rna4457, rna4457 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4457
Unique Name	rna4457
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2917
Alignment location	CM002463.1:636351..638178 +

Link to JBrowse

Properties


Property Name	Value
Product	WW/Rsp5/WWP
Orig transcript id	gnl\|cribi\|Naga_100025g33.7526.mrna
Orig protein id	gnl\|cribi\|Naga_100025g33.7526
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:636351..638178 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g33	gene4299	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4457	rna4457-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26235.1	cds4446	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:636351..638178+
coding sequence from alignment at CM002463.1:636351..638178+

mRNA sequence

>rna4457 ID=rna4457|Name=rna4457|organism=Nannochloropsis gaditana|type=mRNA|length=2917bp
CCAAGAGCTTAGTATGCATGTGCTCCACACGCGATGCTGTCCCCATGTGA
AGAAGACAGATTCGGGTTTGTTGATGTAGTGGAGCGTAACAAAAGCTTGG
AGACCAATGCACACTTTTTCTTGTCTCCCTGTGCGTATCACATGAGCAGA
CAGAGCAGACAAACAGCAACCAGGACTGCAGACCCAAAACAGGATAATTT
CATGGCGACTCCTTCCTCGATTGAACACCTTTCGCAATTGCCTCCACAAT
GGACGGAGTATTACTCCGACGAAGCAGAGGCGCCGTACTACTATAATTCT
GAAACTGGCGAGACGACATGGGACCGTCCCGGTCTGACACATGTTTCCCT
TCCTTCACCCTCACCTACTTCATCAAGTGAACCGCCGAAGGTTGAGGATG
TAGTCTCCTCTGTCACACAGTCTACTTATGGTATCATCAGCCCCAGGGTT
TCTGTCGTTCAAAAGGAAAGCTCATCATCAGTTCCCGATACGTCGGCTCG
CACAGTAGCAGCTTTCGGTGTCACTACCACAGGTGCACATAATTATCAAA
ATGCCTTCACCGAAGATTCGTCATCTCAGTATAATCACATGACAAGCAGC
GCGCCTCGCGTACTAAACGAGCAGCAAAGTGATCGATCAGGCAAGCTTAC
TGAGTCTCCACATGCTCTCTCCCCGAAGCTTCCTTCCGCGTCTCCTAACT
TTAGAGATGCGGATCTCAATCACACCACCGCTGCTACCGGAAGTTATTTT
TTCGATAGCTCAGAAGCACCGGCGGTAACCTCGGGGAGCTCCCAAAATGA
TGACCGATCCCCCAACACGGCGGCCCGGGCTCATGATCAGCTCATATCCC
ACTCGCAGGACCGCGAAGTGGCAGAGGCGACACCACAAGTGGAGAATTAC
TACTATCCAGAGCACCAGCGAGGAAATCAGGATCAGCACGCAATCCAAGG
GCATTCTCAGCCTCCTGTACAAGAATTTGATAAAACACAAGCTATCGAGG
GATCTGCCGCTATTAACATGCTGTCCGCCCCGACCGGCAGCGGACAAAAC
ACTGTCGAATCGCCCAAACAGCCAACCACCACGCCAAGTGGTCTGTCAGA
AGACGCACGCCTCGAGCGCATCGAAGCAAAGCTTGATCTACTCCTCAGGC
ACTTCAACATTTCCGTTTGAAGAGCCAAGCCCAGTTGAGAGCTTACTTTC
CTACATTGGAAAACATCTTTTAGTATTTCTCTCCTCGATATGCAGCCATT
TCTAATTGTAAAAGCCTAAGACTATGAAGAATTTGATGCAAGCTTATATC
TCCACATCCCGAAGCCGCATAGATATCGATACACGTACACACATAATCTC
ATAGCTTTGCACGCAAAAGACAATATTTAAGAGCATGTCACGGCCGCTAT
TGTGAACTCATGGGTCAATTGTTATTTTTTCCCCAAGTATCTTTAGTGTC
TTTTTCTCTAATTCAGACCACGTTTTTTCATCGTTTCCAAACTCGCCGCG
TATGGCAGCAAACAAAGACTTGGTAAGTAGCTCCACGTCTCGCTTTTCAA
GCGTATCCTGTGTCACAAAGAAAGCACTTTTCTCTCGAAACCTCTTCATG
ACCTCTGTTTTCGCTACCTGAAACCCTCGCCCAAGACTAGAGAGAGTACC
TGACAGCCGCACATCAGTCCCGGCCAAGAGCATCGCGGTGCCGATGACCC
GACGTAGCGCCAATTCAGCCGTGTGAACCACACTTTCACGTACCTTCTGC
CGATCCCTTTCTTTTTTCGCTTCTTCCTCAAAGCAGGACTTAGGAATGAA
GGCAGGAGCCTCCCACCCACGCTCTACTACAGACCAGATTTTATCCAAGG
TCGTTTCATGTTCTGCGACAAGGCGTCCTCAACGGAAATGTCTACGTGGA
CGCACCCGTAGCCTGCACCGTTACGGGCAGCCATTAAATAGACTTTCCGG
CGCATGCTCGCATAGTACATATTGTCATCTAGTATCAAAATCCGACGAGA
GGGCTTCGACAGTCCAACAGGTGTAGAGCTACCCCTCTCTTGGTGTAAAA
TACTTTCAGCTTGTGCCAAGGCTTTGCTTCGCGCACGATGCCATACTGCT
ATAGGATGTAGTCCTTCATCTTCCTCGCGAAGACGAGCCTCGATAGCATC
AAACTCAATGCGTTGCACTTCACACTCTTTACCCGGATAGCGTGAGGACG
CAGAGTCTTGCAGACGGCATCCCCAATAACTTTTCCCTGCAGCAGGAAGG
CCACACATTACCAAAACCACTGTGGACGTATCGGACATATAGTCGCATAC
TTTGCAGTAAATTTCAACCTGTTATTGTCGGTCGTGGTGTTGACTTTTTT
CAGTGTGCAGATCGTATCGAATGAGGCGGCAAACTAACACAACAGTGCCC
TAAAAATATGAGCAGCTGACACACACTGACCACATGCCCCAAAATCGTTG
TAGACTTAGAGATTATGCGCCATGCTGATATCACGCCATATCGTGACATG
GCAGAAGCAAACGTAAGGCACAAATTATCAACAAGTTCCGAAATGGGGAA
GCGGTGGAAGGCTTCCACGATACCATTGGGCAAATTTCTCGTGCTTTTGA
AGGCAATTTGCATCGAAGCAATGGCAATGCCTTATATAAGTTTGTTGCAG
CATCCAACAAGACGGCAACAAAAAGATTGCCGGTGGTCCTACAACGTGCG
CACGTTTTCGCTAGGACAAGGCGGTGGGTCGATCCGGTCGAGGAAGGGCG
AGCTTGCCCTTTTTGAGCTATTTGAAAGTAAATCTTTGTACGATTTGGCA
CGCATAGAAAATGTAATGTTCAGAAGATAATCAACTTAAAAAGTGAAACA
GATGACATCCTTGACGTCAAATTGCACCTTTCCAGCTCAAGACGTCATCC
AGGTGAGTTTAGCTAGA

protein sequence of rna4457

>rna4457-protein ID=rna4457-protein|Name=rna4457|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MLSPCEEDRFGFVDVVERNKSLETNAHFFLSPCAYHMSRQSRQTATRTAD
PKQDNFMATPSSIEHLSQLPPQWTEYYSDEAEAPYYYNSETGETTWDRPG
LTHVSLPSPSPTSSSEPPKVEDVVSSVTQSTYGIISPRVSVVQKESSSSV
PDTSARTVAAFGVTTTGAHNYQNAFTEDSSSQYNHMTSSAPRVLNEQQSD
RSGKLTESPHALSPKLPSASPNFRDADLNHTTAATGSYFFDSSEAPAVTS
GSSQNDDRSPNTAARAHDQLISHSQDREVAEATPQVENYYYPEHQRGNQD
QHAIQGHSQPPVQEFDKTQAIEGSAAINMLSAPTGSGQNTVESPKQPTTT
PSGLSEDARLERIEAKLDLLLRHFNISV

mRNA from alignment at CM002463.1:636351..638178+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4457 ID=rna4457|Name=rna4457|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp|location=Sequence derived from alignment at CM002463.1:636351..638178+ (Nannochloropsis gaditana)
CCAAGAGCTTAGTATGCATGTGCTCCACACGCGATGCTGTCCCCATGTGA
AGAAGACAGATTCGGGTTTGTTGATGTAGTGGAGCGTAACAAAAGCTTGG
AGACCAATGCACACTTTTTCTTGTCTCCCTGTGCGTATCACATGAGCAGA
CAGAGCAGACAAACAGCAACCAGGACTGCAGACCCAAAACAGGATAATTT
CATGGCGACTCCTTCCTCGATTGAACACCTTTCGCAATTGCCTCCACAAT
GGACGGAGTATTACTCCGACGAAGCAGAGGCGCCGTACTACTATAATTCT
GAAACTGGCGAGACGACATGGGACCGTCCCGGTCTGACACAtgtttccct
tccttcaccctcACCTACTTCATCAAGTGAACCGCCGAAGGTTGAGGATG
TAGTCTCCTCTGTCACACAGTCTACTTATGGTATCATCAGCCCCAGGGTT
TCTGTCGTTCAAAAGGAAAGCTCATCATCAGTTCCCGATACGTCGGCTCG
CACAGTAGCAGCTTTCGGTGTCACTACCACAGGTGCACATAATTATCAAA
ATGCCTTCACCGAAGATTCGTCATCTCAGTATAATCACATGACAAGCAGC
GCGCCTCGCGTACTAAACGAGCAGCAAAGTGATCGATCAGGCAAGCTTAC
TGAGTCTCCACATGCTCTCTCCCCGAAGCTTCCTTCCGCGTCTCCTAACT
TTAGAGATGCGGATCTCAATCACACCACCGCTGCTACCGGAAGTTATTTT
TTCGATAGCTCAGAAGCACCGGCGGTAACCTCGGGGAGCTCCCAAAATGA
TGACCGATCCCCCAACACGGCGGCCCGGGCTCATGATCAGCTCATATCCC
ACTCGCAGGACCGCGAAGTGGCAGAGGCGACACCACAAGTGGAGAATTAC
TACTATCCAGAGCACCAGCGAGGAAATCAGGATCAGCACGCAATCCAAGG
GCATTCTCAGCCTCCTGTACAAGAATTTGATAAAACACAAGCTATCGAGG
GATCTGCCGCTATTAACATGCTGTCCGCCCCGACCGGCAGCGGACAAAAC
ACTGTCGAATCGCCCAAACAGCCAACCACCACGCCAAGTGGTCTGTCAGA
AGACGCACGCCTCGAGCGCATCGAAGCAAAGCTTGATCTACTCCTCAGGC
ACTTCAACATTTCCGTTTGAAGAGCCAAGCCCAGTTGAGAGCTTACTTTC
CTACATTGGAAAACATCTTTTAGTATTTCTCTCCTCGATATGCAGCCATT
TCTAATTGTAAAAGCCTAAGACTATGAAGAATTTGATGCAAGCTTATATC
TCCACATCCCGAAGCCGCATAGATATCGATACACGTACACACATAATCTC
ATAGCTTTGCACGCAAAAGACAATATTTAAGAGCATGTCACGGCCGCTAT
TGTGAACTCATGGGTCAATTGTTATTTTTTCCCCAAGTATCTTTAGTGTC
TTTTTCTCTAATTCAGACCACGTTTTTTCATCGTTTCCAAACTCGCCGCG
TATGGCAGCAAACAAAGACTTGGTAAGTAGCTCCACGTCTCGCTTTTCAA
GCGTATCCTGTGTCACAAAGAAAGCACTTTTCTCTCGAAACCTCTTCATG
ACCTCTGTTTTCGCTACCTGAAACCCTCGCCCAAGACTAGAGAGAGTACC
TGACAGCCGCACATCAGTCCCGGCCAAGAGCATCGCGGTGCCGATGACCC
GACGTAGCGCCAATTCAGCCGTGTGAACCACACTTTCACGTACCTTCTGC
CgatccctttcttttttcgcttcttcctcaaaGCAGGACTTAGGAATGAA
GGCAGGAGCCTCCCACCCACGCTCTACT

Coding sequence (CDS) from alignment at CM002463.1:636351..638178+

>rna4457 ID=rna4457|Name=rna4457|organism=Nannochloropsis gaditana|type=CDS|length=1137bp|location=Sequence derived from alignment at CM002463.1:636351..638178+ (Nannochloropsis gaditana)
ATGCTGTCCCCATGTGAAGAAGACAGATTCGGGTTTGTTGATGTAGTGGA
GCGTAACAAAAGCTTGGAGACCAATGCACACTTTTTCTTGTCTCCCTGTG
CGTATCACATGAGCAGACAGAGCAGACAAACAGCAACCAGGACTGCAGAC
CCAAAACAGGATAATTTCATGGCGACTCCTTCCTCGATTGAACACCTTTC
GCAATTGCCTCCACAATGGACGGAGTATTACTCCGACGAAGCAGAGGCGC
CGTACTACTATAATTCTGAAACTGGCGAGACGACATGGGACCGTCCCGGT
CTGACACAtgtttcccttccttcaccctcACCTACTTCATCAAGTGAACC
GCCGAAGGTTGAGGATGTAGTCTCCTCTGTCACACAGTCTACTTATGGTA
TCATCAGCCCCAGGGTTTCTGTCGTTCAAAAGGAAAGCTCATCATCAGTT
CCCGATACGTCGGCTCGCACAGTAGCAGCTTTCGGTGTCACTACCACAGG
TGCACATAATTATCAAAATGCCTTCACCGAAGATTCGTCATCTCAGTATA
ATCACATGACAAGCAGCGCGCCTCGCGTACTAAACGAGCAGCAAAGTGAT
CGATCAGGCAAGCTTACTGAGTCTCCACATGCTCTCTCCCCGAAGCTTCC
TTCCGCGTCTCCTAACTTTAGAGATGCGGATCTCAATCACACCACCGCTG
CTACCGGAAGTTATTTTTTCGATAGCTCAGAAGCACCGGCGGTAACCTCG
GGGAGCTCCCAAAATGATGACCGATCCCCCAACACGGCGGCCCGGGCTCA
TGATCAGCTCATATCCCACTCGCAGGACCGCGAAGTGGCAGAGGCGACAC
CACAAGTGGAGAATTACTACTATCCAGAGCACCAGCGAGGAAATCAGGAT
CAGCACGCAATCCAAGGGCATTCTCAGCCTCCTGTACAAGAATTTGATAA
AACACAAGCTATCGAGGGATCTGCCGCTATTAACATGCTGTCCGCCCCGA
CCGGCAGCGGACAAAACACTGTCGAATCGCCCAAACAGCCAACCACCACG
CCAAGTGGTCTGTCAGAAGACGCACGCCTCGAGCGCATCGAAGCAAAGCT
TGATCTACTCCTCAGGCACTTCAACATTTCCGTTTGA

Synonyms

Publications