rna4445, rna4445 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4445
Unique Name	rna4445
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1395
Alignment location	CM002463.1:608826..611764 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100025g46.7532.mrna
Orig protein id	gnl\|cribi\|Naga_100025g46.7532
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:608826..611764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g46	gene4289	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4445	rna4445-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26241.1	cds4434	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:608826..611764+
coding sequence from alignment at CM002463.1:608826..611764+

mRNA sequence

>rna4445 ID=rna4445|Name=rna4445|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
ATGGCAGAGAGCCAGCGGGGTCCGAGTCCCTTCTTTTTGTGCTGGCGCGA
GCTTCCATGGCTTATCATGTGTGACGATGTTTGAGATGATTCCAGCAAAT
TTTCTACGGGAGTGACGGATATTGCTGTCACCCTAGCACTTTACCGCAAG
TCCTGTAGAAATCTCCCGCTGCCATCCAACCTTCTGCCTTGCCGGCAGCA
CGCTGGGCTATCAAGGAAGGACTTTTTGTGATGGATAAGGCGCAAGACTG
TGGTCTTCGTGGCTCACAAAGGCATGAATGTTTCAATCTTAAAACATCGG
TTTGCTAAATTTTATTCTTCTCTGTGGTTGTGACCCTACGGAGGACGAGA
GTCTCCCTTCGCCCTACTCCATCGCCTTCTTGCCTCTGGACGAAAGGGTG
GGAAATAAGTGTACACGGCAACATCCTGTACAGACGAGCGTACTTGTCGC
ATTATCGAGTACTTAGCCCGCTCACTGCAAATATTTGTTTCATCCTCGCC
CTCCTTCGCGTTGATACATAAACAGCCATGCAAATTTTCGTTAAGACCCT
GACGGGCAAGACCATTACTTTGGACGTGGAGCCCAGCGACACCATTGAGA
ATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAGCAG
CGCCTCATTTTTGCCGGCAAGCAGCTCGAGGATGGGAGGACACTCAGCGA
CTACAACATTCAGAAGGAGTCCACCCTACACCTGGTACTACGCTTGCGTG
GAGGTGGCAAAGTGCACGGCTCCTTGGCGCGTGCCGGTAAGGTGAAGGGC
CAGACGCCCAAGGTGGAAAAGCAGGAGAAGCGCAAGACCCCCCGGGGCCG
GGCAAAGAAGCGCGTGCTCTACTCCCGTCGCTTTTTGAACGTGGCCACCG
GGGTGGGCGGCAAGCGGTTGGGGCCCAACAGGTGGGTAGGCAGAGAGGGT
GAGGGCATTTGGCAAAGACGGTGTGGCAGACATGAATGTGAGGCGGGGAT
TGGAAAGGTGCTCAACAATCTGGGGGTGTGCTTACATCACGCCCTATGCA
CATAATCACACAGCAACGCCGACAAGATGCAGAAGTAAAATACTATGGAA
CGTATAGGAGGGATAGTGCACGTACCACTGACTTCAACATGCGTGTATGC
GACGGGAAGGACAAAAGACGCGGCCTGTTTGCATCCTGGGTGGATGAGGG
GTGGGAAGTGTTTGTGCTCACAGATTTGAAAGAAATCTTGAAGGAAACAT
AACATCTCTCCATACGTTTGATTTGATGTTGTCGTCTGTCCCTATCTATG
CATTGGTCGCCCCCTAGCGATTCTCTCCATGGCACAGATCCAGGAAAGTC
ACGAAAACTAGCGACTCCTGACCAAACTCGGCACACAACCTCTTC

protein sequence of rna4445

>rna4445-protein ID=rna4445-protein|Name=rna4445|organism=Nannochloropsis gaditana|type=polypeptide|length=814bp
MTLPRAEPSLANLPYMSSLLSGSLRQEKQQLHHDYRDHRDDAPPFFGASS
TSTSPLRSIDRSKAPSNTGLNSVHHRYQCGDAPSIASYSPTHPHSVPSRP
HLLDDSVPPASADPPLYDSSRLQSLIMSKEKELHDINQFRIHTLESLLKD
RERALKENNDKIQGLKADFQYNLQLIEERDAELDRADATVAKLEDTVRAQ
AHESEALRQALAEAEQGSKRQAARIAADMEAAFARREQEMGQAAAEQGRK
QEEELSRQHRAHIESLRQEWESEWLAKEEAWRERVDRLGEETSRMERERA
AREQAVARGAELEAALQEQRGKFSALAAENKELRGHMHRLAARHEERMEE
LLRTLRAAETALEESQREAAAANASKERAHEQAIRDAVHKGEMRLSAAKD
EVARAEERAGRADQALREVRREMEERMATRLREEDAREGLHAQEVERKEA
LLVKMKSQLWESEAEGRELTMRVGDLGKRIEEKDRELVRTREQLEQFRTL
LVEERQESERRVAEEGQGRHPGGKTVEVEELKAELRASQREASTLRARAA
DLEDVARRSTPKGDERAARQQEAVLDDTLAARRTASLVEEGALVQENVRL
RTIISDMRHEMERLTLADKGGRARSGQGRGQGGDREDHATAAGDEAVGVS
IPFAATSTEGKLGNMLLSENRRLREENKKLSGTCEKLMGMSNELNARLNK
LSTWTLQGGVEEARGIDGMEKGPVRAKGGKPRSLHRTDSPPPSAQASSRE
ASLSIAGRSAAVATSKADYQAPGSFLASARETQGQKNALNRLRSRTAASG
VAALRQKVRNYNER

mRNA from alignment at CM002463.1:608826..611764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4445 ID=rna4445|Name=rna4445|organism=Nannochloropsis gaditana|type=mRNA|length=2939bp|location=Sequence derived from alignment at CM002463.1:608826..611764+ (Nannochloropsis gaditana)
CGTATTCGCTGCACGTCAAGCTGCTGAACCAGACTTGTTACTAGGACCCG
TTCCAATTTTGCAGGCTGATGAAATTGAAATATATGTTTGGCACGTTCTA
AAAGTTGCATATCATCACGCGCTGTAATGACCGTTAAACGAGCATGGTCC
TTGCCTCAGCGATGTGGTCGTTTAAAAGGGTTTCGTAACAGCATGGCCCA
CCTACCGGGCGCGTAAACGTGATCAATTCTGCCGCTTCATCATAACAGGG
GACattccatccttccttttGCGGCGCAAAAGGTCAGCTGATGACCCTAC
CTCGAGCAGAACCCTCCCTTGCCAACCTCCCGTACATGTCCTCTCTTCTC
TCGGGCTCCCTGCGGCAAGAAAAGCAGCAGCTCCATCACGACTACCGCGA
CCACAGAGATGACGCGCCCCCTTTTTTCGGTGCCTCCTCTACTAGTACAT
CTCCCCTTCGTTCTATCGATCGCAGTAAGGTGCGCACATTCCAATTTCCT
CAAGCACACCTCCTTCATGCTCAGAGTCTGATTCCCCCTCCACATTTCGT
CTTCCTTACAGGCGCCCTCCAACACGGGTTTAAATTCTGTCCATCACCGT
TATCAATGCGGTGACGCTCCATCAATCGCCTCGTACTCCCCAACGCATCC
GCACTCGgtgccctcccgcccgcatCTCCTTGACGActccgtccctcctg
cctccgccgaCCCCCCCCTGTACGATTCCAGCCGTTTGCAGAGCTTGATC
atgagcaaggagaaggagcttcACGACATCAATCAATTTCGTATCCACAC
TCTCGAGTCCTTACTGAAAGACCGGGAGCGCGCCCTGAAAGAAAACAACG
ACAAAATTCAAGGCCTAAAAGCAGATTTTCAGTATAACCTGCAGCTCATC
GAAGAGCGGGATGCTGAGCTCGACAGGGCTGACGCCACGGTGGCCAAGCT
GGAAGACACCGTGCGAGCGCAAGCCCATGAGAGTGAGGCCTTGAGGCAGG
CGCTTGCGGAGGCGGAACAAGGGAGCAAGCGGCAAGCGGCTCGAATCGCG
GCGGACATGGAAGCCGCCTTCGCCCGGCGCGAGCAGGAGATGGGCCAGGC
AGCCGCCGAGCAGGGCCGTaaacaggaagaggaactgTCGCGTCAGCATA
GAGCGCACATCGAGTCCCTGAGGCAAGAGTGGGAGAGCGAGTGGCTCGCC
AAGGAAGAAGCTTGGCGAGAAAGGGTCGATCgtctgggggaggagacgag
ccggatggagagagagagggcagcCCGCGAGCAAGCGGTGGCCCGAGGCG
CGGAGCTGGAAGCCGCCCTCCAGGAGCAGCGTGGGAAATTTTCGGCTTTG
GCCGCAGAGAATAAGGAGCTGCGGGGCCACATGCATCGCTTGGCGGCACG
GCACGAGgagcggatggaggagctgTTGAGGACCTTGCGGGCTGCCGAga
cggccttggaggagagccagcgggaggcagcggctgcCAATGCCTCTAAA
GAGCGGGCGCATGAGCAGGCAATTCGAGATGCTGTGCACAAGGGGGAGAT
GAGGCTGTCTGCGGCCAAGGACGAAGTCGCCCGGGCCGAGGAGCGCGCTG
GGAGAGCCGACCAGGCCCTCCGGGAGGTGCggcgggagatggaggagagg
atggccaccaggctgcgggaggaggacgcgagggagggtctgCACGccca
ggaggtggagaggaaggaggcgctcCTTGTCAAAATGAAATCTCAGCTGT
GGGAGTCGGAGGCTGAGGGACGCGAGCTGACCATGCGGGTGGGGGACCTG
GGGAAGAGAATTGAGGAGAAAGATAGGGAGCTGGTACGAACAAGGGAACA
GCTGGAGCAATTTCGGACGTTGTTGGTAGAGGAGCGACAGGAATCGGAGC
GCCgagtggcggaggagggacaggggagacATCCCGGAGGAAAGACGGTG
GAGGTTGAAGAATTGAAGGCAGAGCTTCGCGCGAGTCAAAGAGAGGCGTC
GACTTTGCGGGCTCGCGCGGCAGATTTAGAGGACGTTGCGCGGCGATCCA
CTCCGAAGGGGGATGAACGAGCCGCGAGGCAGCAGGAAGCGGTGTTGGAT
GACACACTggcggcaaggaggacggcttccctggtggaagaaggagcttT
GGTGCAAGAAAACGTCCGGTTGCGGACGATCATATCCGACATGCGCCATG
AAATGGAGCGTCTCACGCTagcggacaagggagggagggctcggaGTGGA
CAAGgccgggggcagggaggggaccgGGAGGATCATGCCACTGCCGCAGG
AGACGAGGCCGTGGGAGTGTCCATCCCCTTTGCCGCGACCTCGACGGAGG
GAAAACTCGGCAACATGCTGCTTTCAGAGAATCGACGCCtgcgggaggaa
aacaagAAGCTCTCGGGCACTTGTGAGAAACTCATGGGTATGAGCAACGA
GCTGAACGCGCGCTTGAATAAGCTATCGACTTGGACTCTCCAGGGGGGGG
tcgaggaggcaagaggcatcgatgggatggagaaggggccAGTGCGGGCA
AAGGGTGGGAAGCCACGGTCGTTGCATCGCACagattctcctcctccttc
cgcccagGCGTCTTCACGAGAGGCATCCCTGAGCATAGCAGGCCGGTCTG
CTGCTGTGGCCACCTCCAAGGCAGATTATCAGGCTCCCGGCTCGTTTTTA
GCCTCGGCACGGGAGACACAGGGGCAAAAAAATGCCCTCAACCGCCTCAG
AAGTCGGACAGCGGCATCCGGTGTGGCCGCACTGAGGCAGAAGGTGCGAA
ATTACAATGAGCGATGAAGCTACAGCGATGTCAATCTTTATAGAATGCTA
CGAGCTGGGGTAGCAAAATTGACGGTAAAGCACAGCCTTAAATGTTTGAG
ATTTGTTCAGTGTCGAAACAATGTACAAAAATTGAGACT

Coding sequence (CDS) from alignment at CM002463.1:608826..611764+

>rna4445 ID=rna4445|Name=rna4445|organism=Nannochloropsis gaditana|type=CDS|length=4890bp|location=Sequence derived from alignment at CM002463.1:608826..611764+ (Nannochloropsis gaditana)
ATGACCCTACCTCGAGCAGAACCCTCCCTTGCCAACCTCCCGTACATGTC
CTCTCTTCTCTCGGGCTCCCTGCGGCAAGAAAAGCAGCAGCTCCATCACG
ACTACCGCGACCACAGAGATGACGCGCCCCCTTTTTTCGGTGCCTCCTCT
ACTAGTACATCTCCCCTTCGTTCTATCGATCGCAGTAAGGCGCCCTCCAA
CACGGGTTTAAATTCTGTCCATCACCGTTATCAATGCGGTGACGCTCCAT
CAATCGCCTCGTACTCCCCAACGCATCCGCACTCGgtgccctcccgcccg
catCTCCTTGACGActccgtccctcctgcctccgccgaCCCCCCCCTGTA
CGATTCCAGCCGTTTGCAGAGCTTGATCatgagcaaggagaaggagcttc
ACGACATCAATCAATTTCGTATCCACACTCTCGAGTCCTTACTGAAAGAC
CGGGAGCGCGCCCTGAAAGAAAACAACGACAAAATTCAAGGCCTAAAAGC
AGATTTTCAGTATAACCTGCAGCTCATCGAAGAGCGGGATGCTGAGCTCG
ACAGGGCTGACGCCACGGTGGCCAAGCTGGAAGACACCGTGCGAGCGCAA
GCCCATGAGAGTGAGGCCTTGAGGCAGGCGCTTGCGGAGGCGGAACAAGG
GAGCAAGCGGCAAGCGGCTCGAATCGCGGCGGACATGGAAGCCGCCTTCG
CCCGGCGCGAGCAGGAGATGGGCCAGGCAGCCGCCGAGCAGGGCCGTaaa
caggaagaggaactgTCGCGTCAGCATAGAGCGCACATCGAGTCCCTGAG
GCAAGAGTGGGAGAGCGAGTGGCTCGCCAAGGAAGAAGCTTGGCGAGAAA
GGGTCGATCgtctgggggaggagacgagccggatggagagagagagggca
gcCCGCGAGCAAGCGGTGGCCCGAGGCGCGGAGCTGGAAGCCGCCCTCCA
GGAGCAGCGTGGGAAATTTTCGGCTTTGGCCGCAGAGAATAAGGAGCTGC
GGGGCCACATGCATCGCTTGGCGGCACGGCACGAGgagcggatggaggag
ctgTTGAGGACCTTGCGGGCTGCCGAgacggccttggaggagagccagcg
ggaggcagcggctgcCAATGCCTCTAAAGAGCGGGCGCATGAGCAGGCAA
TTCGAGATGCTGTGCACAAGGGGGAGATGAGGCTGTCTGCGGCCAAGGAC
GAAGTCGCCCGGGCCGAGGAGCGCGCTGGGAGAGCCGACCAGGCCCTCCG
GGAGGTGCggcgggagatggaggagaggatggccaccaggctgcgggagg
aggacgcgagggagggtctgCACGcccaggaggtggagaggaaggaggcg
ctcCTTGTCAAAATGAAATCTCAGCTGTGGGAGTCGGAGGCTGAGGGACG
CGAGCTGACCATGCGGGTGGGGGACCTGGGGAAGAGAATTGAGGAGAAAG
ATAGGGAGCTGGTACGAACAAGGGAACAGCTGGAGCAATTTCGGACGTTG
TTGGTAGAGGAGCGACAGGAATCGGAGCGCCgagtggcggaggagggaca
ggggagacATCCCGGAGGAAAGACGGTGGAGGTTGAAGAATTGAAGGCAG
AGCTTCGCGCGAGTCAAAGAGAGGCGTCGACTTTGCGGGCTCGCGCGGCA
GATTTAGAGGACGTTGCGCGGCGATCCACTCCGAAGGGGGATGAACGAGC
CGCGAGGCAGCAGGAAGCGGTGTTGGATGACACACTggcggcaaggagga
cggcttccctggtggaagaaggagcttTGGTGCAAGAAAACGTCCGGTTG
CGGACGATCATATCCGACATGCGCCATGAAATGGAGCGTCTCACGCTagc
ggacaagggagggagggctcggaGTGGACAAGgccgggggcagggagggg
accgGGAGGATCATGCCACTGCCGCAGGAGACGAGGCCGTGGGAGTGTCC
ATCCCCTTTGCCGCGACCTCGACGGAGGGAAAACTCGGCAACATGCTGCT
TTCAGAGAATCGACGCCtgcgggaggaaaacaagAAGCTCTCGGGCACTT
GTGAGAAACTCATGGGTATGAGCAACGAGCTGAACGCGCGCTTGAATAAG
CTATCGACTTGGACTCTCCAGGGGGGGGtcgaggaggcaagaggcatcga
tgggatggagaaggggccAGTGCGGGCAAAGGGTGGGAAGCCACGGTCGT
TGCATCGCACagattctcctcctccttccgcccagGCGTCTTCACGAGAG
GCATCCCTGAGCATAGCAGGCCGGTCTGCTGCTGTGGCCACCTCCAAGGC
AGATTATCAGGCTCCCGGCTCGTTTTTAGCCTCGGCACGGGAGACACAGG
GGCAAAAAAATGCCCTCAACCGCCTCAGAAGTCGGACAGCGGCATCCGGT
GTGGCCGCACTGAGGCAGAAGGTGCGAAATTACAATGAGCGATGAATGAC
CCTACCTCGAGCAGAACCCTCCCTTGCCAACCTCCCGTACATGTCCTCTC
TTCTCTCGGGCTCCCTGCGGCAAGAAAAGCAGCAGCTCCATCACGACTAC
CGCGACCACAGAGATGACGCGCCCCCTTTTTTCGGTGCCTCCTCTACTAG
TACATCTCCCCTTCGTTCTATCGATCGCAGTAAGGCGCCCTCCAACACGG
GTTTAAATTCTGTCCATCACCGTTATCAATGCGGTGACGCTCCATCAATC
GCCTCGTACTCCCCAACGCATCCGCACTCGgtgccctcccgcccgcatCT
CCTTGACGActccgtccctcctgcctccgccgaCCCCCCCCTGTACGATT
CCAGCCGTTTGCAGAGCTTGATCatgagcaaggagaaggagcttcACGAC
ATCAATCAATTTCGTATCCACACTCTCGAGTCCTTACTGAAAGACCGGGA
GCGCGCCCTGAAAGAAAACAACGACAAAATTCAAGGCCTAAAAGCAGATT
TTCAGTATAACCTGCAGCTCATCGAAGAGCGGGATGCTGAGCTCGACAGG
GCTGACGCCACGGTGGCCAAGCTGGAAGACACCGTGCGAGCGCAAGCCCA
TGAGAGTGAGGCCTTGAGGCAGGCGCTTGCGGAGGCGGAACAAGGGAGCA
AGCGGCAAGCGGCTCGAATCGCGGCGGACATGGAAGCCGCCTTCGCCCGG
CGCGAGCAGGAGATGGGCCAGGCAGCCGCCGAGCAGGGCCGTaaacagga
agaggaactgTCGCGTCAGCATAGAGCGCACATCGAGTCCCTGAGGCAAG
AGTGGGAGAGCGAGTGGCTCGCCAAGGAAGAAGCTTGGCGAGAAAGGGTC
GATCgtctgggggaggagacgagccggatggagagagagagggcagcCCG
CGAGCAAGCGGTGGCCCGAGGCGCGGAGCTGGAAGCCGCCCTCCAGGAGC
AGCGTGGGAAATTTTCGGCTTTGGCCGCAGAGAATAAGGAGCTGCGGGGC
CACATGCATCGCTTGGCGGCACGGCACGAGgagcggatggaggagctgTT
GAGGACCTTGCGGGCTGCCGAgacggccttggaggagagccagcgggagg
cagcggctgcCAATGCCTCTAAAGAGCGGGCGCATGAGCAGGCAATTCGA
GATGCTGTGCACAAGGGGGAGATGAGGCTGTCTGCGGCCAAGGACGAAGT
CGCCCGGGCCGAGGAGCGCGCTGGGAGAGCCGACCAGGCCCTCCGGGAGG
TGCggcgggagatggaggagaggatggccaccaggctgcgggaggaggac
gcgagggagggtctgCACGcccaggaggtggagaggaaggaggcgctcCT
TGTCAAAATGAAATCTCAGCTGTGGGAGTCGGAGGCTGAGGGACGCGAGC
TGACCATGCGGGTGGGGGACCTGGGGAAGAGAATTGAGGAGAAAGATAGG
GAGCTGGTACGAACAAGGGAACAGCTGGAGCAATTTCGGACGTTGTTGGT
AGAGGAGCGACAGGAATCGGAGCGCCgagtggcggaggagggacagggga
gacATCCCGGAGGAAAGACGGTGGAGGTTGAAGAATTGAAGGCAGAGCTT
CGCGCGAGTCAAAGAGAGGCGTCGACTTTGCGGGCTCGCGCGGCAGATTT
AGAGGACGTTGCGCGGCGATCCACTCCGAAGGGGGATGAACGAGCCGCGA
GGCAGCAGGAAGCGGTGTTGGATGACACACTggcggcaaggaggacggct
tccctggtggaagaaggagcttTGGTGCAAGAAAACGTCCGGTTGCGGAC
GATCATATCCGACATGCGCCATGAAATGGAGCGTCTCACGCTagcggaca
agggagggagggctcggaGTGGACAAGgccgggggcagggaggggaccgG
GAGGATCATGCCACTGCCGCAGGAGACGAGGCCGTGGGAGTGTCCATCCC
CTTTGCCGCGACCTCGACGGAGGGAAAACTCGGCAACATGCTGCTTTCAG
AGAATCGACGCCtgcgggaggaaaacaagAAGCTCTCGGGCACTTGTGAG
AAACTCATGGGTATGAGCAACGAGCTGAACGCGCGCTTGAATAAGCTATC
GACTTGGACTCTCCAGGGGGGGGtcgaggaggcaagaggcatcgatggga
tggagaaggggccAGTGCGGGCAAAGGGTGGGAAGCCACGGTCGTTGCAT
CGCACagattctcctcctccttccgcccagGCGTCTTCACGAGAGGCATC
CCTGAGCATAGCAGGCCGGTCTGCTGCTGTGGCCACCTCCAAGGCAGATT
ATCAGGCTCCCGGCTCGTTTTTAGCCTCGGCACGGGAGACACAGGGGCAA
AAAAATGCCCTCAACCGCCTCAGAAGTCGGACAGCGGCATCCGGTGTGGC
CGCACTGAGGCAGAAGGTGCGAAATTACAATGAGCGATGA

Synonyms

Publications