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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100145g6.9679.mrna |
| Orig protein id | gnl|cribi|Naga_100145g6.9679 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:558161..560483 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4419 ID=rna4419|Name=rna4419|organism=Nannochloropsis gaditana|type=mRNA|length=863bp
CAGATTTCAGAGACTCGTATCCTGTAGGCGATCACAAGCGAAGTGTGCGC
TTGCTTTCAGCTTTCCTCCTCGCTGCCGCCATCAATTTTCCGAGTGATGC
TCCATCCATCCGTATTCCTTTTTTTCATAACTTGGGCACATTGACGTATT
TGATACTCGGCAAACAGGTAGAAGTTCGATTTTGACAACCTCATCACTCT
GCCACAAGATGACCGACCCCCAAGCCCGCCTCCAAGCAGCCGTAACAACG
TGCATGGACAAACTAGACCGCGCCTACATACGAAAGCTGAGCAAAAATGC
TTACTCCTGCATGGCGGCGTGCCACGATCATAGCTCGTACACTTCTCAAG
ACGTCCAACAATGTGTTGGGGCTTGTTCGACGGGACTCCAGGAAATTAAT
GCTTTAATCTCAAACGAACTCCAGTACTTTCAAAATCGATTGCAGCGTTG
CCAGCAGTCTTGCGAGGATGAAGTCCGAGATACTCAAGCGAAAGCGGGTG
GGGGCAAACCTGATCCCTCTCAGCAAGCGAAGCTCCAAGGTATATACGAT
AAATGTGTGGGGAAATGCGTGGACACTCACCTGCCATTAGTGAACGCTAT
GGAGGCAAAGCTGGCAGGAGAGTGCAAGAAGCGCTTGTAATTCATGGATA
CGAAGGGTCGTGTTGGAATGGAGTTTATGAAGCATTGAAGGGCAAGCGAG
CCCATAAGTAAATGCTAAAAATGCAAAGAAATCAAAAGCAGAAAGTCTAA
ACACTTTAGGCTGACGAAGTTGCTCCCAAATGGCATGCGTGACAGATGAA
AATATATGCCGAAGCGGGTGATTCTTCGGACAGGCGTCTACGTCACAATT
CCCATGCATTTCG back to topprotein sequence of rna4419 >rna4419-protein ID=rna4419-protein|Name=rna4419|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLG
ADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQD
SLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVG
KEDFPPTAT back to topmRNA from alignment at CM002463.1:558161..560483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4419 ID=rna4419|Name=rna4419|organism=Nannochloropsis gaditana|type=mRNA|length=2323bp|location=Sequence derived from alignment at CM002463.1:558161..560483+ (Nannochloropsis gaditana)
AGCGGGATCGGGTGCACGCTACAGGGCAGTACATCAGAAAAGCAAGGGGG
GCATAGCAAACTTGAGACGTCTTTTTCCATCGCCGGTCTGACTCACACAA
AAGTAGTCGCTCGTGGTTTTAAGTTATACATGGCGCCATTACGCCTGCAC
GTCGGACTGCCGGAGCATTCACGTGCTTTAGCGGCGCGAGGATCCTCTCG
CACGGGCGAGAGCATGCATCTGCTTCAAGGTGTCAAGCCGACGGCGCCGT
CTGCGGCCTCGCGTGTCAATAATGAAAGAAAAGCTCCACATCCTGCATCA
TGAAGCGAGAGGAATGCATGTGTGTCATTGCTTCATCTTTTTTCGAAGGT
CGTGTTGAACACTGTGGGCTAGGCTAAGCACTTTGACCTCTCAGAGGCAA
CCTCCCACCcgatcccttccccccccaactATTCTGTAGTGAGATCCTGG
GGTAGCCCTTTTCACATTGATCACGTGATTTTGGATAAATAACCACGCAC
TTTTGGGTAAATATAAATAGGTTTTGGTCGTTCATTCTTGATCTGCTGGC
ATCGTGTGCCAATCACGACTTCCTATAGGAGTCGGAAATGCACTTGAATT
TCTTGAGCTTGAGAACCGAAGCAGAACATCAACTTGGCCTGCAAGACTTT
CACATGTGTTTTCCTTTTTAGATGAATTGAATTAAGACGTGGGAAAACCC
ACAGTTACGACAAAAGATTTGTTGAGACTGGAGGTGTGTCTTCCCTCGAG
GATTTTCACACATTAACAACTTTTattttcttcatccctcAACTTCAAGT
AGAAGCCAACTAGCACGCGCCCAGCAAGGGAAAAGCTCTGAAAAGAGGAA
ATCAAGAAGAAAACGAAAAAATATGCAGGGTAAAGACTTCAAAATTATGC
GTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCaatttggag
gaagaggaagactcTTACGTCCCCCATAAGGTGCATATGAAAGGTGCGTC
TAGCGGGCAGCCAACACTAGGCATGATCCAGGGCGAAAGATTAACCAAGA
CAGGATGCATGGGTTTGTAGTGGGATTACGCGCTTATTCCTGAGAAAAAG
ATGGACTTGATCCCTTCCTTACAGTTTCGTGTCAGAAAATGTTGTCTACC
TTAGGTTTCCTCTGTGCCTTTCACATGTCCTAACACCCCACCTGTCTTCA
TTGGAATACCTTAATTTCCTACGATCCAGAATGTATGATGCTCCGCCGTG
TGCTCGGGGCAGACAAAGcggattccctccctcgggcgtGCAAACTCAAT
GCGACCTCGCAGGCCAACCAAGGTTTCCTGACCCGACTCTCACACTTTAA
CGAGAGTTCCGACGTAGCCGGGGTGGTCAATATCAAGGAATGCCACAAAC
TGCAAGACAGCCTGCGCATGGTGGCCGGGGGAGTGACGTTTTTGCCCGCA
TCGTGTAACGCCATgctggcgaaggaggaggagacgctcAAAGACAAGTT
TGAGACGGAGAACGCCAAGGTCTACGCGCGACTGAAGCGTCGCAACAGCT
GGGTGGGTAAGGAGGATTTCCCACCCACTGCCACGTAAAGCCATGTGGGT
GTGGGGAAGGGACATAAGGAAATgaaaggcgagaaggagagggtgtcAGC
GTGATGGTCGATTGGGATGTGTGCCTGGGGGCGAgtcaggaggaagcagg
cgggTGGAGGGATACGCGACTGTCACGAAGGAATTGCATAGATAGTGCTT
gccaagggagaggatgtgTGCCCTGGAGATCCGCTCTGCTTTCTGGGCGA
GACCCATCACCCACTGCCCCGGGCCGTAGGACAAAGGACTAAGGGGCGCG
GTCATTGGAGAATCGTGCGTGAAGATAGGCTATCGCAAAGGCCgtaagag
aggaggaggcttaaAGAAAGAATGGACAGGCTTgcagggcgagaagggcT
TGAGATTGCAGTTTTACAAAATGGCtggtcgagggagagaggtcgcTTGT
TATGAAAAATGAAGGATAAGAATTGTGGATATGCGAACGACATCAGGTAA
TCATTTGAAACGAGTAAaacaaaaaggagaagggtcGGCAGCGTCCCAGT
GAGCGCACAGAAAatgtttctttttcttttctcacgGCATGTGAACAGTT
GGAGGACTTTGACGCTACAAGGAAAGGCAGGCCGGCCCTGCTTTCCGTGA
CCGTCCCGCCTCATACAGGCTTTCCGAGCTCAACCTGGGCATACAGTTCC
GACACTCCACGCAAAAGAGAAGAGAGCAAGCTGAGGGCGTTTGAACCTCG
CCCGGAACGCGTCTTGCTCCCCG back to topCoding sequence (CDS) from alignment at CM002463.1:558161..560483+ >rna4419 ID=rna4419|Name=rna4419|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at CM002463.1:558161..560483+ (Nannochloropsis gaditana)
ATGCAGGGTAAAGACTTCAAAATTATGCGTCGTAACAGTCTCACCGCTGA
AGTGGACGGAGTGTGGCCCaatttggaggaagaggaagactcTTACGTCC
CCCATAAGGTGCATATGAAAGAATGTATGATGCTCCGCCGTGTGCTCGGG
GCAGACAAAGcggattccctccctcgggcgtGCAAACTCAATGCGACCTC
GCAGGCCAACCAAGGTTTCCTGACCCGACTCTCACACTTTAACGAGAGTT
CCGACGTAGCCGGGGTGGTCAATATCAAGGAATGCCACAAACTGCAAGAC
AGCCTGCGCATGGTGGCCGGGGGAGTGACGTTTTTGCCCGCATCGTGTAA
CGCCATgctggcgaaggaggaggagacgctcAAAGACAAGTTTGAGACGG
AGAACGCCAAGGTCTACGCGCGACTGAAGCGTCGCAACAGCTGGGTGGGT
AAGGAGGATTTCCCACCCACTGCCACGTAAATGCAGGGTAAAGACTTCAA
AATTATGCGTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCa
atttggaggaagaggaagactcTTACGTCCCCCATAAGGTGCATATGAAA
GAATGTATGATGCTCCGCCGTGTGCTCGGGGCAGACAAAGcggattccct
ccctcgggcgtGCAAACTCAATGCGACCTCGCAGGCCAACCAAGGTTTCC
TGACCCGACTCTCACACTTTAACGAGAGTTCCGACGTAGCCGGGGTGGTC
AATATCAAGGAATGCCACAAACTGCAAGACAGCCTGCGCATGGTGGCCGG
GGGAGTGACGTTTTTGCCCGCATCGTGTAACGCCATgctggcgaaggagg
aggagacgctcAAAGACAAGTTTGAGACGGAGAACGCCAAGGTCTACGCG
CGACTGAAGCGTCGCAACAGCTGGGTGGGTAAGGAGGATTTCCCACCCAC
TGCCACGTAA back to top
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