rna4428, rna4428 (mRNA) Nannochloropsis gaditana

Overview
Namerna4428
Unique Namerna4428
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length708
Alignment locationCM002463.1:572255..574310 -

Link to JBrowse

Properties
Property NameValue
Producthomoserine o-acetyltransferase
Orig transcript idgnl|cribi|Naga_100025g66.7545.mrna
Orig protein idgnl|cribi|Naga_100025g66.7545
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:572255..574310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g66gene4272Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4428rna4428-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26254.1cds4417Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4428 ID=rna4428|Name=rna4428|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
ATGGGGCTCCTCCTGACCCTACAACCATCAGACGACCACAGTGTCCCCAC
CACCATGCCCTACCTTTCCTCCCCCCATTCCACGCGTCTGGTCAAGTTCC
TGCGGCCCGAGGCTCTGGCCGCCTATCTCCGGCACGTCCGAAGCACTTCC
GCAGGGGCTTCCGCCGTGCTCCTGGGCTTGGACGTGGGTGACAGTAAAGT
CGGCGTGTCTATCGCCGATAGGACCTTGACGCTTGCCCAGCCCCTGGCTC
GCATCGACCGCCCTGCCCGCCGCTCTCTCCTTTTTGGACAGGCCCCAGGG
GGCGCCGACAGAGGACGCCGGCAGCCCGAGACGTTCCCGGCTCTGTGTGG
GCGGCTCCTGTCCGGGCTGATCAAGGAGCATAGGGCGGCCGGCCTGGTGG
TGGGCTATCCCCTGACCTTGTGGGAAGGCAAGCCGAGCCTGCGGTGTCGG
GAGGTGCTGGCGTTCATGGGCGCCGTGTACAAAGAGTCGTGGGAGGAGCT
CAGCGTGCCTTTCGCAGTGTGGGACGAGAGGATGACGACCCAGATGGCTC
GAGAAGCCCTGAGGGGAGAAGAGGTGGAGGACGGCGGAGGATTCAGGAGG
GGGAAGAGAAAGGGGGAGAGGAGGCGGCAGGCCCTGGAAGACCAGGTTGC
GGCGACGATTATCTTGCAGTCATACCTAGAAAGACACATAAGGCCCGACA
TTGCCTGA
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protein sequence of rna4428

>rna4428-protein ID=rna4428-protein|Name=rna4428|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
METFTTRVLGGFRLNVGMYVFVPPGASQDIFLGDSPPHFSRAIMRDVEVR
YNTFGRLNEARDNVMVVCHALTGNARLDTWWSSLLGPGQAFDTDKYFVVC
ANILGSCYGTTGPMSRDPATGQVYGPRFPHVTIRDTVRLHMRMLKEAVGV
RSVASVVGGSMGGMQALEWAFLGLSGGGSRGAEAGESGESFVKSAVVIAC
GARHTAWQIGISETQRQAIYADPNWQGGAFDPAAPPVQGLAVARQIAMFS
YRTSHGFENKFGRARAEDGRYEVRRYLEYQGQKFLSRFDALTYVRLTEKM
DSHDVGRDRGGVDAALRSLRIPVLVIGIDSDVLYPLHEQEEMAGLIPMGE
LKVVQSRNGHDAFLLEQQQVGGAIAQFLRKNQL
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mRNA from alignment at CM002463.1:572255..574310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4428 ID=rna4428|Name=rna4428|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp|location=Sequence derived from alignment at CM002463.1:572255..574310- (Nannochloropsis gaditana)
CCTTTCGCAATGCCCGTCCCTCCCATCCTGCGGCACCGCAAGAAATCCCC
ATAAAATATATACTGACGTGCTAATCGCACTCACAGTGTAACATTTCCCC
CCTTTCACCGGAGACAGAGGGGCCAGCGGGACAGGCAGCCCTACTCCAAT
GCTGGGGTGGGCTCGAGCATGAGGGTGAGGGCAGCAATAGAACGCGTTGC
GGCAGCTAGCTCCCGAAGACTACTCACGCACCACGCTGTTTGCGCAGGCG
CCTGCAGCCGCCGCAGGGGCAGTGGCATCACGCTTCCTGCGCCACCACCG
TCCCCGCCTCGTCTTCTTTCTCGTCGTATCAGCACAATGCCTCTGACTGT
CTGCACTTCAGGCCTCACCAGGCGATGCAACAGCCCCGTAAGAGCAGCGG
ACTCACCCTCGTCGTTGATGACCCCGTCGCACCGCGGGAAGGCAACTTCT
GCGGCCACGCCAAGTGACGCGCTCAAGGATGAATATGGCAACCTGGATGC
GTCCGGCCAGACATATGTTGTGCCTCATTTTACCACGGAAAGCGGGTAAG
GAGTAGGCACAAGGGCGAAATTGAGGGGGAGAGGAGCCATATGTAGTCAA
TGGAGACATTCACGACCCGCGTTTTGGGGGGTTTTCGCTTGAATGTGGGC
ATGTATGTCTTTGTCCCTCCTGGCGCGTCTCAGGACATTTTTTTGGGGGA
TTCCCCGCCCCATTTCTCCAGAGCTATCATGCGCGACGTCGAGGTGCGTT
ACAACACATTCGGTCGCTTGAACGAGGCGAGGGACAACGTGATGGTCGTG
TGCCACGCGCTCACAGGCAATGCCCGCCTGGACACCTGGTGGTCCTCCTT
GCTGGGACCCGGGCAGGCCTTCGACACGGACAAGTACTTCGTGGTCTGCG
CCAACATCTTGGGTGAGGAGAGGGAGGGCCGGGCGCAGGGATGGGTGGAT
GCTGACGTGCGCGGGCAATGCCGTAGTAGCCGGTGGTCATGACGCTACCT
GTTCTCTCCCTCCTCCTTCCCCCCAGGCTCCTGCTACGGTACCACCGGGC
CCATGTCCCGGGACCCGGCCACGGGCCAAGTCTACGGCCCGCGCTTCCCC
CATGTCACTATCCGAGACACGGTGCGCTTGCACATGCGCATGCTCAAGGA
GGCCGTGGGTGTCCGCTCCGTCGCCTCTGTGGTGGGGGGTTCGATGGGGG
GCATGCAGGCGCTGGAATGGGCTTTCCTGGGGTTGAGCGGCGGTGGGAGC
CGGGGTGCTGAGGCCGGGGAATCCGGTGAGAGTTTCGTCAAGTCGGCCGT
GGTAATTGCCTGCGGCGCCCGGCACACGGCGTGGCAGATCGGGATCAGCG
AAACCCAACGGCAAGCCATCTACGCGGACCCGAACTGGCAAGGCGGGGCG
TTCGACCCGGCTGCGCCCCCCGTGCAAGGCCTGGCCGTGGCGCGTCAGAT
CGCTATGTTCTCGTACCGGACGTCGCACGGTTTTGAGAACAAGTTCGGGC
GGGCCAGGGCGGAGGACGGGCGCTACGAGGTGCGTCGGTATTTGGAGTAC
CAAGGTCAGAAATTTCTCTCGCGCTTTGACGCGTTGACCTACGTGCGGTT
GACGGAGAAGATGGACTCGCACGACGTGGGGAGGGACAGGGGCGGGGTGG
ACGCTGCCCTGCGATCCTTGCGCATCCCCGTCCTGGTAATTGGCATCGAC
TCGGATGTCCTCTACCCCTTGCACGAGCAGGAGGAGATGGCGGGGCTGAT
CCCCATGGGGGAGCTCAAGGTGGTGCAAAGCCGGAACGGCCACGACGCGT
TCCTGCTGGAGCAGCAGCAGGTGGGGGGAGCCATTGCGCAATTCCTAAGG
AAAAATCAACTGTAGTGTAAATGTGGATGGAGAAAGGGAGATTTTGGGGG
AATGTTCGTGCGATCGGTTGCCTGAGGAGATAGGGTGGTAAGAGGAAGCA
AACAAAGATGATAAATGAATCTGAAAATGGCTACGTGAGCGTAAAGAAAA
GGAAGGTGATGCGGCGAAGGAACAAAAACACAACCAGTCTTGGCTGTCTT
CCTTGG
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Coding sequence (CDS) from alignment at CM002463.1:572255..574310-

>rna4428 ID=rna4428|Name=rna4428|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002463.1:572255..574310- (Nannochloropsis gaditana)
GCTCCTGCTACGGTACCACCGGGCCCATGTCCCGGGACCCGGCCACGGGC
CAAGTCTACGGCCCGCGCTTCCCCCATGTCACTATCCGAGACACGGTGCG
CTTGCACATGCGCATGCTCAAGGAGGCCGTGGGTGTCCGCTCCGTCGCCT
CTGTGGTGGGGGGTTCGATGGGGGGCATGCAGGCGCTGGAATGGGCTTTC
CTGGGGTTGAGCGGCGGTGGGAGCCGGGGTGCTGAGGCCGGGGAATCCGG
TGAGAGTTTCGTCAAGTCGGCCGTGGTAATTGCCTGCGGCGCCCGGCACA
CGGCGTGGCAGATCGGGATCAGCGAAACCCAACGGCAAGCCATCTACGCG
GACCCGAACTGGCAAGGCGGGGCGTTCGACCCGGCTGCGCCCCCCGTGCA
AGGCCTGGCCGTGGCGCGTCAGATCGCTATGTTCTCGTACCGGACGTCGC
ACGGTTTTGAGAACAAGTTCGGGCGGGCCAGGGCGGAGGACGGGCGCTAC
GAGGTGCGTCGGTATTTGGAGTACCAAGGTCAGAAATTTCTCTCGCGCTT
TGACGCGTTGACCTACGTGCGGTTGACGGAGAAGATGGACTCGCACGACG
TGGGGAGGGACAGGGGCGGGGTGGACGCTGCCCTGCGATCCTTGCGCATC
CCCGTCCTGGTAATTGGCATCGACTCGGATGTCCTCTACCCCTTGCACGA
GCAGGAGGAGATGGCGGGGCTGATCCCCATGGGGGAGCTCAAGGTGGTGC
AAAGCCGGAACGGCCACGACGCGTTCCTGCTGGAGCAGCAGCAGGTGGGG
GGAGCCATTGCGCAATTCCTAAGGAAAAATCAACTGTAGATGGAGACATT
CACGACCCGCGTTTTGGGGGGTTTTCGCTTGAATGTGGGCATGTATGTCT
TTGTCCCTCCTGGCGCGTCTCAGGACATTTTTTTGGGGGATTCCCCGCCC
CATTTCTCCAGAGCTATCATGCGCGACGTCGAGGTGCGTTACAACACATT
CGGTCGCTTGAACGAGGCGAGGGACAACGTGATGGTCGTGTGCCACGCGC
TCACAGGCAATGCCCGCCTGGACACCTGGTGGTCCTCCTTGCTGGGACCC
GGGCAGGCCTTCGACACGGACAAGTACTTCGTGGTCTGCGCCAACATCTT
GGGCTCCTGCTACGGTACCACCGGGCCCATGTCCCGGGACCCGGCCACGG
GCCAAGTCTACGGCCCGCGCTTCCCCCATGTCACTATCCGAGACACGGTG
CGCTTGCACATGCGCATGCTCAAGGAGGCCGTGGGTGTCCGCTCCGTCGC
CTCTGTGGTGGGGGGTTCGATGGGGGGCATGCAGGCGCTGGAATGGGCTT
TCCTGGGGTTGAGCGGCGGTGGGAGCCGGGGTGCTGAGGCCGGGGAATCC
GGTGAGAGTTTCGTCAAGTCGGCCGTGGTAATTGCCTGCGGCGCCCGGCA
CACGGCGTGGCAGATCGGGATCAGCGAAACCCAACGGCAAGCCATCTACG
CGGACCCGAACTGGCAAGGCGGGGCGTTCGACCCGGCTGCGCCCCCCGTG
CAAGGCCTGGCCGTGGCGCGTCAGATCGCTATGTTCTCGTACCGGACGTC
GCACGGTTTTGAGAACAAGTTCGGGCGGGCCAGGGCGGAGGACGGGCGCT
ACGAGGTGCGTCGGTATTTGGAGTACCAAGGTCAGAAATTTCTCTCGCGC
TTTGACGCGTTGACCTACGTGCGGTTGACGGAGAAGATGGACTCGCACGA
CGTGGGGAGGGACAGGGGCGGGGTGGACGCTGCCCTGCGATCCTTGCGCA
TCCCCGTCCTGGTAATTGGCATCGACTCGGATGTCCTCTACCCCTTGCAC
GAGCAGGAGGAGATGGCGGGGCTGATCCCCATGGGGGAGCTCAAGGTGGT
GCAAAGCCGGAACGGCCACGACGCGTTCCTGCTGGAGCAGCAGCAGGTGG
GGGGAGCCATTGCGCAATTCCTAAGGAAAAATCAACTGTAGATGGAGACA
TTCACGACCCGCGTTTTGGGGGGTTTTCGCTTGAATGTGGGCATGTATGT
CTTTGTCCCTCCTGGCGCGTCTCAGGACATTTTTTTGGGGGATTCCCCGC
CCCATTTCTCCAGAGCTATCATGCGCGACGTCGAGGTGCGTTACAACACA
TTCGGTCGCTTGAACGAGGCGAGGGACAACGTGATGGTCGTGTGCCACGC
GCTCACAGGCAATGCCCGCCTGGACACCTGGTGGTCCTCCTTGCTGGGAC
CCGGGCAGGCCTTCGACACGGACAAGTACTTCGTGGTCTGCGCCAACATC
TTGG
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Synonyms
Publications