rna4448, rna4448 (mRNA) Nannochloropsis gaditana

Overview
Namerna4448
Unique Namerna4448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1614
Alignment locationCM002463.1:619320..620746 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g41.7546.mrna
Orig protein idgnl|cribi|Naga_100025g41.7546
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:619320..620746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g41gene4292Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4448rna4448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26255.1cds4437Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4448 ID=rna4448|Name=rna4448|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
AAGTTTTCGACAGGCCTACCCAAGCATGCGTGGTGCGGTCTTTTTACTCG
CTATTCTATTTACGTTCGTCAGTTTCACACCTTCCGCGGCAGCTTTTCGC
CCCTCGCCACTTCTTGGTGAGAAATGCTTCATGTTCTCGAGTCAGCCAAG
GCAAGACATAAGACTGCCTTTAAGGTCATCGACTGTACTCTTCTTGGTCA
ACTTTAATTGGGGAGGGTTCCTGCGCCCGAGGGAGAACGATAGGGGAAGA
GTGCCCGAGGCGTCTCTTGATGACGCGTGCCAAGCCAAAGCGCTAGCTTT
CAGTCGGGGGGCCATGACGGCTTCTTCTTTGATCTCATTTTTAAAAAAAT
ATGCAGCCAGTAAGAAGGGTCAGACCCTAGACAAATTGGTGGAAGCGTCG
GCTCAGGTCGTTCCAAACGAGAGCAGGCGGGCTCTGCTTATCAAGACGTA
CGCATCACTCTCCAGCTCCGCGCAAGCAAGCAGTTTGACCAGATTTACAT
CAGCACCTTTTACTTCCCCAAGTGTCTCTGGATTCCTATTAGGAGGCAAG
TATCGTGTGATTAGCACTGGGTCTCAGGGGCCGCGGATAAGTAGTGGGAA
AAGCGCCGTTCTCGACGCCGTCATGGAGGACAACTCTGTAACTGGCAGCC
GGAAAGGGATATCACCTCTTAAGGCCAAGTTAAGTCGAAATTTAGCCGCT
TTACAAAGGGAGAGGAACAATATCATTGCGTTGCGGGGGACCGGTAGCGC
GGCAAAGAAAAGTATTATCGAAGTCTTGGAACTTATGGAAAATTACGACG
GTCGGGGTGGCCATGCCCTCGTCATGGAAGCAGGAAAGGAAGATTTAGTT
GCCAAGATCAAGAGAGATGGAGCATCTTCACGCCAAGAATTGAAAAAAAT
TTGCGCGACTGCCGGGGATGTCCTCCTCGCGTTGGAGAAAAGGAGACTAG
TCTGGACGGACTTGCGAGCGGCAAACTTTGTTTTGATGCAAGGGAGTGGC
GGAGTGAAAGCGATTGATTTGGAAAGTGCTGTCCCTTTGAACGAAAAGCC
AGTTGATTGCACACCTGAAGTGACACCGCCAGAAGTTGCAAGTCTCTATG
TGCAAGGCCGCCTTACTCAAGCCACAGTAGCCCCGAGTTATGACGTGTGG
AGTTTGGGTATTCTGCTCCTCTTTCTGGCTTCTGGAGGAAAGAATTTGTT
CGAAGGCGAAGCATCCAGTCGAGTCATGACCTCATTGGCGTCAGCTACAC
AGGAGAAAGTGGACTTGCAAGTAGACAGGTTGGTGGGAGACACGAAAAGT
GCTGCATTTATTAAGAAACTCCTCGTCGTGGACCCCAAGTCTCGGCTAAG
TGCAGCAGCAGTCAAACGCAACTTGTTATTTTTTTAGAATATATAGTCAG
TGTGTACAGTGTACCATGTAGACTTTAGAATGACTTCACAAAGGTGCTGG
GAACGTGCGAGGGGGGTAATTTAGATGACAAGTGTATGACGACCAACTGA
GGCATCGCCGGTGTTCTACACCATATATTATAACGCTGTCACCGAGTCAA
TTGTGTTGTAGGAAAGTATCTCACCTAAGCATGGTAGGGAAAAAAATAAT
ACTATATTTAGCAC
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protein sequence of rna4448

>rna4448-protein ID=rna4448-protein|Name=rna4448|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MRLTNGARSQSSRRGSSSLCLAKSSCPYRLTATGSTATSLYPITCTFVPN
HFPGNALIAPCSTRTASRNASPNVLASWWRSTEGTGGKVRKETRVGVTAR
VSRRLTRMLNVHRYISHALPWCPARPDSFLSRVL
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mRNA from alignment at CM002463.1:619320..620746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4448 ID=rna4448|Name=rna4448|organism=Nannochloropsis gaditana|type=mRNA|length=1427bp|location=Sequence derived from alignment at CM002463.1:619320..620746+ (Nannochloropsis gaditana)
CCCGAACCCCATGACATGCCATTATGCTGGTAGTGAATAATGATATAAAT
GAGAACATGTGGCGTTGCTGAGATGTAATGGCCCGCCAAGGGGAAGACCG
CGACATGGCTGGACTGGAGCAAGCTGCCATATGCCTGTCCGCATCTCCTC
TAGCTACTCCCTTACCTACTTATTGTTCATGGCTTCAAGCGCAAGCACAT
AACATATTCACGCTCTCAATGTACAGGCAAAAGAAGTTAGTGAATTGCCG
AAGGAGCCAACGGAAAAAATGGTGAGTCTTACGCGTTCAAGGGGTTTCCC
TTTCCGTCAGAGCAGGTCTCTTTGTCGTATACTTTCTCCTATCTCAAATA
TCATGGCACGCATTTTTTTGGCGAAAGATGCACTAGTAACGAATTTTTCA
CCATATGACAGTCCACAGTCCTGACCCGAGCCCTTTGCCGCGTGGCCACC
GTGCCCAGGAACATGCGTCGCTTCGCATCccaaggaggcgaccacGGCGG
TAAGTGATAGCAGAAGTAGACTGGGTTTCACCTGACGACGTCAAGCGTGA
TACTCGTATGACATAAATGATTGAGTACAATTCATTTTGAATATGGTAGC
GTAGCATGGATGTACTCAACGACGGGCTCTCAATCGGTGAATTGGAAACC
GACATGGGAGAGCTGTCCTCATTTCCAGAGGGTCCTTCTCTGAGGCTGCT
ATCACGTATTTACAACTGTTTACCCTTATGTTTTTTTGCTGTTCCTTTCA
GCTGATGAGGTTGACAAATGGCGCAAGATCTCAATCGTCGCGACGGGGGT
CGTCATCCTTATGTCTGGCAAAGAGCTCTTGTCCCTATCGTCTCACGGCC
ACGGGGAGCACAGCGACAAGCCTTTACCCGATTACATGCACATTCGTTCC
AAACCATTTCCCTGGGAATGCTCTGATTGCTCCTTGTTCGACACGGACTG
CTTCAAGAAATGCAAGTCCGAACGTGCTGGCgagttggtggaggagcact
GAGGGAACCGGAGGGAAGGTTCGAAAGGAGACGCGTGTTGGAGTGACCGC
GCGCGTATCTCGACGGCTGACAAGGATGCTAAACGTGCATAGATATATCT
CCCATGCACTCCCATGGTGTCCCGCACGGCCTgactcctttctttctcgc
GTCTTGTAGCTAGGTTATTACAGTCCGtttggggaaagggaagcagaTGG
GTGGAAAGATTTGCTTGTGTCACATTCCACGTGGAGAATTGCAAGTCcca
aaaacaaaaagaagagaatTGTATGCAAGAGACAGGGTATGACGACCGCC
TCGTGCCGGGAGATGTGGTCGTTCTGGTCAGTGCGGTGACGTTTACTTTC
TCATGTCGCAAGGCCCCACTACGATTGAAGCCACTGAGCCTAGTCacgaa
aagaaagcacaACATATCCTTGTCCGA
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Coding sequence (CDS) from alignment at CM002463.1:619320..620746+

>rna4448 ID=rna4448|Name=rna4448|organism=Nannochloropsis gaditana|type=CDS|length=405bp|location=Sequence derived from alignment at CM002463.1:619320..620746+ (Nannochloropsis gaditana)
ATGAGGTTGACAAATGGCGCAAGATCTCAATCGTCGCGACGGGGGTCGTC
ATCCTTATGTCTGGCAAAGAGCTCTTGTCCCTATCGTCTCACGGCCACGG
GGAGCACAGCGACAAGCCTTTACCCGATTACATGCACATTCGTTCCAAAC
CATTTCCCTGGGAATGCTCTGATTGCTCCTTGTTCGACACGGACTGCTTC
AAGAAATGCAAGTCCGAACGTGCTGGCgagttggtggaggagcactGAGG
GAACCGGAGGGAAGGTTCGAAAGGAGACGCGTGTTGGAGTGACCGCGCGC
GTATCTCGACGGCTGACAAGGATGCTAAACGTGCATAGATATATCTCCCA
TGCACTCCCATGGTGTCCCGCACGGCCTgactcctttctttctcgcGTCT
TGTAG
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Synonyms
Publications