rna4452, rna4452 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4452
Unique Name	rna4452
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1108
Alignment location	CM002463.1:626846..628971 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100025g38.7524.mrna
Orig protein id	gnl\|cribi\|Naga_100025g38.7524
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:626846..628971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g38	gene4295	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4452	rna4452-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26233.1	cds4441	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:626846..628971+
coding sequence from alignment at CM002463.1:626846..628971+

mRNA sequence

>rna4452 ID=rna4452|Name=rna4452|organism=Nannochloropsis gaditana|type=mRNA|length=1108bp
CGCCGGTATGTCTCGTGATTGTGCGGTGGCATCTCAGTACCTGGGCGTCC
CGTCACGTTCACCTCCGTCCAAGACATGTTCGCAAAATCCTGAGCTGCAC
CCCTCCGATCAGCAACAACGCATGCATGTCAGACGGGTTTTGCAAGCTCA
AAATGCATTCGAGGTGCTTCAGCTGCCAGTCATGTGTTCAAGTTTTGCGA
CTGTGCGCACCGCTTATCGGAAATTTGCCCTACTTCTTCATCCTGATAAG
AATGCAGCGCACGAAGCTCAGAAAGCTTTCATTCGTCTTTCGGAGGCTTA
CGAAGCGCTTCGAGATACGAAAAGTCAGCAGAATATTATTTACAAGCTGA
ATTCCGATAGGGAAAGACAATGTGAGGGCTTGCACGGACGGTCTGACACG
TCGCCATCACGGAAGCGGAAATACGGAAGCACAGCTGCAAGCACGCCCGG
AAAAAGCGCATCGCCCAAATCATCGACTACATCTGTGCGAAAATCTTCTA
AAAGCTTTGCAGAGGTCTTACGTGAGTGGGAGAATTTTGAAAAACAGTAT
GTGGAGGAGCTTCGCAATAAACAAATGTCAGTGGAAGCGCAAGCCCGGAA
AGAGCTGCGGCGAAGTAGACGTGAGGACGTAGAAGAACAGCAGGCGGCCG
AGCGTCGAACACTTCTGGCTCATTTGTTGGCGAATGTGCAAGATGATAGT
GAGGATGATGTACCGACGGCCTTACATACACGAGAAGGTCAGGAAAGGGA
GATCGAAGAGGGACTCCGGACTCCACGACCTCGCAACACATGGCAAACGT
TCCTCAGGGGGCGGAAGCGAGGCCGGCGTCAGGAACGCGTCGAGGAAAAT
GGGGCCAGAAAGCAAGGAATATGAAAAAAAGTGACATTAGTGTACAGCGC
ACGTGGGGATGGCAAAGGCAGGGAAGGCGGAACGGATGCCGCAATGTATA
TGACAACTTTTTCGAAATACTGAACTGAAACATATAGTTAATTGTATTGA
GGCAACAAGAAAAAGCAGGGAAGTTCCTTTCTGTATGTTTGGCGGCTTCA
TGCACAGATACTTAATGCAAAGATAGTCAAAAAATCAATACGCTCTTCAT
TTCTGTGC

protein sequence of rna4452

>rna4452-protein ID=rna4452-protein|Name=rna4452|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MLGSRQSPYSSMGQYGPRRNYSTYGRPSARLPHLRLDTTLVLLVVCFFMG
MYLPGWMGMAPTESLGRGNDGSMSRENFAVSTPDLLERVQILKARMTDAE
KKAAAVLEENQKLRLDNEIEQANLKTLTKAKNEEIRGLQARIDSTEEKLD
ATKKQNVDGNEKEELHKTRSEIKDMEDQIKSLKKQLELASQKSPSDSTHQ
HEKAAAGSIPSSKKEPKKSEVVDVVKKPLLTRKTVSVPEPQPLNPLWEAR
LHALFDLAQSDPASLLSKLDDSNADPLGVNVGGPTNFTCPPPSERLTQPD
LRRIEVATQFRGGHGFVFFQHLRKAGGTGFCDMASRNMPGHVPSYYCMPD
HRGTLATPPWTTSWLLDTIEEKSFRIAANEWDPFLRAWFAIGDAVFATTI
RDPTDRWYSQYRFEHVEHRDGTTQNSVPKPFDVWYGQEHSRNMGHNYYVK
TFLGEATETEPLQRKGPNGVPLVHGNFYWAYNKYQARVLTWEDFRMAMDT
LLRFHVVLVMEWLDEANATMKSTLGWTEAPRQILPHEVQAARQEKKSKSA
RALLDKKVFDSTREANVLDHLFFEAARRIFLERHACESA

mRNA from alignment at CM002463.1:626846..628971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4452 ID=rna4452|Name=rna4452|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp|location=Sequence derived from alignment at CM002463.1:626846..628971+ (Nannochloropsis gaditana)
ATGCTTGGTAGTCGGCAGTCGCCCTATTCCTCCATGGGGCAGTACGGCCC
CCGACGGAACTATTCTACCTACGGTCGGCCATCAGCCAGGCTGCCACATC
TACGCTTGGATACCACGCTAGTATTGCTCGTTGTATGCTTCTTCATGGGA
ATGTATTTGCCGGGTTGGATGGGAATGGCGCCCACTGAGTCGCTTGGACG
GGGCAACGACGGTTCTATGAGCCGCGAAAACTTCGCTGTAAGTACCCCTG
ACTTGCTGGAGAGAGTTCAAATTTTGAAGGCTCGCATGACGGACGCCGAA
AAGaaagctgctgctgtcctcGAAGAAAATCAAAAACTCCGACTGGACAA
CGAAATTGAGCAGGCAAACCTCAAGACTTTGACCAAAGCCAAGAATGAGG
AGATCAGGGGACTTCAGGCCCGAATAGACAGCACCGAAGAAAAGTTGGAT
GCGACCAAAAAACAGAATGTAGATGGcaatgagaaagaggagcttCACAA
GACAAGATCTGAGATAAAAGATATGGAAGACCAAATCAAAAGCCTCAAAA
AACAGCTGGAGCTCGCATCGCAGAAGAGTCCTTCGGATAGTACCCACCAG
CATGAGAAGGCAGCCGCGGGCAGTATTCCTTCATCGAAAAAGGAACCAAA
GAAATCGGAGGTAGTTGACGTTGTCAAGAAACCGCTTTTGACTCGGAAAA
CCGTGTCCGTACCCGAGCCCCAACCGTTAAATCCTTTGTGGGAGGCACGC
TTGCACGCGCTCTTTGACCTCGCTCAGTCGGAcccggcctcccttctctc
caaaCTCGACGATTCCAACGCCGATCCACTGGGCGTGAATGTTGGCGGTC
CGACCAACTTtacttgcccccctcccagcgAGAGATTGACGCAGCCGGAC
CTCCGACGCATAGAAGTGGCCACCCAGTTtcgcggcggccacggctTTGT
GTTCTTCCAGCACCTCAGGAAAGCGGGGGGCACGGGGTTTTGCGACATGG
CGTCACGAAACATGCCCGGGCACGTTCCTTCCTACTACTGCATGCCGGAC
CACCGGGGAACCCTGGCCACGCCTCCATGGACTACCTCTTGGCTGCTGGA
TACGATTGAGGAGAAGAGCTTCCGGATCGCCGCCAACGAGTgggacccct
tcctccgcgcctggTTTGCGATTGGCGATGCCGTCTTCGCCACTACCATA
CGCGATCCCACCGACCGCTGGTACAGCCAATACCGTTTTGAGCACGTGGA
GCATCGGGACGGCACCACCCAAAACAGCGTGCCCAAGCCCTTCGATGTCT
GGTACGGACAGGAGCACTCCCGCAACATGGGCCACAATTACTACGTCAAG
ACGTTCCTGGGCGAGGCCACGGAGACCGAGCCGttgcagaggaaggggcc
gaaCGGGGTCCCTCTCGTTCATGGAAACTTCTACTGGGCATACAACAAGT
ACCAGGCCCGAGTGCTGACCTGGGAGGATTTCCGGATGGCGATGGATACC
TTGCTTCGTTTTCACGTGGTGCTGGTGATGGAATGGTTGGATGAGGCAAA
CGCCACCATGAAAAGCACTCTGGGCTGGACGGAGGCCCCCCGGCAGATCT
TGCCGCATGAGGTCCAGGCGGCgcggcaggagaagaagagtaAATCCGCC
CGGGCTCTGTTGGACAAAAAAGTCTTTGACAGCACACGCGAGGCCAATGT
GCTGGACCACCTCTTTTTCGAAGCGGCCCGACGGATTTTCCTGGAGAGAC
ATGCGTGCGAGAGCGCCTGAGGGGAATGCATAGATAGAGTGGATGGATAG
AGAGCAGACGGCGTGTAGCCGATTAAAAGGCATTTTGCCTACAAAGGATG
CTAAATTTTAGAAAGCCCGTGAAACTGCGGCCATGGGGCATGCTCGTGAT
AAGCGCCCGTGAAAGAATCAAAATCCCTCAACGTGAATAGACCATGCAGG
TCCTGTTACCCCCACCCAAGGCTGACGGGTTTCGGGCGGCATGCTTTCCT
TCGGACGTGTTATCCCTGGCCAGGTTCCTAAGGAACAGTCCACCCCTCTG
TGCGCATGTCACGGTGCGGCTGCCGCTGCATCTCATGCTGCCATCAGGCT
TAAAACGACGACTCTTACGTGAAAGC

Coding sequence (CDS) from alignment at CM002463.1:626846..628971+

>rna4452 ID=rna4452|Name=rna4452|organism=Nannochloropsis gaditana|type=CDS|length=1770bp|location=Sequence derived from alignment at CM002463.1:626846..628971+ (Nannochloropsis gaditana)
ATGCTTGGTAGTCGGCAGTCGCCCTATTCCTCCATGGGGCAGTACGGCCC
CCGACGGAACTATTCTACCTACGGTCGGCCATCAGCCAGGCTGCCACATC
TACGCTTGGATACCACGCTAGTATTGCTCGTTGTATGCTTCTTCATGGGA
ATGTATTTGCCGGGTTGGATGGGAATGGCGCCCACTGAGTCGCTTGGACG
GGGCAACGACGGTTCTATGAGCCGCGAAAACTTCGCTGTAAGTACCCCTG
ACTTGCTGGAGAGAGTTCAAATTTTGAAGGCTCGCATGACGGACGCCGAA
AAGaaagctgctgctgtcctcGAAGAAAATCAAAAACTCCGACTGGACAA
CGAAATTGAGCAGGCAAACCTCAAGACTTTGACCAAAGCCAAGAATGAGG
AGATCAGGGGACTTCAGGCCCGAATAGACAGCACCGAAGAAAAGTTGGAT
GCGACCAAAAAACAGAATGTAGATGGcaatgagaaagaggagcttCACAA
GACAAGATCTGAGATAAAAGATATGGAAGACCAAATCAAAAGCCTCAAAA
AACAGCTGGAGCTCGCATCGCAGAAGAGTCCTTCGGATAGTACCCACCAG
CATGAGAAGGCAGCCGCGGGCAGTATTCCTTCATCGAAAAAGGAACCAAA
GAAATCGGAGGTAGTTGACGTTGTCAAGAAACCGCTTTTGACTCGGAAAA
CCGTGTCCGTACCCGAGCCCCAACCGTTAAATCCTTTGTGGGAGGCACGC
TTGCACGCGCTCTTTGACCTCGCTCAGTCGGAcccggcctcccttctctc
caaaCTCGACGATTCCAACGCCGATCCACTGGGCGTGAATGTTGGCGGTC
CGACCAACTTtacttgcccccctcccagcgAGAGATTGACGCAGCCGGAC
CTCCGACGCATAGAAGTGGCCACCCAGTTtcgcggcggccacggctTTGT
GTTCTTCCAGCACCTCAGGAAAGCGGGGGGCACGGGGTTTTGCGACATGG
CGTCACGAAACATGCCCGGGCACGTTCCTTCCTACTACTGCATGCCGGAC
CACCGGGGAACCCTGGCCACGCCTCCATGGACTACCTCTTGGCTGCTGGA
TACGATTGAGGAGAAGAGCTTCCGGATCGCCGCCAACGAGTgggacccct
tcctccgcgcctggTTTGCGATTGGCGATGCCGTCTTCGCCACTACCATA
CGCGATCCCACCGACCGCTGGTACAGCCAATACCGTTTTGAGCACGTGGA
GCATCGGGACGGCACCACCCAAAACAGCGTGCCCAAGCCCTTCGATGTCT
GGTACGGACAGGAGCACTCCCGCAACATGGGCCACAATTACTACGTCAAG
ACGTTCCTGGGCGAGGCCACGGAGACCGAGCCGttgcagaggaaggggcc
gaaCGGGGTCCCTCTCGTTCATGGAAACTTCTACTGGGCATACAACAAGT
ACCAGGCCCGAGTGCTGACCTGGGAGGATTTCCGGATGGCGATGGATACC
TTGCTTCGTTTTCACGTGGTGCTGGTGATGGAATGGTTGGATGAGGCAAA
CGCCACCATGAAAAGCACTCTGGGCTGGACGGAGGCCCCCCGGCAGATCT
TGCCGCATGAGGTCCAGGCGGCgcggcaggagaagaagagtaAATCCGCC
CGGGCTCTGTTGGACAAAAAAGTCTTTGACAGCACACGCGAGGCCAATGT
GCTGGACCACCTCTTTTTCGAAGCGGCCCGACGGATTTTCCTGGAGAGAC
ATGCGTGCGAGAGCGCCTGA

Synonyms

Publications