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Properties
| Property Name | Value |
|---|
| Product | meiotic recombination protein spo11 isoform 2 |
| Orig transcript id | gnl|cribi|Naga_100025g52.7501.mrna |
| Orig protein id | gnl|cribi|Naga_100025g52.7501 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:593292..595458 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4440 ID=rna4440|Name=rna4440|organism=Nannochloropsis gaditana|type=mRNA|length=2778bp
GTGTCATCCTCGCAAGAACGCTCTGGTGCATTCCATCGGTCAACAAGAGT
GCTTTGAACCGTAGAAATGCCGACACATGATTTTTAAAAAGTCTTTCCTT
GTCAACCTCGTTACTTTTCGAATGCAGAAAGTCGAAGAACAGTGAAGCCA
GCGCAAACGTGACATTTTCGAAGGCAACTTGGGTTTTCCACGCGAGGCTT
GATCATGAGTTGGGGACGATCGCCACCACAGAACTTTGGTGCGCTGGGTC
GCTCACCGTTTAAGAGCTCATCTCCCCGACCATTGGGGCCAGGTGAAGGC
AGCGGCCACGGGCCTGCAGGCGGTAGCAGCAGCAGGGAGGATGCCCGCGG
TGAAGGTGGGAGTGCACACGGCACGGACTGGACCCTGTTGGACCAGCGCG
GCACAAGGGGCCCTGCATCGTGCTCTCCGTCGTCGTCCTCGGCGTCCAGA
GAATTTCTCTCCATGGCGGAGCACCGGCGGCGGTCGATGAGCCTGGACAT
CCCCCGCGGCCAACACCACAGCAGCAGTCAGGCACCCAAGACGTCTCAGC
AGCTGCTTCAACCTCAGCACAGCAATTACCACGGACATCACCGCTCGTCA
ACTATCACACACAGTAGCAGTCCTGGTAACATCCTGTCCTTGGCGCGGGA
TTTCTCGGGGTTGAGTGCTGGAATGAGAGGCACGCCCCCGCCGGCGCCCG
GCCACCCGATGCACACGGACCGGAGCAGCAGTGGGGTCGGCAGCAGCTTG
GGAATGATGGAGGGCAGTGGGAGTGGGAGTGGAAGCACTGGTGGGAGTGT
CGGAGGGAGCGGGAGTGGGGTGGCGCGCAGCGGTGCGGCCTCTTCCTCCC
CCTCGACCTCCGTCGCCTCCACCTCGGAGACGGCGACCGTGACAGGTGTC
GCGGGGACGAGCACATCCGAGTCGCATTTGCAGCGGCAATTTCGTGCCCG
TTTGGATGAAGCAGAGCAGCAGGCGGCCTACTGGCAGGCGCGGGCCAAGG
AAGCGGAGCACGCGAGCGGGAAGAGCCAGAGGGATTGCATCTCTTTGCGC
TCCCAATTGAGCGCTCAACAGGGCACGGCCGTCTCGCGGGGCGAGGTGCT
TGCCTCCATGTACGCAAGGGTGGAACGGATTATGGTCGGGCTCGGGATGG
ACGTCGCGGCCCTCCCTGCCGTGGCAAGCAAGGAGGCGATCGGTGGGTGT
GCTTCCACAGGGGCGGGGGGGAAGGAGGGCGGGACCGGAGGGGGAAGGAG
GGCCCAGACATCTGTGTTGGAGAGCATCGAGCTCGGCTTGATGGCGCTGG
AGAAGCAGTTGCTGCCGCTGGGCAAAAGGACCCAAAAAACCGGAGACCTC
GGCGGCAGGGATGCTGCTCCGGTTTTGCCTCCTCCCTCCCCGTCGCCGTC
CAACCCCTCCTCCCCACCTTCCTTCGTCATCCATTTCCAGCGCTTCGCCC
TCGGGCACGTGGCCCTATTTTTCCCCACCCCGGCGGGCGACTACCTGGCT
TTCAACGTGGGCTGCCCGCACTACTACCTTTCGGAGGACGCCAAGGCTTG
GATAGGGAGGGACCGGCATTTTCGGAAGTACTACGTGCTGGGCAGGATCA
CCAGGCTGGTCAAGTGTCAGGTCCCCACCGTGGAGGAGGAAGAGGGCAGG
GTGGGAGAAGGGGAGGGCGAGGCAAAGGCGACTCCCTTCAGCCTGGCTCC
AGGGACCAGGTACGCCGTGGTTTCGGTGGAGCCCATCAAGGGACTGAGCG
AGTCTGTGAGCCTCGGCAGTGCCGGCAGCAGCAGCGACACGAAAGCGAAC
AGAGCCGGCGTGTCGTCCAGAGAAAAATCGTGAGATAAGGGACCAAAGTA
CGCCACGCATGGTCGCGCCCAGAGTAGGACCCGACACGCTTTGTATGAAA
TTTTGGAGGCTTCCTCGGTCATCGTAGAGTAACACCTCGGAAAGCCACCT
TGTTGCATTTGTAGATTTCATCGAAAAAAACAGGAATGTAGGATATTGAA
ACCGGTTCTTCAGCGGTGTATATGAATAGAACATGAACTTGTGTACGAGT
GCATGCATAAGCGAGGGGAATTCTTCATAGTCCTTGTGCAGAAAGATGCA
CGTTACAGAGACGAAGACCCAAGAAGGGCTCAAAATTACCCTTTTCGGGC
AACCAGCACCCGAGCGATGCTTTCTCCTTACCAGTGGTAAGGGCAACTGT
TGCGCGACACGAGGAGCGTCATTCGTGTATCACGTTCACACGGCAAACGC
AAAATGTACTCATATTGAAGGGAGGGAGGTTGTCACGTGACGGCAGCTGT
CCATCCTGAAGGTAAATTAACTGGCTCTTATTATCTCGGACATGTTCACA
AAGGAGGTTGTAGCATAGATGTGAATATACAGGTGTTATGTTCTGGTTTC
CTGCGTCGTCTTTTTATTCAGTACGCCTTAACCATCACAATTGAGCCCTG
CTGAACGGCCATGGTCGGGAAAAGTAGCACAAGGACGCCAAGTTTTTGGC
CGAATATGCGTCGCGGGCTGCCTTGCTCGTCATCGGTCACGAATGACGCT
AGACTGGGCATATACGGGCTCAAAAATGCAGAGTGTGCGGACGGCGTGTT
TGGCATTCGTGTTCATGTTCATTCTGGAAACCACATCAGTTACAGCACAT
TTAAAAAATAACGCACTGAATGTGTACAAAGAGAAAAGCCAACGGTAGGC
ACGAAGTATTTTCATCTTGCTTTACCCAGGCTCTTAACGTTATTTAACTT
CCACATCATGGTCAAAAATCCGAACAGT back to topprotein sequence of rna4440 >rna4440-protein ID=rna4440-protein|Name=rna4440|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MEFTFTHDAEAFATPADKMQAREFLELPSYAAAFYSSNHPPFPPTSPVAQ
PSSLLTSANGKHNDDLSSSTSSFPNTTPFPARIDQSSHDASGVTHDIARE
EVIGRIEEFICAWIATLSDNDISEPPTFEVRRRTKANSIYYPGERKNGES
CQQLPGLKQGDGVVIKKLSEGGRGSARSYAAIFAILAFSHRILLSNQMAT
SREVWYNYKASHSCFKCQADCDRAVLDAASLLGVARHQLGIVGAAKGLMA
GHFRFRVWGSGRAWNECDGGGGDGEGGLGCGGTLIDSCWITDVMEVECLG
KHRPRYIVVVEKECMFKRLIGDGLLGQAGGIVLITGKGYPDLATRACVKA
LVDAFAVPVVGLCDCNPHGIALLLTYKCGSFRMPESQAYRIPLCWLGLRP
SQLKRRFDLPDDTFQAFSEGDISKCSSLMDSPFCQAHLPWREEVETMASE
HLKCELEALNTFSGSKGRRDFLSQYVVSALLSGDYLT back to topmRNA from alignment at CM002463.1:593292..595458- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4440 ID=rna4440|Name=rna4440|organism=Nannochloropsis gaditana|type=mRNA|length=2167bp|location=Sequence derived from alignment at CM002463.1:593292..595458- (Nannochloropsis gaditana)
GGGGGTAGGAGGTTAATTTTTCATGGAGTTTACGTTCACTCATGATGCAG
AGGCCTTCGCGACTCCCGCAGACAAGATGCAAGCTCGTGAATTTCTGGAG
CTCCCTTCATATGCAGCTGCCTTCTATTCTTCAAACCATCCTCCTTTTCC
TCCTACTTCTCCTGTTGCTCAACCTTCCAGCCTCCTCACCTCAGCAAACG
GCAAGCACAACGACGATTTATCTTCGTCGACTTCTTCATTTCCCAATACC
ACTCCCTTTCCTGCTAGAATTGATCAATCTTCTCATGATGCAAGCGGTGT
CACCCATGACATTGCAAGAGAAGAAGTGATTGGCCGAATCGAGGAGTTCA
TTTGCGCCTGGATAGCGACACTCAGCGACAACGACATATCTGAGCCCCCC
ACTTTTGAGGTCCGTCGACGCACAAAGGCAAATTCAATTTACTATCCAGG
GGAGAGAAAAAATGGAGAGTCATGTCAACAACTTCCCGGACTGAAACAAG
GGGATGGAGTGGTGATCAAGAAGCTTTCCGAAGGTGGAAGAGGTTCTGCT
CGTTCATACGCCGCAATATTTGCCATTTTGGCATTTTCTCATCGGATTTT
GCTGTCAAATCAAATGGCTACCAGTCGAGAAGTGTGGTACAACTACAAGG
CATCGCATTCATGCTTCAAGTGTCAGGCAGATTGTGATAGAGCAGTCTTG
GATGCTGCTTCACTGCTGGGTGTGGCAAGGCACCAGTTGGGAATTGTAGG
TGCAGCTAAAGGTCTAATGGCCGGGCATTTTCGATTCCGTGTTTGGGGAA
GTGGGAGAGCATGGAACGAGTGTGATGGGGGTGGTGGAGACGGGGAAGGG
GGCCTCGGCTGTGGCGGTACACTGATCGACAGTTGTTGGATCACGGATGT
GATGGAGGTGGAGTGCCTCGGTAAACATCGTCCCCGCTATATTGTGGTCG
TTGAGAAGGAGTGTATGTTCAAGCGGCTAATTGGTGATGGCTTGCTAGGA
CAGGCGGGAGGCATTGTTCTTATCACTGGAAAAGGCTACCCAGATTTGGC
GACGCGGGCGTGCGTAAAGGCGCTAGTCGACGCATTTGCCGTGCCGGTGG
TGGGACTTTGCGATTGCAATCCGTACGTGAGAAACTTTGCGCCCTGATTT
TCCAGTAGAGGCTTAACTACCCGCCTTGTTTCATTTTTCTTGATTTCTTC
CCTCATCTTTCCAATTCGTTATCATCGATATATGTACAGTCACGGCATTG
CTCTCCTTCTGACATACAAATGTGGATCTTTCCGTATGCCTGAGTCGCAA
GCCTACCGTATTCCCTTATGCTGGCTAGGCCTGCGTCCCTCGCAGCTTAA
GCGACGCTTTGACCTTCCCGACGACACCTTTCAGGCCTTTTCCGAAGGTG
ATATCAGTAAGTGCAGCTCATTGATGGACTCACCGTTCTGTCAAGCGCAT
TTACCATGGAGAGAGGAGGTAGAAACGATGGTACGTGGGCAGTCGATTAT
ATTTGTGTAAGGTCTCCAATGTCGTCAATCAGCTCACCTCGTTCACTTCC
CACAGGCTTCCGAGCACCTGAAATGTGAACTAGAGGCATTGAACACTTTC
TCAGGAAGCAAGGGTCGACGGGATTTTTTGAGCCAGTACGTTGTCTCGGC
CTTGCTCTCTGGTGATTATCTGACGTAGTAAGTGTCCTGAAATAGGCTTG
CAATTATACAGTGCGGGAATTCTTAATACGCAAAGTTCCATCCGACTGAG
CTGAATTTACCAACGTTACCCAAAAAAGTAGAGCGTAGGTGAAGGTGCGA
TGACAAAAATCGACATTCAGCGTGTTCATGTCAAGACCCCTTCCATGTCT
TTTCCAGCGTGAGACATGTCTCGCTTCAAAGCTCACACATAAGTCCCCCA
ATGAATAAGTGTCTTACTTGATCAAGATATCTTGTATCGTTGGGAGGTGA
CAGTATGGCTCCAAAATGAGTTTCGTCAAAAGAAGCATTCTGGTGGCGGG
GGAAAAATGGGCCGCGGGCCCAAGCTTCATGAGATTGCTCACGTGACCGT
GAGTCTACCCCCCTTTATTACGGCCATCCCACCTCTTTAAATATAATCGA
GTGCTTTTACTCTATCACCACAAATTTGACACATCATTTGTAATCGGCAC
GCGCACCTCTTGCCACC back to topCoding sequence (CDS) from alignment at CM002463.1:593292..595458- >rna4440 ID=rna4440|Name=rna4440|organism=Nannochloropsis gaditana|type=CDS|length=4392bp|location=Sequence derived from alignment at CM002463.1:593292..595458- (Nannochloropsis gaditana)
GCTTCCGAGCACCTGAAATGTGAACTAGAGGCATTGAACACTTTCTCAGG
AAGCAAGGGTCGACGGGATTTTTTGAGCCAGTACGTTGTCTCGGCCTTGC
TCTCTGGTGATTATCTGACGTAGTCACGGCATTGCTCTCCTTCTGACATA
CAAATGTGGATCTTTCCGTATGCCTGAGTCGCAAGCCTACCGTATTCCCT
TATGCTGGCTAGGCCTGCGTCCCTCGCAGCTTAAGCGACGCTTTGACCTT
CCCGACGACACCTTTCAGGCCTTTTCCGAAGGTGATATCAGTAAGTGCAG
CTCATTGATGGACTCACCGTTCTGTCAAGCGCATTTACCATGGAGAGAGG
AGGTAGAAACGATGATGGAGTTTACGTTCACTCATGATGCAGAGGCCTTC
GCGACTCCCGCAGACAAGATGCAAGCTCGTGAATTTCTGGAGCTCCCTTC
ATATGCAGCTGCCTTCTATTCTTCAAACCATCCTCCTTTTCCTCCTACTT
CTCCTGTTGCTCAACCTTCCAGCCTCCTCACCTCAGCAAACGGCAAGCAC
AACGACGATTTATCTTCGTCGACTTCTTCATTTCCCAATACCACTCCCTT
TCCTGCTAGAATTGATCAATCTTCTCATGATGCAAGCGGTGTCACCCATG
ACATTGCAAGAGAAGAAGTGATTGGCCGAATCGAGGAGTTCATTTGCGCC
TGGATAGCGACACTCAGCGACAACGACATATCTGAGCCCCCCACTTTTGA
GGTCCGTCGACGCACAAAGGCAAATTCAATTTACTATCCAGGGGAGAGAA
AAAATGGAGAGTCATGTCAACAACTTCCCGGACTGAAACAAGGGGATGGA
GTGGTGATCAAGAAGCTTTCCGAAGGTGGAAGAGGTTCTGCTCGTTCATA
CGCCGCAATATTTGCCATTTTGGCATTTTCTCATCGGATTTTGCTGTCAA
ATCAAATGGCTACCAGTCGAGAAGTGTGGTACAACTACAAGGCATCGCAT
TCATGCTTCAAGTGTCAGGCAGATTGTGATAGAGCAGTCTTGGATGCTGC
TTCACTGCTGGGTGTGGCAAGGCACCAGTTGGGAATTGTAGGTGCAGCTA
AAGGTCTAATGGCCGGGCATTTTCGATTCCGTGTTTGGGGAAGTGGGAGA
GCATGGAACGAGTGTGATGGGGGTGGTGGAGACGGGGAAGGGGGCCTCGG
CTGTGGCGGTACACTGATCGACAGTTGTTGGATCACGGATGTGATGGAGG
TGGAGTGCCTCGGTAAACATCGTCCCCGCTATATTGTGGTCGTTGAGAAG
GAGTGTATGTTCAAGCGGCTAATTGGTGATGGCTTGCTAGGACAGGCGGG
AGGCATTGTTCTTATCACTGGAAAAGGCTACCCAGATTTGGCGACGCGGG
CGTGCGTAAAGGCGCTAGTCGACGCATTTGCCGTGCCGGTGGTGGGACTT
TGCGATTGCAATCCGCTTCCGAGCACCTGAAATGTGAACTAGAGGCATTG
AACACTTTCTCAGGAAGCAAGGGTCGACGGGATTTTTTGAGCCAGTACGT
TGTCTCGGCCTTGCTCTCTGGTGATTATCTGACGTAGTCACGGCATTGCT
CTCCTTCTGACATACAAATGTGGATCTTTCCGTATGCCTGAGTCGCAAGC
CTACCGTATTCCCTTATGCTGGCTAGGCCTGCGTCCCTCGCAGCTTAAGC
GACGCTTTGACCTTCCCGACGACACCTTTCAGGCCTTTTCCGAAGGTGAT
ATCAGTAAGTGCAGCTCATTGATGGACTCACCGTTCTGTCAAGCGCATTT
ACCATGGAGAGAGGAGGTAGAAACGATGATGGAGTTTACGTTCACTCATG
ATGCAGAGGCCTTCGCGACTCCCGCAGACAAGATGCAAGCTCGTGAATTT
CTGGAGCTCCCTTCATATGCAGCTGCCTTCTATTCTTCAAACCATCCTCC
TTTTCCTCCTACTTCTCCTGTTGCTCAACCTTCCAGCCTCCTCACCTCAG
CAAACGGCAAGCACAACGACGATTTATCTTCGTCGACTTCTTCATTTCCC
AATACCACTCCCTTTCCTGCTAGAATTGATCAATCTTCTCATGATGCAAG
CGGTGTCACCCATGACATTGCAAGAGAAGAAGTGATTGGCCGAATCGAGG
AGTTCATTTGCGCCTGGATAGCGACACTCAGCGACAACGACATATCTGAG
CCCCCCACTTTTGAGGTCCGTCGACGCACAAAGGCAAATTCAATTTACTA
TCCAGGGGAGAGAAAAAATGGAGAGTCATGTCAACAACTTCCCGGACTGA
AACAAGGGGATGGAGTGGTGATCAAGAAGCTTTCCGAAGGTGGAAGAGGT
TCTGCTCGTTCATACGCCGCAATATTTGCCATTTTGGCATTTTCTCATCG
GATTTTGCTGTCAAATCAAATGGCTACCAGTCGAGAAGTGTGGTACAACT
ACAAGGCATCGCATTCATGCTTCAAGTGTCAGGCAGATTGTGATAGAGCA
GTCTTGGATGCTGCTTCACTGCTGGGTGTGGCAAGGCACCAGTTGGGAAT
TGTAGGTGCAGCTAAAGGTCTAATGGCCGGGCATTTTCGATTCCGTGTTT
GGGGAAGTGGGAGAGCATGGAACGAGTGTGATGGGGGTGGTGGAGACGGG
GAAGGGGGCCTCGGCTGTGGCGGTACACTGATCGACAGTTGTTGGATCAC
GGATGTGATGGAGGTGGAGTGCCTCGGTAAACATCGTCCCCGCTATATTG
TGGTCGTTGAGAAGGAGTGTATGTTCAAGCGGCTAATTGGTGATGGCTTG
CTAGGACAGGCGGGAGGCATTGTTCTTATCACTGGAAAAGGCTACCCAGA
TTTGGCGACGCGGGCGTGCGTAAAGGCGCTAGTCGACGCATTTGCCGTGC
CGGTGGTGGGACTTTGCGATTGCAATCCGCTTCCGAGCACCTGAAATGTG
AACTAGAGGCATTGAACACTTTCTCAGGAAGCAAGGGTCGACGGGATTTT
TTGAGCCAGTACGTTGTCTCGGCCTTGCTCTCTGGTGATTATCTGACGTA
GTCACGGCATTGCTCTCCTTCTGACATACAAATGTGGATCTTTCCGTATG
CCTGAGTCGCAAGCCTACCGTATTCCCTTATGCTGGCTAGGCCTGCGTCC
CTCGCAGCTTAAGCGACGCTTTGACCTTCCCGACGACACCTTTCAGGCCT
TTTCCGAAGGTGATATCAGTAAGTGCAGCTCATTGATGGACTCACCGTTC
TGTCAAGCGCATTTACCATGGAGAGAGGAGGTAGAAACGATGATGGAGTT
TACGTTCACTCATGATGCAGAGGCCTTCGCGACTCCCGCAGACAAGATGC
AAGCTCGTGAATTTCTGGAGCTCCCTTCATATGCAGCTGCCTTCTATTCT
TCAAACCATCCTCCTTTTCCTCCTACTTCTCCTGTTGCTCAACCTTCCAG
CCTCCTCACCTCAGCAAACGGCAAGCACAACGACGATTTATCTTCGTCGA
CTTCTTCATTTCCCAATACCACTCCCTTTCCTGCTAGAATTGATCAATCT
TCTCATGATGCAAGCGGTGTCACCCATGACATTGCAAGAGAAGAAGTGAT
TGGCCGAATCGAGGAGTTCATTTGCGCCTGGATAGCGACACTCAGCGACA
ACGACATATCTGAGCCCCCCACTTTTGAGGTCCGTCGACGCACAAAGGCA
AATTCAATTTACTATCCAGGGGAGAGAAAAAATGGAGAGTCATGTCAACA
ACTTCCCGGACTGAAACAAGGGGATGGAGTGGTGATCAAGAAGCTTTCCG
AAGGTGGAAGAGGTTCTGCTCGTTCATACGCCGCAATATTTGCCATTTTG
GCATTTTCTCATCGGATTTTGCTGTCAAATCAAATGGCTACCAGTCGAGA
AGTGTGGTACAACTACAAGGCATCGCATTCATGCTTCAAGTGTCAGGCAG
ATTGTGATAGAGCAGTCTTGGATGCTGCTTCACTGCTGGGTGTGGCAAGG
CACCAGTTGGGAATTGTAGGTGCAGCTAAAGGTCTAATGGCCGGGCATTT
TCGATTCCGTGTTTGGGGAAGTGGGAGAGCATGGAACGAGTGTGATGGGG
GTGGTGGAGACGGGGAAGGGGGCCTCGGCTGTGGCGGTACACTGATCGAC
AGTTGTTGGATCACGGATGTGATGGAGGTGGAGTGCCTCGGTAAACATCG
TCCCCGCTATATTGTGGTCGTTGAGAAGGAGTGTATGTTCAAGCGGCTAA
TTGGTGATGGCTTGCTAGGACAGGCGGGAGGCATTGTTCTTATCACTGGA
AAAGGCTACCCAGATTTGGCGACGCGGGCGTGCGTAAAGGCGCTAGTCGA
CGCATTTGCCGTGCCGGTGGTGGGACTTTGCGATTGCAATCC back to top
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