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Properties
| Property Name | Value |
|---|
| Product | WW/Rsp5/WWP |
| Orig transcript id | gnl|cribi|Naga_100025g33.7527.mrna |
| Orig protein id | gnl|cribi|Naga_100025g33.7527 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:636351..639403 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4456 ID=rna4456|Name=rna4456|organism=Nannochloropsis gaditana|type=mRNA|length=4292bp
CATGATGACTTCGGTCCTGGGCCAAATGACCTTCAAACAAGACACAAACC
AAGACCTATGCATTCATGCTTACTTTCGCTTCTAATACTCAGGACATCGA
CTTTTGTGGCATTTTGTCGACAGCACAAAGGACCATGACATGGGTGTTGA
CTGAGGAGAGGGCTGTGTCTTTTTGAAGCAAGAGTCGCCGGGCACCAAAC
ATTTACCAACTTTGCAGCCGTTTGGACGACAGCCTCCAAAAATACCTTAA
AATATGTCTCATATGAGTAGCTATGACCTTAAACTTAAGGAGGCGGCATT
GGAGCGATCTGCCGTATGCCTCTTGGTGGTAAAGCACATAGACTCGGATG
GGGGCAGACCCGTGCCGCACAAGCTGGTGCCAGACTTCCGGAAAGAGGAA
TTATGCAATCCTTACATTGAGGAGATGCTGAGAGAATCGTCTGGCAGATT
ACTCGAGTGCTTGCCAGAAATGTACTGTTCCACGACACGATGTTCTGCTG
CTGTCAGGGACACTGAGACCGATGTGGATCACTCGGCTTCTAACGGAGGC
ATTCAACCAGCAACTTACGCGGCGAACATTGTGCGCTTGGCCCCAGAGCT
TCTGGGTACTTTAACGGACTGTTGTTATTTTATATTATACTTGGGAGACA
CCCCACCCCCATCCACGAATCCTTTCGATGACGATCCTGACCTCTACCCG
TCGCCTTCCGCGATTTCGACCTCTGTTCCTGCGCTTGGCGAAAGCGTCCG
TACGACTAAAAATGGTACTTGTTCTGCTCCAATCCCATCCTACATGAGTC
TACGGGCACGGCGTCGGCGTGTCTATGGCATTTGCCGTCGTGCTCCTCCG
TCAATTTCCTACAGCGTTTTGCTGCTTTCAGCAACCCCCTGTTTCGATGT
GCTCCAGCACCAGTTCATGTCCTTGACCACTGCTTTCTTCAACAGAAATT
TTCAAGACGACACCGGTGATTTGCGGGCCTTTCTTTTGGCGATATCCAAT
CCGACCACGGGCATCCTACACCGTGAAACAGCCTCGCACTACCGGGATGT
GCCAGTCTTGTGGTTGGTCAAGCTGCTGGGTATAGAGCATGTCTTGGGAC
TTGTGAAGCTCTTGCTGCTAGAAGGCCGAATTCTGTTCCATTCAAGCAAG
CCCTATAAGTCCTCAAGCGCGGTGTTGGCGCTACTTACGCTGATTCCCGG
CCTTTACACTCAAGCTTTAGAGGACGAGGAGGGGCCCTCGAGAGCCTTGC
GCGGCTATCGGTGGAGCAAATTCGGGATGCCTCTCCGTATTTTCCACGAA
GACAAGTTCGTTTTGCAGCCCCTGCTGGTCATAAGCAAGGCCACGTCTTT
CTTCGACAAAAACCCTGGCTTCCTAGTAGGGACGTCAAACCCTCTGATAA
GTGCTCTTCCAAGCGCTCGACTTGATGCGGTCGTGAATCTAGACACGTGT
CAGATCGACTCCCAGCGATTCTCGGCCCTCACAGCTGCTGGTTCGGTCAT
AGACGATGCCTCCACTTCCAGGAGCAGTGCTGCCTCGACTCACACGGAGC
CCTGTTCGGAGAGGGGGAGAGAGAGTGCTTGTGTGTCTCCGACTTCGTTA
ATGGTGGACTTGGCGCGAATCGCTTTTGAGTACGGCCCTGCGGATGTAGA
CTTTCTGGAGCAAGTGATGGAAAGCCTGCCGACTCCGGACGATCGGGAGG
CGGTGGACGAAGAGGGGAGGGCCTCTCTCTCAGGGGAGAGCGAGGGGGAA
GGTGCGTCCGTTGAATGGGAGGGGAGTGATAGCTGGATCCGGCAATCGTT
CCAATCGTACTTTGAGCGCTTTTTGGAATTGGCGGCCCTGGCCCTACATG
AGTTCATGCGCGACGGTGCAGCCGCGACGTCCATGTCGTCGTCTTGGATG
CGGAAGGCCATGACGGGTCTGTTGCAGGCCACCCCTCGCTCCACTTGCGG
ATTCGACGTCAAGTTGATGGACTACAATCGTGCCTGGGTAGGACAGTGGA
CCACCACGCTCAATTTCAGGATCTGGCATGACCAATACCCCCACCCGTGC
TTGCCTCCTGATGATCCGTCTCCTCAAAACAAACACAACTCGCCAACATT
GTTGTCTTTGTCTAGTTTCCCATTCTCTTCTGCGAAAGAGAGTGGCGCAG
CCCTAAGAAAAGACGCACCGCCGGCGCCGGGAGATGGGGTCGTCGATTAC
GTGTACCCCAACGGCGATACGTACCAGGGGGAAATGCGGGGCGGCCAGAG
GCAAGGAAAAGGAAGCTACGTGGAGCACGCGACAGGCAACACATACGAGG
GGGACTGGGTAAAAGACATGCGGCACGGCCAAGGCATCCTGACGACCGGC
GCGCGGGATTTCTTGTACGACGGTGACTGGGTGTTGGATAAACGCCAAGG
CCAAGGGCATTGCACCATTCGCGGCCGGGCGACGTACTCGGGCGGATTCG
CGGAGAACAAGTTCCACGGACAGGGCAAATTTGTGGACTCGGAGGGGAAC
GTGTACGAGGGGGGCTGGGCCCGGGGCTTGAAGGAGGGGATGGGTACCCT
GCGCAGAGCGGGGGGGGAGTCCTACGCAGGTGAGTGGAAAGGGGGTCAGA
GGCATGGTCTCGGGACCTGCCAGTTCGGCAGCTCCCAGTATACAGGCGAG
TGGCGGGAGGGGAAACGAAGCGGGGAAGGGAAAATGGTGGTGGCTGTTGC
TACGGGGCCGGAGGCCACGTCGAGTGAAGGCCAGGGCGGGCGAGAGACGT
ACGAGGGCCAATGGCTGGAGGATGAGCGGCACGGATGGGGGGTGCATACA
TCCGCGGACGGCGACGTGAGAGAAGGCGAGTGGTACCAAGACAAGCTGAA
AGACGGGGAGTGCAAGGTCACTTATGCCTGCGGAGATCAGTACCTGGGGG
AGTGCCTGGACGGCCGACCGCACGGACACGGTACTTGTAAATTTGTAAAT
GGAGATGTCTACATGGGTGGGTGGGAGGACGGGGTCCGGGCTGGGGAAGG
CGTGTGCATCTACGCATCGGGAGAGACCTATCAGGGTATGTGGGTGGCTG
ACCGGCCTGCAGTAGGCGAGTGCTCCAGCATTCCATCCATCCACGAAGAG
GAAGGCGGAGAAGACGGACTTGGGAGAGGAAAAGCGGTAGGCAACGCGAC
TGCCACGGTCGACAATCCCCGGCGTCGCTTGCTTGTGCATGCGCCCACTT
CCTCATCCAAGGCAGTAGGGCCGGCGCCGACACCGCTCGCTGAGATCGCG
CGTATGTCAGGCCCCGACTGTTGGATCCTGTACCCGGGCACGGGCGACAC
CTACGAGGGATCCATGCTGCAGGGAAAGCGGCACGGCCAGGGCATCTACA
GGGAGAAGGCTTCAGGGAACAGGTACGAAGGGTCCTTTCGAGCGGACCAC
CGGCATGGGCATGGCGTCCTGGTCTCGGGGGGGAAAGACTTCTTGTACGA
CGGGGAGTGGCTGGATGATCGGAGGACAGGACGGGGCCATTGCACGCTCA
AGGGGAAGGAAACGTATACGGGGGAGTGGTTCGAGGACGCCTATCATGGC
AAGGGGAAGCATGTCGACGCGGGGGGGAATACCTTCGAGGGGGAGCATGT
CCGGGGGCGAAGGGAGGGGCTGGGTACCCTCCTGTGCACAAATGGTGAGG
TGTTCATAGGGGAGTGGAAGAACGGGCAGAAGGAAGGCGTCGGGCAGTGC
CAGTACGCTGACGGGGGGTGTTATTCGGGCGAGTGGTACCAGGACCGGTG
GCACGGCGAAGGTGTCTTTCTGGCGGCGTCCGGGGACAAGCACGAAGGCT
CTTGGAGCGAGGGCAAGCGCATGGGCTGGGGCGCCTGGACGTCTCCCACT
GGCGACGTGATCGAGGGGGAATGGTACCAGGACGAACCCAAGGATGGGGA
ATGGAAAATCACCTACAGCAACGGCGACCAGTTTGTGGGCGCTTGCCGAG
AGGGCCGGCCGGAGGGCTTCGGGATCTGCAAGTACGCGAACGGGGCCGTA
TACTCGGGCCACTGGGAAGAGGGTCTACGGGCTGGACAGGGCAAATGCGT
GTTTGCGAACGGGGAGATCTACGACGGGCTCTGGGAGAAGGACCGCGTCT
CTTTGCGAGGGTTGGGGACGCTATCCTTTCAGGATGGCCGGGTACACAAT
TTCTCCTAGAGGAGTGACTGGGTGGGCGGAGGGGCTAGGGCTGCATGCCA
CGTGCAATCTCACGTAAGGAGGATCAAAGGAAAAAGGTTGTTGCCCGACG
TCTCGGCGTCACCCCCCACGTGCATCCTAAAGGTCTTTTCTT back to topprotein sequence of rna4456 >rna4456-protein ID=rna4456-protein|Name=rna4456|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MLSPCEEDRFGFVDVVERNKSLETNAHFFLSPCAYHMSRQSRQTATRTAD
PKQDNFMATPSSIEHLSQLPPQWTEYYSDEAEAPYYYNSETGETTWDRPG
LTHVSLPSPSPTSSSEPPKVEDVVSSVTQSTYGIISPRVSVVQKESSSSV
PDTSARTVAAFGVTTTGAHNYQNAFTEDSSSQYNHMTSSAPRVLNEQQSD
RSGKLTESPHALSPKLPSASPNFRDADLNHTTAATGSYFFDSSEAPAVTS
GSSQNDDRSPNTAARAHDQLISHSQDREVAEATPQVENYYYPEHQRGNQD
QHAIQGHSQPPVQEFDKTQAIEGSAAINMLSAPTGSGQNTVESPKQPTTT
PSGLSEDARLERIEAKLDLLLRHFNISV back to topmRNA from alignment at CM002463.1:636351..639403+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4456 ID=rna4456|Name=rna4456|organism=Nannochloropsis gaditana|type=mRNA|length=3053bp|location=Sequence derived from alignment at CM002463.1:636351..639403+ (Nannochloropsis gaditana)
CCAAGAGCTTAGTATGCATGTGCTCCACACGCGATGCTGTCCCCATGTGA
AGAAGACAGATTCGGGTTTGTTGATGTAGTGGAGCGTAACAAAAGCTTGG
AGACCAATGCACACTTTTTCTTGTCTCCCTGTGCGTATCACATGAGCAGA
CAGAGCAGACAAACAGCAACCAGGACTGCAGACCCAAAACAGGATAATTT
CATGGCGACTCCTTCCTCGATTGAACACCTTTCGCAATTGCCTCCACAAT
GGACGGAGTATTACTCCGACGAAGCAGAGGCGCCGTACTACTATAATTCT
GAAACTGGCGAGACGACATGGGACCGTCCCGGTCTGACACAtgtttccct
tccttcaccctcACCTACTTCATCAAGTGAACCGCCGAAGGTTGAGGATG
TAGTCTCCTCTGTCACACAGTCTACTTATGGTATCATCAGCCCCAGGGTT
TCTGTCGTTCAAAAGGAAAGCTCATCATCAGTTCCCGATACGTCGGCTCG
CACAGTAGCAGCTTTCGGTGTCACTACCACAGGTGCACATAATTATCAAA
ATGCCTTCACCGAAGATTCGTCATCTCAGTATAATCACATGACAAGCAGC
GCGCCTCGCGTACTAAACGAGCAGCAAAGTGATCGATCAGGCAAGCTTAC
TGAGTCTCCACATGCTCTCTCCCCGAAGCTTCCTTCCGCGTCTCCTAACT
TTAGAGATGCGGATCTCAATCACACCACCGCTGCTACCGGAAGTTATTTT
TTCGATAGCTCAGAAGCACCGGCGGTAACCTCGGGGAGCTCCCAAAATGA
TGACCGATCCCCCAACACGGCGGCCCGGGCTCATGATCAGCTCATATCCC
ACTCGCAGGACCGCGAAGTGGCAGAGGCGACACCACAAGTGGAGAATTAC
TACTATCCAGAGCACCAGCGAGGAAATCAGGATCAGCACGCAATCCAAGG
GCATTCTCAGCCTCCTGTACAAGAATTTGATAAAACACAAGCTATCGAGG
GATCTGCCGCTATTAACATGCTGTCCGCCCCGACCGGCAGCGGACAAAAC
ACTGTCGAATCGCCCAAACAGCCAACCACCACGCCAAGTGGTCTGTCAGA
AGACGCACGCCTCGAGCGCATCGAAGCAAAGCTTGATCTACTCCTCAGGC
ACTTCAACATTTCCGTTTGAAGAGCCAAGCCCAGTTGAGAGCTTACTTTC
CTACATTGGAAAACATCTTTTAGTATTTCTCTCCTCGATATGCAGCCATT
TCTAATTGTAAAAGCCTAAGACTATGAAGAATTTGATGCAAGCTTATATC
TCCACATCCCGAAGCCGCATAGATATCGATACACGTACACACATAATCTC
ATAGCTTTGCACGCAAAAGACAATATTTAAGAGCATGTCACGGCCGCTAT
TGTGAACTCATGGGTCAATTGTTATTTTTTCCCCAAGTATCTTTAGTGTC
TTTTTCTCTAATTCAGACCACGTTTTTTCATCGTTTCCAAACTCGCCGCG
TATGGCAGCAAACAAAGACTTGGTAAGTAGCTCCACGTCTCGCTTTTCAA
GCGTATCCTGTGTCACAAAGAAAGCACTTTTCTCTCGAAACCTCTTCATG
ACCTCTGTTTTCGCTACCTGAAACCCTCGCCCAAGACTAGAGAGAGTACC
TGACAGCCGCACATCAGTCCCGGCCAAGAGCATCGCGGTGCCGATGACCC
GACGTAGCGCCAATTCAGCCGTGTGAACCACACTTTCACGTACCTTCTGC
CgatccctttcttttttcgcttcttcctcaaaGCAGGACTTAGGAATGAA
GGCAGGAGCCTCCCACCCACGCTCTACTACAGACCAGATTTTATCCAAGG
TACGCGCCCcaacctcttcttcctgccgTTCAATCACAAGTGTGTTCGTC
TCCCACCTGCGAGTGGATTTATTTGGGGCCTCCAATCTGGCATTCATACG
CCTGATGACCTTCTCATCAACTCTCTGCCTCAAAGGTCGTTTCATGTTCT
GCGACAAGGCGTCCTCAACGGAAATGTCTACGTGGACGCACCCGTAGCCT
GCACCGTTACGGGCAGCCATTAAATAGACTTTCCGGCGCATGCTCGCATA
GTACATATTGTCATCTAGTATCAAAATCCGACGAGAGGGCTTCGACAGTC
CAACAGGTGTAGAGCTACCCCTCTCTTGGTGTAAAATACTTTCAGCTTGT
GCCAAGGCTTTGCTTCGCGCACGATGCCATACTGCTATAGGATGTAgtcc
ttcatcttcctcgcgAAGACGAGCCTCGATAGCATCAAACTCAATGCGTT
GCACTTCACACTCTTTACCCGGATAGCGTGAGGACGCAGAGTCTTGCAGA
CGGCATCCCCAATAACTTTTCCCTGCAGCAGGAAGGCCACACATTACCAA
AACCACTGTGGACGTATCGGACATATAGTCGCATACTTTGCAGTAAATTT
CAACCTGTTATTGTCGGTCGTGGTGTTGACTTTTTTCAGTGTGCAGATCG
TATCGAATGAGGCGGCAAACTAACACAACAGTGCCCTAAAAATATGAGCA
GCTGACACACACTGACCACATGCCCCAAAATCGTTGTAGACTTAGAGATT
ATGCGCCATGCTGATATCACGCCATATCGTGACATGGCAGAAGCAAACGT
AAGGCACAAATTATCAACAAGTTCCGAAATGGggaagcggtggaaggcTT
CCACGATACCATTGGGCAAATTTCTCGTGCTTTTGAAGGCAATTTGCATC
GAAGCAATGGCAATGCCTTATATAAGTTTGTTGCAGCATCCAACAAGACG
GCAACAAAAAGATTGCCGGTGGTCCTACAACGTGCGCACGTTTTCGCTAG
GACAAGGCGGTGGGTCGATCCggtcgaggaagggcgagcTTGCCCTTTTT
GAGCTATTTGAAAGTAAATCTTTGTACGATTTGGCACGCATAGAAAATGT
AATGTTCAGAAGATAATCAACTTAAAAAGTGAAACAGATGACATCCTTGA
CGTCAAATTGCACCTTTCCAGCTCAAGACGTCATCCAGGTGAGTTTAGCT
AGA back to topCoding sequence (CDS) from alignment at CM002463.1:636351..639403+ >rna4456 ID=rna4456|Name=rna4456|organism=Nannochloropsis gaditana|type=CDS|length=1137bp|location=Sequence derived from alignment at CM002463.1:636351..639403+ (Nannochloropsis gaditana)
ATGCTGTCCCCATGTGAAGAAGACAGATTCGGGTTTGTTGATGTAGTGGA
GCGTAACAAAAGCTTGGAGACCAATGCACACTTTTTCTTGTCTCCCTGTG
CGTATCACATGAGCAGACAGAGCAGACAAACAGCAACCAGGACTGCAGAC
CCAAAACAGGATAATTTCATGGCGACTCCTTCCTCGATTGAACACCTTTC
GCAATTGCCTCCACAATGGACGGAGTATTACTCCGACGAAGCAGAGGCGC
CGTACTACTATAATTCTGAAACTGGCGAGACGACATGGGACCGTCCCGGT
CTGACACAtgtttcccttccttcaccctcACCTACTTCATCAAGTGAACC
GCCGAAGGTTGAGGATGTAGTCTCCTCTGTCACACAGTCTACTTATGGTA
TCATCAGCCCCAGGGTTTCTGTCGTTCAAAAGGAAAGCTCATCATCAGTT
CCCGATACGTCGGCTCGCACAGTAGCAGCTTTCGGTGTCACTACCACAGG
TGCACATAATTATCAAAATGCCTTCACCGAAGATTCGTCATCTCAGTATA
ATCACATGACAAGCAGCGCGCCTCGCGTACTAAACGAGCAGCAAAGTGAT
CGATCAGGCAAGCTTACTGAGTCTCCACATGCTCTCTCCCCGAAGCTTCC
TTCCGCGTCTCCTAACTTTAGAGATGCGGATCTCAATCACACCACCGCTG
CTACCGGAAGTTATTTTTTCGATAGCTCAGAAGCACCGGCGGTAACCTCG
GGGAGCTCCCAAAATGATGACCGATCCCCCAACACGGCGGCCCGGGCTCA
TGATCAGCTCATATCCCACTCGCAGGACCGCGAAGTGGCAGAGGCGACAC
CACAAGTGGAGAATTACTACTATCCAGAGCACCAGCGAGGAAATCAGGAT
CAGCACGCAATCCAAGGGCATTCTCAGCCTCCTGTACAAGAATTTGATAA
AACACAAGCTATCGAGGGATCTGCCGCTATTAACATGCTGTCCGCCCCGA
CCGGCAGCGGACAAAACACTGTCGAATCGCCCAAACAGCCAACCACCACG
CCAAGTGGTCTGTCAGAAGACGCACGCCTCGAGCGCATCGAAGCAAAGCT
TGATCTACTCCTCAGGCACTTCAACATTTCCGTTTGA back to top
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