rna4449, rna4449 (mRNA) Nannochloropsis gaditana

Overview
Namerna4449
Unique Namerna4449
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1035
Alignment locationCM002463.1:619819..620746 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g41.7547.mrna
Orig protein idgnl|cribi|Naga_100025g41.7547
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:619819..620746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g41gene4292Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4449rna4449-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26256.1cds4438Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4449 ID=rna4449|Name=rna4449|organism=Nannochloropsis gaditana|type=mRNA|length=1035bp
CCCGAACCCCATGACATGCCATTATGCTGGTAGTGAATAATGATATAAAT
GAGAACATGTGGCGTTGCTGAGATGTAATGGCCCGCCAAGGGGAAGACCG
CGACATGGCTGGACTGGAGCAAGCTGCCATATGCCTGTCCGCATCTCCTC
TAGCTACTCCCTTACCTACTTATTGTTCATGGCTTCAAGCGCAAGCACAT
AACATATTCACGCTCTCAATGTACAGGCAAAAGAAGTTAGTGAATTGCCG
AAGGAGCCAACGGAAAAAATGTCCACAGTCCTGACCCGAGCCCTTTGCCG
CGTGGCCACCGTGCCCAGGAACATGCGTCGCTTCGCATCCCAAGGAGGCG
ACCACGGCGCTGATGAGGTTGACAAATGGCGCAAGATCTCAATCGTCGCG
ACGGGGGTCGTCATCCTTATGTCTGGCAAAGAGCTCTTGTCCCTATCGTC
TCACGGCCACGGGGAGCACAGCGACAAGCCTTTACCCGATTACATGCACA
TTCGTTCCAAACCATTTCCCTGGGAATGCTCTGATTGCTCCTTGTTCGAC
ACGGACTGCTTCAAGAAATGCAAGTCCGAACGTGCTGGCGAGTTGGTGGA
GGAGCACTGAGGGAACCGGAGGGAAGGTTCGAAAGGAGACGCGTGTTGGA
GTGACCGCGCGCGTATCTCGACGGCTGACAAGGATGCTAAACGTGCATAG
ATATATCTCCCATGCACTCCCATGGTGTCCCGCACGGCCTGACTCCTTTC
TTTCTCGCGTCTTGTAGCTAGGTTATTACAGTCCGTTTGGGGAAAGGGAA
GCAGATGGGTGGAAAGATTTGCTTGTGTCACATTCCACGTGGAGAATTGC
AAGTCCCAAAAACAAAAAGAAGAGAATTGTATGCAAGAGACAGGGTATGA
CGACCGCCTCGTGCCGGGAGATGTGGTCGTTCTGGTCAGTGCGGTGACGT
TTACTTTCTCATGTCGCAAGGCCCCACTACGATTGAAGCCACTGAGCCTA
GTCACGAAAAGAAAGCACAACATATCCTTGTCCGA
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protein sequence of rna4449

>rna4449-protein ID=rna4449-protein|Name=rna4449|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MFFCCSFQLMRLTNGARSQSSRRGSSSLCLAKSSCPYRLTATGSTATSLY
PITCTFVPNHFPGNALIAPCSTRTASRNASPNVLASWWRSTEGTGGKVRK
ETRVGVTARVSRRLTRMLNVHRYISHALPWCPARPDSFLSRVL
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mRNA from alignment at CM002463.1:619819..620746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4449 ID=rna4449|Name=rna4449|organism=Nannochloropsis gaditana|type=mRNA|length=928bp|location=Sequence derived from alignment at CM002463.1:619819..620746+ (Nannochloropsis gaditana)
GTAAGTGATAGCAGAAGTAGACTGGGTTTCACCTGACGACGTCAAGCGTG
ATACTCGTATGACATAAATGATTGAGTACAATTCATTTTGAATATGGTAG
CGTAGCATGGATGTACTCAACGACGGGCTCTCAATCGGTGAATTGGAAAC
CGACATGGGAGAGCTGTCCTCATTTCCAGAGGGTCCTTCTCTGAGGCTGC
TATCACGTATTTACAACTGTTTACCCTTATGTTTTTTTGCTGTTCCTTTC
AGCTGATGAGGTTGACAAATGGCGCAAGATCTCAATCGTCGCGACGGGGG
TCGTCATCCTTATGTCTGGCAAAGAGCTCTTGTCCCTATCGTCTCACGGC
CACGGGGAGCACAGCGACAAGCCTTTACCCGATTACATGCACATTCGTTC
CAAACCATTTCCCTGGGAATGCTCTGATTGCTCCTTGTTCGACACGGACT
GCTTCAAGAAATGCAAGTCCGAACGTGCTGGCgagttggtggaggagcac
tGAGGGAACCGGAGGGAAGGTTCGAAAGGAGACGCGTGTTGGAGTGACCG
CGCGCGTATCTCGACGGCTGACAAGGATGCTAAACGTGCATAGATATATC
TCCCATGCACTCCCATGGTGTCCCGCACGGCCTgactcctttctttctcg
cGTCTTGTAGCTAGGTTATTACAGTCCGtttggggaaagggaagcagaTG
GGTGGAAAGATTTGCTTGTGTCACATTCCACGTGGAGAATTGCAAGTCcc
aaaaacaaaaagaagagaatTGTATGCAAGAGACAGGGTATGACGACCGC
CTCGTGCCGGGAGATGTGGTCGTTCTGGTCAGTGCGGTGACGTTTACTTT
CTCATGTCGCAAGGCCCCACTACGATTGAAGCCACTGAGCCTAGTCacga
aaagaaagcacaACATATCCTTGTCCGA
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Coding sequence (CDS) from alignment at CM002463.1:619819..620746+

>rna4449 ID=rna4449|Name=rna4449|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002463.1:619819..620746+ (Nannochloropsis gaditana)
ATGTTTTTTTGCTGTTCCTTTCAGCTGATGAGGTTGACAAATGGCGCAAG
ATCTCAATCGTCGCGACGGGGGTCGTCATCCTTATGTCTGGCAAAGAGCT
CTTGTCCCTATCGTCTCACGGCCACGGGGAGCACAGCGACAAGCCTTTAC
CCGATTACATGCACATTCGTTCCAAACCATTTCCCTGGGAATGCTCTGAT
TGCTCCTTGTTCGACACGGACTGCTTCAAGAAATGCAAGTCCGAACGTGC
TGGCgagttggtggaggagcactGAGGGAACCGGAGGGAAGGTTCGAAAG
GAGACGCGTGTTGGAGTGACCGCGCGCGTATCTCGACGGCTGACAAGGAT
GCTAAACGTGCATAGATATATCTCCCATGCACTCCCATGGTGTCCCGCAC
GGCCTgactcctttctttctcgcGTCTTGTAG
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Synonyms
Publications