rna4422, rna4422 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4422
Unique Name	rna4422
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1143
Alignment location	CM002463.1:561778..565838 +

Link to JBrowse

Properties


Property Name	Value
Product	catalyzes the conversion of homocitrate to which is a step in the lys
Orig transcript id	gnl\|cribi\|Naga_100145g3.9682.mrna
Orig protein id	gnl\|cribi\|Naga_100145g3.9682
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:561778..565838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g3	gene4265	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4422	rna4422-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26274.1	cds4412	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:561778..565838+
coding sequence from alignment at CM002463.1:561778..565838+

mRNA sequence

>rna4422 ID=rna4422|Name=rna4422|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp
ATGAGGGAAACGTCACGCTGGAGGAGGCGGAGCCCTTTAACCCGTTTATT
CTCCTTTAAAGCCTCCCTTTGGCCGGACTGTAGGACAACGTCCGCCTCGA
AGCTGTTGCCGGCCCACTCCCTTGATCTTTGTTCCATTTTTGTCCTGCTC
GCAATCCTCGTTTCCGCTTCATCACACCCAACCTCCCTGCCTCCAACTCG
TCGACAAACCCCGTCCCTTTCCCGCCTGCCGCGACTTTTCCAGGCACGGT
CCTCGTACACGGCCTTCCAGCATGCAAACCACCCACAGTATTTGTACACA
CTTCGAAATGTCCGTGGCGGGGCATACCCTTCCAGGGACGACCAGGGCTA
TGGGAGAGGCGGCTATCCTCCTTACGACGACGACTACGGTGACGATTTTT
ACGACACTGATTCGTACTACCCACCACCCCCACCCCCTCCCTCTTCCTCT
CGGAACCGCAATCGAGCATCAGGGCGCCCATCCTCCCCCCCCACGTCGCC
CAGAGGGAGACCCGGCAGCAGCGCGAGCGCCTCTAGCTTCCGCTCTCTGG
TCAACGAGCCCGTCCCGCCCTCTCTCAAACGTCTGGGCTTCACCCTCTTG
GGCGCCAGCCTGGTCTTGACCGCCATGGGTGTCTCTCTCTTCTTTGAGCG
GAACCTCTTGCGCCTTGGCAACCTGTGCTTGATTGTGGGCTTGCCCCTCT
ACTTCGGCCCTGGCCGGGTCATGCGCTTGCTGGTGGCCAGAGAGAAGCTG
CGGGCATCCGTCTGTTTCTGTCTGGGCGTGCTCCTGGTGCTGCGAGGGAA
CTCCTTCTTGGGGATGCTGCTGGAGGTGTTTGGGTTTTTCAACTTGTTTG
CCAACTTCTTCCCCGTCGTCTTGGCCCTCCTCCGAGGCCTCCCTGTGGTC
GGCGACCTCTTGAAGCGGCCGGAGAGGGGCCCAGGGAGCGGGGGGGGGAG
AGGGAAGGAGTACTACGGGCAGAGCGGGAGAGGGACGTACAGGGATTCGT
ATCAGGGTGACTACGGCGACAGATGGAGCTACGACCCAAAGCATGGCGAC
GGGGAGCAAGACGCGTTCCGGGCGAGGTTCAAACGCCCTCAGCTTGCTCT
CTTCTCTTTTGCGTGGAGTGTCGGAACTGTATGCCCAGGTTGA

protein sequence of rna4422

>rna4422-protein ID=rna4422-protein|Name=rna4422|organism=Nannochloropsis gaditana|type=polypeptide|length=776bp
MAAHPRLLGRQGRSLQLLQQNLAACNQPRCSFAAAASPLNLVEKIARRHA
VDADKKDISAGNIISIKPKHVMTHDNTLAVMTKFVSLSHSEGSAISPDNP
FPSIADQRQPVLALDHNVQDSSPKNLARYAAIENFARQHGLDFFPAGRGI
GHQVLCEEGYVQPGWMVVASDSHSNMYGALGALGTPVVRTDAAALWATGR
TWWRVPPVARVELTGVLRQGVGGKDVILALCGLFRKDEVLNHAVEFAGDG
LSCLGMEDRMTISNMTTEWGALSGVFPADGVTLKWLQGRAGKLREKYGAV
GVDMHEKGGSMAPPASVPPRVLASERVAHAMAAGEPGMWERTDEKAQYAK
TLALDLSRLVPLVAGPNAIKSITPARSLEERRVQVHKAYIVSCVNSRVSD
LTSAADILRDRTVASGVELYIAAASSEVEEESKKRGDWSALVAAGAVELP
SGCGPCVGLGRGLLRDGEVAISATNRNFKGRMGSRHAQAYLASPAVVAQS
ALKGYIASPGRVDSGQEDSLWEVTAREIQTLRGKDASPEGPGQRDRARED
RPGVAPRAADTSHTVISGFPPILRGAVLLTPSPNIDTDGIYAGRHCYEDM
DARAQANVAMENYDPAFASLVQPGDVLVTGPNFGCGSSREQAATALRACG
IRVIVTASVNETFRRNALNNALLILEAPALVADIERRLSQSNFGSGMHMP
SIRLPDYSLEVDFVASILKLVSRGGDDTKKEIGGCPFDPVGRVAQEIVVA
GGLEGWVRQQLQENQVLSGARKKNAA

mRNA from alignment at CM002463.1:561778..565838+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4422 ID=rna4422|Name=rna4422|organism=Nannochloropsis gaditana|type=mRNA|length=4061bp|location=Sequence derived from alignment at CM002463.1:561778..565838+ (Nannochloropsis gaditana)
ACTAACCAGTCCATTGCCCCTGTCCTAATCGCAAGCCACAGGTACTGATC
CGAGCAATGCGTATACACACGACGTAGAGGGCAGAATTTTCTGCACATGG
CCGCGCATCCCCGGTTGCTGGGGCGGCAGGGTCGTTCATTGCAATTACTT
CAGCAGAATTTGGCCGCCTGCAACCAGCCTCGGTGTTcttttgctgctgc
agcatcTCCGTTAAACTTGGTTGAAAAAATTGCTCGGCGCCACGCGGTGG
ACGCGGACAAAAAAGACATTAGCGCAGGGAATATAATCTCCATAAAGCCG
AAGCATGTGATGACGCATGACAATACCCTGGCGGTCATGACAAAatttgt
ctccctctctcactctGAGGGCAGCGCTATTAGCCCTGACAATCCATTTC
CAAGCATCGCAGATCAGCGGCAGCCGGTGCTGGCCCTTGACCACAATGTG
CAAGATAGTTCCCCCAAAAATCTAGCTCGGTACGCAGCGATCGAGAACTT
TGCTCGTCAGCACGGCCTCGACTTCTTCCCAGCCGGGCGGGGCATAGGCC
ATCAGGTTTTGTGCGAGGAGGGTTACGTGCAGCCAGGCTGGATGGTTGTG
GCCAGTGACAGTCATTCTAACATGTACGGAGCATTGGGTGCACTGGGTAC
GCCGGTGGTACGCACGGATGCCGCCGCTCTTTGGGCTACGGGCAGGACCT
GGTGGCGGGTCCCTCCCGTGGCACGCGTCGAGCTGACGGGCGTGCTTCGC
CAGGGTGTGGGGGGTAAAGACGTGATATTAGCCCTATGCGGCCTCTTCAG
GAAGGACGAGGTTCTGAACCATGCGGTCGAGTTCGCGGGAGATGGCTTGA
GCTGCCTGGGCATGGAGGACAGGATGACCATCAGTAACATGACCACGGAA
TGGGGCGCCCTCTCCGGAGTATTTCCCGCCGATGGCGTCACCCTGAAGTG
GCTACAGGGGCGGGCCGGGAAATTGCGAGAGAAATACGGCGCTGTGGGGG
TAGACATGCATGAAAAGGGCGGGTCGATGGCGCCTCCTGCTTCCGTTCCC
CCCCGGGTGCTGGCAAGCGAACGCGTGGCGCACGCCATGGCCGCAGGAGA
GCCTGGGatgtgggagaggacggacgAGAAGGCGCAATACGCCAAGACGT
TGGCCCTCGACCTCTCACGTCTGGTGCCTTTGGTTGCGGGCCCCAACGCC
ATCAAGAGCATCACGCCCGCGCGTTCCCTCGAAGAGCGACGCGTGCAGGT
CCACAAGGCATACATTGTCTCCTGTGTGAACAGCCGCGTGAGCGACCTCA
CAAGCGCTGCCGATATATTGCGCGACCGCACAGTGGCATCCGGGGTTGAA
CTCTACATAGCCGCGGCCTCGAGcgaagtcgaggaggagtCGAAAAAACG
AGGCGATTGGTCAGCCTTGGTGGCAGCGGGAGCGGTGGAGTTGCCCTCTG
GGTGTGGGCCGTGCGTGGGTTTGGGAAGAGGGTTGCTGCGGGATGGGGAG
GTTGCGATATCGGCTACAAACAGGAACTTCAAAGGGCGCATGGGGTCGAG
GCACGCGCAGGCGTATCTCGCCTCGCCCGCTGTAGTCGCGCAGTCAGCCC
TGAAGGGGTATATCGCCAGCCCCGGGCGTGTGGACAGCGGACAGGAGGAC
AGCTTGTGGGAagtgacggcgagggagatTCAGACGCTGCGCGGCAAGGA
TGCATCGCCTGAAGGGCCGGGGCAACGCGATAGGGCCCGTGAGGACCGTC
CTGGAGTCGCTCCGCGTGCTGCAGACACCTCGCACACTGTCATCAGCGGC
TTTCCTCCTATCCTCCGAGGCGCCGTCCTCTTGACCCCGTCGCCCAACAT
CGATACGGACGGAATCTATGCCGGACGTCACTGTtacgaggacatggacg
cCCGAGCACAGGCAAACGTGGCAATGGAGAACTACGACCCCGCATTCGCC
TCCCTGGTGCAGCCCGGGGACGTGCTAGTGACGGGTCCCAATTTTGGCTG
CGGTTCATCTCGAGAACAGGCTGCCACAGCTCTGCGTGCATGTGGTATTC
GAGTGATCGTGACGGCAAGTGTCAACGAAACTTTTCGACGGAACGCTTTG
AACAATGCCCTGCTAATCTTGGAGGCACCCGCGCTTGTGGCCGATATCGA
ACGTCGTCTTTCTCAAAGCAATTTTGGTTCCGGTATGCACATGCCAAGCA
TACGTTTGCCTGACTACTCTTTGGAAGTGGATTTTGTGGCCTCTATCCTA
AAATTGGTTTCGCGCGGCGGTGATGACACGAAAAAAGAAATCGGAGGATG
TCCATTTGACCCTGTCGGACGCGTGGCTCAGGAGATTGTCGTCGCGGGAG
GGTTAGAGGGTTGGGTGCGACAGCAGCTACAAGAGAACCAGGTCCTTTCC
GGTGCAAGAAAGAAGAATGCAGCCTAACCATGATAGGCAATAAACTGTAG
CCCGCGTTTTGCGCGAAATAGGATGCCAGCTTGAAGTAGATGGGTCAGGA
AGCGCACATCTGTACAAAGCTTAGTGCGAGAACCTCCTGAACAAATGTGA
ATGGCGTAATCAGTATGTAAAAATTTGATACACAGTGAGGCTTATAAGCT
GCAATCAAGTTAGCAAGTTAAACGCATCTCACTACACACATCTATGCTTG
TTCGTGTCCGTTGGAGGTTTTCGACGTCAATCCTCCGTGATCACTTCCTT
CAAGGTCCCCTGTCTCCAAAGCCTTGAGAGCTGAGCGTCGCTCTTCCATG
ACTTTCTCCAGAGCTTGTCTCTTCTTGTCCAAAAAGCGCAAGCGGCCTCG
CGCATGTTGCAATGAGGCTTGATCTCGCGGACGTATCTGGACAGCTTTTT
GTAGCTCTTTCTCTCGTTTCGTAACTACCGCCAAGGGCTGACGAAGCTTG
GATATGGCTTCCCTGAGCTCTTCACACTGAAGTGCGTTCGCCTCAAGTTT
CGCTTGCACTTTAGAAGTCTCTTGATCGTATGCTTGTATGCTGGCTGCCT
GGTCCACCATGACGTTTCTGTAATACTGTTGTAGGTCCGTGATGACCGCC
TCGTGCTGAAGCTGGAGTCTTTTATCATGCTGGTCGGCAATTTCTTTTAT
GGCCTCCATCTCAAGCTTTTTGTGGGGTTCTACATTTGCTTGGAAGTCCT
CTAGATGACTCGCGCAAGTCCTCTTGAGGTCCGAGAGGTCTCTTTCAAGC
CTTTGCTGGAGTTGAGTGTACTCTTTTGAGAGATTATCCCGCAGCATATC
GAATTCTTGGTCTTTTTCTAGAGGGCCTACTAACGACGACTCGACGGGAG
ACTTTACTGAGGTATCATCGTCCGGATCAGGCATTTCTTCGTCTTCTGTG
GCGAGCAGCTGTTGGCTTTCTACAGCTGCGCGGTGCAAGTTCTCTTGATG
ACATAAGTCGAGGGCAAGTAATTTGTCTTCGTAGACGCGTAATTCCAGGC
GATTATTCAAGCGAACTTTTTCTATTTCCTCCCGCATCATTTCTACTGAT
TTGGATGTGTTGTGAAATTTCGGCTGGATGGTTGTGACATACTGGTGGCG
GATAATGTCATTATCGGTCTGTGCTTCAGCAAGTTTCAGTCGGGTATCTG
CAATATTTTGGTGTAGCCGCGCCATAGCAGCTTGCAGTGCAGCTACTGGC
TTGTTCTCATATAGGAGTGAAATAGTGTTGGACTGCGATGCGGCgagggc
aggagcagcagcacttGCATCATTCGACCTTCGGTTGCTTTTGCGGGCGG
GAGCGCTGCCCTTAGAACGCGTACCATTGGACTGCATTTGTTCAGCACGT
GCGTTGTTGGGGAGCTTTGCTCTGCCCTTAGCAGATGTAGCAGCCATTAT
GGAGGGTGGCATGATTATTTATGGGTCGTTCACTGTGCTATGTTTGGCCT
TGGTACTTGTGTAAGCTTGTACCAGAGAGCGTTCCACCACCAAAAGCCTT
CACTCCCTGCCGGCAGAAAAAAATGTATGAATAAATCATTTCGGAATTCA
CATGGATTTTCGTCGAAAAATACTGACAAGAAGATTCGCGGGCGATTGCT
AGGATATAGCG

Coding sequence (CDS) from alignment at CM002463.1:561778..565838+

>rna4422 ID=rna4422|Name=rna4422|organism=Nannochloropsis gaditana|type=CDS|length=2331bp|location=Sequence derived from alignment at CM002463.1:561778..565838+ (Nannochloropsis gaditana)
ATGGCCGCGCATCCCCGGTTGCTGGGGCGGCAGGGTCGTTCATTGCAATT
ACTTCAGCAGAATTTGGCCGCCTGCAACCAGCCTCGGTGTTcttttgctg
ctgcagcatcTCCGTTAAACTTGGTTGAAAAAATTGCTCGGCGCCACGCG
GTGGACGCGGACAAAAAAGACATTAGCGCAGGGAATATAATCTCCATAAA
GCCGAAGCATGTGATGACGCATGACAATACCCTGGCGGTCATGACAAAat
ttgtctccctctctcactctGAGGGCAGCGCTATTAGCCCTGACAATCCA
TTTCCAAGCATCGCAGATCAGCGGCAGCCGGTGCTGGCCCTTGACCACAA
TGTGCAAGATAGTTCCCCCAAAAATCTAGCTCGGTACGCAGCGATCGAGA
ACTTTGCTCGTCAGCACGGCCTCGACTTCTTCCCAGCCGGGCGGGGCATA
GGCCATCAGGTTTTGTGCGAGGAGGGTTACGTGCAGCCAGGCTGGATGGT
TGTGGCCAGTGACAGTCATTCTAACATGTACGGAGCATTGGGTGCACTGG
GTACGCCGGTGGTACGCACGGATGCCGCCGCTCTTTGGGCTACGGGCAGG
ACCTGGTGGCGGGTCCCTCCCGTGGCACGCGTCGAGCTGACGGGCGTGCT
TCGCCAGGGTGTGGGGGGTAAAGACGTGATATTAGCCCTATGCGGCCTCT
TCAGGAAGGACGAGGTTCTGAACCATGCGGTCGAGTTCGCGGGAGATGGC
TTGAGCTGCCTGGGCATGGAGGACAGGATGACCATCAGTAACATGACCAC
GGAATGGGGCGCCCTCTCCGGAGTATTTCCCGCCGATGGCGTCACCCTGA
AGTGGCTACAGGGGCGGGCCGGGAAATTGCGAGAGAAATACGGCGCTGTG
GGGGTAGACATGCATGAAAAGGGCGGGTCGATGGCGCCTCCTGCTTCCGT
TCCCCCCCGGGTGCTGGCAAGCGAACGCGTGGCGCACGCCATGGCCGCAG
GAGAGCCTGGGatgtgggagaggacggacgAGAAGGCGCAATACGCCAAG
ACGTTGGCCCTCGACCTCTCACGTCTGGTGCCTTTGGTTGCGGGCCCCAA
CGCCATCAAGAGCATCACGCCCGCGCGTTCCCTCGAAGAGCGACGCGTGC
AGGTCCACAAGGCATACATTGTCTCCTGTGTGAACAGCCGCGTGAGCGAC
CTCACAAGCGCTGCCGATATATTGCGCGACCGCACAGTGGCATCCGGGGT
TGAACTCTACATAGCCGCGGCCTCGAGcgaagtcgaggaggagtCGAAAA
AACGAGGCGATTGGTCAGCCTTGGTGGCAGCGGGAGCGGTGGAGTTGCCC
TCTGGGTGTGGGCCGTGCGTGGGTTTGGGAAGAGGGTTGCTGCGGGATGG
GGAGGTTGCGATATCGGCTACAAACAGGAACTTCAAAGGGCGCATGGGGT
CGAGGCACGCGCAGGCGTATCTCGCCTCGCCCGCTGTAGTCGCGCAGTCA
GCCCTGAAGGGGTATATCGCCAGCCCCGGGCGTGTGGACAGCGGACAGGA
GGACAGCTTGTGGGAagtgacggcgagggagatTCAGACGCTGCGCGGCA
AGGATGCATCGCCTGAAGGGCCGGGGCAACGCGATAGGGCCCGTGAGGAC
CGTCCTGGAGTCGCTCCGCGTGCTGCAGACACCTCGCACACTGTCATCAG
CGGCTTTCCTCCTATCCTCCGAGGCGCCGTCCTCTTGACCCCGTCGCCCA
ACATCGATACGGACGGAATCTATGCCGGACGTCACTGTtacgaggacatg
gacgcCCGAGCACAGGCAAACGTGGCAATGGAGAACTACGACCCCGCATT
CGCCTCCCTGGTGCAGCCCGGGGACGTGCTAGTGACGGGTCCCAATTTTG
GCTGCGGTTCATCTCGAGAACAGGCTGCCACAGCTCTGCGTGCATGTGGT
ATTCGAGTGATCGTGACGGCAAGTGTCAACGAAACTTTTCGACGGAACGC
TTTGAACAATGCCCTGCTAATCTTGGAGGCACCCGCGCTTGTGGCCGATA
TCGAACGTCGTCTTTCTCAAAGCAATTTTGGTTCCGGTATGCACATGCCA
AGCATACGTTTGCCTGACTACTCTTTGGAAGTGGATTTTGTGGCCTCTAT
CCTAAAATTGGTTTCGCGCGGCGGTGATGACACGAAAAAAGAAATCGGAG
GATGTCCATTTGACCCTGTCGGACGCGTGGCTCAGGAGATTGTCGTCGCG
GGAGGGTTAGAGGGTTGGGTGCGACAGCAGCTACAAGAGAACCAGGTCCT
TTCCGGTGCAAGAAAGAAGAATGCAGCCTAA

Synonyms

Publications