4459 ID=rna4459|Name=rna4459|organism=Nannochloropsis gaditana|type=mRNA|length=1540bp
TATCAGCATGGCGCATAATCTCTAAGTCTACAACGATTTTGGGGCATGTG
GTCAGTGTGTGTCAGCTGCTCATATTTTTAGGGCACTGTTGTGTTAGTTT
GCCGCCTCATTCGATACGATCTGCACACTGAAAAAAGTCAACACCACGAC
CGACAATAACAGGTTGAAATTTACTGCAAAGTATGCGACTATATGTCCGA
TACGTCCACAGTGGTTTTGGTAATGTGTGGCCTTCCTGCTGCAGGGAAAA
GTTATTGGGGATGCCGTCTGCAAGACTCTGCGTCCTCACGCTATCCGGGT
AAAGAGTGTGAAGTGCAACGCATTGAGTTTGATGCTATCGAGGCTCGTCT
TCGCGAGGAAGATGAAGGACTACATCCTATAGCAGTATGGCATCGTGCGC
GAAGCAAAGCCTTGGCACAAGCTGAAAGTATTTTACACCAAGAGAGGGGT
AGCTCTACACCTGTTGGACTGTCGAAGCCCTCTCGTCGGATTTTGATACT
AGATGACAATATGTACTATGCGAGCATGCGCCGGAAAGTCTATTTAATGG
CTGCCCGTAACGGTGCAGGCTACGGGTGCGTCCACGTAGACATTTCCGTT
GAGGACGCCTTGTCGCAGAACATGAAACGACCTTTGAGGCAGAGAGTTGA
TGAGAAGGTCATCAGGCGTATGAATGCCAGATTGGAGGCCCCAAATAAAT
CCACTCGCAGGTGGGAGACGAACACACTTGTGATTGAACGGCAGGAAGAA
GAGGTTGGGGCGCGTACCTTGGATAAAATCTGGTCTGTAGTAGAGCGTGG
GTGGGAGGCTCCTGCCTTCATTCCTAAGTCCTGCTTTGAGGAAGAAGCGA
AAAAAGAAAGGGATCGGCAGAAGGTACGTGAAAGTGTGGTTCACACGGCT
GAATTGGCGCTACGTCGGGTCATCGGCACCGCGATGCTCTTGGCCGGGAC
TGATGTGCGGCTGTCAGGTACTCTCTCTAGTCTTGGGCGAGGGTTTCAGG
TAGCGAAAACAGAGGTCATGAAGAGGTTTCGAGAGAAAAGTGCTTTCTTT
GTGACACAGGATACGCTTGAAAAGCGAGACGTGGAGCTACTTACCAAGTC
TTTGTTTGCTGCCATACGCGGCGAGTTTGGAAACGATGAAAAAACGTGGT
CTGAATTAGAGAAAAAGACACTAAAGATACTTGGGGAAAAAATAACAATT
GACCCATGAGTTCACAATAGCGGCCGTGACATGCTCTTAAATATTGTCTT
TTGCGTGCAAAGCTATGAGATTATGTGTGTACGTGTATCGATATCTATGC
GGCTTCGGGATGTGGAGATATAAGCTTGCATCAAATTCTTCATAGTCTTA
GGCTTTTACAATTAGAAATGGCTGCATATCGAGGAGAGAAATACTAAAAG
ATGTTTTCCAATGTAGGAAAGTAAGCTCTCAACTGGGCTTGGCTCTTCAA
ACGGAAATGTTGAAGTGCCTGAGGAGTAGATCAAGCTTTGCTTCGATGCG
CTCGAGGCGTGCGTCTTCTGACAGACCACTTGGCGTGGTG

protein sequence of rna4459

>rna4459-protein ID=rna4459-protein|Name=rna4459|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
MSTHDHPSHPPSRLSNCPPPFSAAALFFSFKMVGWSNCLTLTLGLASSVH
AFVPAAHLKAICGNPVLHKDYATTTHPHVCTCPARAHSPGNVDGLQSTPG
ARRRVEALVLMARGRRGRGGGGWQRRRRQDANPIEFDKYGFPIPPQKPAK
ELEEEHREWMESIEPPEGFPEFDAAKEGFSPEEMENDPLLDPAVAVTTAE
TGAATVIDVTASEEGAGQENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAE
DVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLS
SDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAF
RGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMV
VEVRLPSAMHEADDFEVMEEGWANLFVDGKVPSTVSVEYEMPGLTTLGKG
VKMVEPEYYVPPSLPDEDGEEGEGEEYVGGEEDEA

mRNA from alignment at CM002463.1:640439..642281+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4459 ID=rna4459|Name=rna4459|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002463.1:640439..642281+ (Nannochloropsis gaditana)
GATTATTTTGTGGCAGTCGCGGTAGGAGTGTATTCCACTGTCGGTGATGG
GAACCATGTCAAGAAAAGGCATCGCAGCCAGCCAGCCCACTAGCCTGTTG
CAGTTGCCGCAGCAACTGCCATATAAAGTTGAAATCGTTGTTTCCCGCTA
TCTTCCTCGTGAAACTTGCATTTTGTTTGTATAATAAAATAAAAGAGGAG
CGATTCTTTTCGGCTGAGTGCATTATCTCCACCATGCATGTCTACGCATG
ATCATCCATCTCACCCACCGAGTCGACTATCTaattgccccccccccttc
tcagcTGCAGCCttgtttttttccttcaagATGGTTGGCTGGAGCAATTG
TCTTACATTGACTTTAGGTCTGGCCTCGAGTGTACATGCCTTCGTACCAG
CTGCGCATTTAAAGGCCATTTGCGGAAATCCTGTGCTGCACAAGGACTAT
GCAACGACCACCCACCCGCACGTTTGCACGTGCCCCGCTCGTGCGCACTC
TCCGGGCAATGTTGATGGGCTACAATCAACTCCAGGAGCGCGTAGAAGAG
TGGAGGCATTGGTGCTCATGGCCCGGGGCAgacggggacgtggaggtggg
ggatggCAGCGGCGCAGGAGGCAAGATGCTAATCCGATTGAATTTGACAA
GTATGGATTCCCTATCCCGCCCCAGAAGCCCGCAAAGgaactggaggagg
agcatcgTGAGTGGATGGAGTCAATAGAGCCTCCAGAAGGCTTTCCAGAA
TTTGACGCGGCCAAAGAGGGATTCTCaccggaggaaatggaaaatgaTCC
TTTGTTGGACCCGGCCGTTGCTGTTACGACGGCAGAGACCGGAGCGGCGA
CCGTGATCGACGTGACAGCAAgcgaagagggggcggggcaggagaaCGAG
CCAGACTGGGACAACATTCCTGAGTACGGTGGTGAGTTTCTGGGCATGGA
CGACCCCCTCGATGCCCCGTGGCGGTTGCATGCCGAGGATGTGATTCGGG
GGGCCGTGACCGAGGCCGGCTACCACACCTACGACGTGACATGGCACCTA
CACCATGTGAACGTGGACATTACCAGGCAGGACGTCGGCAACGTAGaaaa
tgagggggagggagtggcggACGCAGGGTCTTTATCCTCGGACGAGATAG
TGGAGGTGACGCGTGCCGTTGAAGAGGCACTCTTGCCGCACGACAACCAC
CTGCGAATCCTGCAGCGCTTTCACTTGTGCGTGGGCACGCCGGGAGCCAA
GGACGTGCTGACCACCGAGAGAGAGTTTCAGGCATTTCGGGGCTACGAGG
TCCAGGTGTCTGTCACGAACCCGATCAATGAGAGCCCCACACCCAACGTG
CGCGTGGGCCGCTTGCTGGAGCGCAACCCCATGCACACGATTTTGAACGT
CAAGGGGAAGAACGTGACGATACCAACCGGGATGGTCGTAGAGGTGCGCC
TGCCATCGGCCATGCACGAGGCGGACGACTtcgaggtgatggaggagggg
tgggcgaACCTGTTTGTGGACGGAAAGGTGCCGAGCACCGTGAGCGTCGA
GTATGAGATGCCGGGGCTGACGACTCTGGGCAAGGGGGTGAAGATGGTGG
AGCCCGAGTACTAcgtgccgccctccctcccggacgaggacggggaggaa
ggggagggagaggagtacgtgggtggtgaggaggacgaggcctgAGGTAA
AGGGGGTTTCCCTGTTTGGTTtatagggagggaagacctACTGAGGAAGG
TTAATCGACTTAGCAGGATAGAAGGGAAGCATGCAATACCGGCCATGCGC
CGCCCGCACAAAGTAAACAGTGTGTCCGATCAGCCATGTGGAA

Coding sequence (CDS) from alignment at CM002463.1:640439..642281+

>rna4459 ID=rna4459|Name=rna4459|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002463.1:640439..642281+ (Nannochloropsis gaditana)
ATGTCTACGCATGATCATCCATCTCACCCACCGAGTCGACTATCTaattg
ccccccccccttctcagcTGCAGCCttgtttttttccttcaagATGGTTG
GCTGGAGCAATTGTCTTACATTGACTTTAGGTCTGGCCTCGAGTGTACAT
GCCTTCGTACCAGCTGCGCATTTAAAGGCCATTTGCGGAAATCCTGTGCT
GCACAAGGACTATGCAACGACCACCCACCCGCACGTTTGCACGTGCCCCG
CTCGTGCGCACTCTCCGGGCAATGTTGATGGGCTACAATCAACTCCAGGA
GCGCGTAGAAGAGTGGAGGCATTGGTGCTCATGGCCCGGGGCAgacgggg
acgtggaggtgggggatggCAGCGGCGCAGGAGGCAAGATGCTAATCCGA
TTGAATTTGACAAGTATGGATTCCCTATCCCGCCCCAGAAGCCCGCAAAG
gaactggaggaggagcatcgTGAGTGGATGGAGTCAATAGAGCCTCCAGA
AGGCTTTCCAGAATTTGACGCGGCCAAAGAGGGATTCTCaccggaggaaa
tggaaaatgaTCCTTTGTTGGACCCGGCCGTTGCTGTTACGACGGCAGAG
ACCGGAGCGGCGACCGTGATCGACGTGACAGCAAgcgaagagggggcggg
gcaggagaaCGAGCCAGACTGGGACAACATTCCTGAGTACGGTGGTGAGT
TTCTGGGCATGGACGACCCCCTCGATGCCCCGTGGCGGTTGCATGCCGAG
GATGTGATTCGGGGGGCCGTGACCGAGGCCGGCTACCACACCTACGACGT
GACATGGCACCTACACCATGTGAACGTGGACATTACCAGGCAGGACGTCG
GCAACGTAGaaaatgagggggagggagtggcggACGCAGGGTCTTTATCC
TCGGACGAGATAGTGGAGGTGACGCGTGCCGTTGAAGAGGCACTCTTGCC
GCACGACAACCACCTGCGAATCCTGCAGCGCTTTCACTTGTGCGTGGGCA
CGCCGGGAGCCAAGGACGTGCTGACCACCGAGAGAGAGTTTCAGGCATTT
CGGGGCTACGAGGTCCAGGTGTCTGTCACGAACCCGATCAATGAGAGCCC
CACACCCAACGTGCGCGTGGGCCGCTTGCTGGAGCGCAACCCCATGCACA
CGATTTTGAACGTCAAGGGGAAGAACGTGACGATACCAACCGGGATGGTC
GTAGAGGTGCGCCTGCCATCGGCCATGCACGAGGCGGACGACTtcgaggt
gatggaggaggggtgggcgaACCTGTTTGTGGACGGAAAGGTGCCGAGCA
CCGTGAGCGTCGAGTATGAGATGCCGGGGCTGACGACTCTGGGCAAGGGG
GTGAAGATGGTGGAGCCCGAGTACTAcgtgccgccctccctcccggacga
ggacggggaggaaggggagggagaggagtacgtgggtggtgaggaggacg
aggcctgA

Synonyms

Publications