rna4412, rna4412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4412
Unique Name	rna4412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1400
Alignment location	CM002463.1:541514..544093 -

Link to JBrowse

Properties


Property Name	Value
Product	tyrosine aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100145g15.9669.mrna
Orig protein id	gnl\|cribi\|Naga_100145g15.9669
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:541514..544093 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g15	gene4256	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26261.1	cds4402	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4412	rna4412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:541514..544093-
coding sequence from alignment at CM002463.1:541514..544093-

mRNA sequence

>rna4412 ID=rna4412|Name=rna4412|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
CCCAGACCTCTTCCTCCTTTGCGAGTCGGATGCTCTCAATCTCCCGCTCG
TCCTCCACCTCCTTCTGCATGAGTTCCTCCAGATATTTGCGATATATTCG
ACTTTCCTCTCTGGCCTTTACACCTCTATTTTTTTCCGCGGCTACACTTT
TGGCTTCCTCCTCCAACGCGTAGTTCAGCAAAGTCATGTCTTGCTGTCGT
TCTTCTTCTGCACGCGCACGCATCAGACCTAATCGCTGCTCATTGAATGC
ACGGATGTTTTGCCCTTTCAACCAGTCAGCTTTTTTGCGCTTTTCTGCAA
GCTCTTCCTCTTTGGTCAGCTCTAGTTGAATCTGTGCGATTTCCCTGGCA
TCCTCAGCTCTTTGTTGAGTTTTTTCCTGCTGTTGTTTACTCTGTTTTTC
ACGGATTTGAGCTTCCAGGCAGCAAAGGTTGTCACGTTTTCGTTGCATAC
TCCTAGCTTCGATCCGTTCCGCAGTGTCAGCCATTTTTTGACAGTATTTT
TCTACTTTGTTGTCCAATGCTGTCTCCTCTCGGACACGTTGCTCGCGCGA
ATTCCTTTTTTCTTCAATCTGTCGACGCTGAAAATCTGTCGTGAAGCGCT
GTAATGCTTGCCCATTTAAAATACGAGCATCATCGCAGCTACCAAGCCAT
TGCTTGTCGTAGCAGGATTGCACGAGTGCCCGACGCGCCTCCTCGTTTCG
GGATTGAAGAGCGTATGCTCGCGCTCGTAAAGTATTCTTTCGCTCCTGAA
GTGTTGCCGCATCTGCCCAAGGCCTGCACCTACTCGACTGATTTTCGGCA
TTGTAGTCGGAACTTGTATCACCTCTTTGTTGAGCTTTTCGCTCTGACGC
TTCCCTTTCTCTTTCCCAATTTTCTGCAATTGCTTGCTGCCGCTGTTCAT
GCCGAGACGAGGCCAATGCTTCCGTTCGAAGCTCCCACTCAGTTTTACTA
AAAGCTCTGACGTCAGAATCAACAGCCTTAGCAAAGACTTCCCTTTTGAG
AGAACGTTCACGCTCCCTGTCGAAGATTTGCTTTGGCGTTTTGATAGCCC
GCGACGAGGACAACATACACCTGGATAAAATCGAGAAGGGTGCTTCTTAT
TCATTCGAAAGGGTCAACAATGAATGAAAATTATCAGTAAAGCGCTTTCG
CATGTGAAGAATAAGAGCCTTTATTGGTTGAACTTTGCAATTTTATATAT
CAAGAACGAGGATTGTGCCGGTCAACCTCAACACGAAAAGTCAGCGGCAG
TAAAAAAAATGAGATCAGATAACGCCAACTCAAACTTAAACAATGGTTAC
AACAGTGTCAGTGCCTGCTTTAGTATGCCAGGCTCAGAATGGAACCCGAC
TATAAGTAATACATTTCGCCGATCACACAAACAACTTAAAGCTTTTTCTT

protein sequence of rna4412

>rna4412-protein ID=rna4412-protein|Name=rna4412|organism=Nannochloropsis gaditana|type=polypeptide|length=594bp
MPPLGENARAKACQAPPCLRHPQKPIIPSGCKTSSRAFTESKSADEPTGL
QAPAGSIPGAIPPPFASPDFGLHKASIVAIPPQHIASKLPFPYLAPRWEL
ASSRRASRTSNPLRNIVDHLKPDPEHPSPVLNFALGDPTAYATEGHLRCP
DVLIEAVAKHVEEGLHNGYACSAGTLEARQALAAAYSYPGRKLLTAEDVI
IASGGSGALEIVLTALLDEGDAVLIPRPGFALYQVLARSLGAEAVPYDLV
PEDNWAIDLAALDAAIAGYNNRQTVGNGGGAGLQGDVRGMPGSMRSDGPS
TSRTLPARIKAILVNNPSNPCGNVLSKENLLGLLDVARRHSLPIVADEIY
GRLVFPGEFFHPLGALTTDVPVLTVGGMAKQFAVPGWRVGWLLLHDPLGA
LDGPGEEETCDPPQQRRASLRRGLKNLTQLVLGANTLAQSTIPLLFSSKL
GPRLEAFYANYVSILVDNANFIKATLLPVAEGREGKEGIWGVTLSNFPQG
ALYLLLKLSLDKFIDLPDDVAFCAALLKEENLVLLPGQCFGIPGYVRLVL
TPPRPVLVEGLDRLRTFCFRHALVTKAEEARPLLPMGCHDKIAK

mRNA from alignment at CM002463.1:541514..544093-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4412 ID=rna4412|Name=rna4412|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp|location=Sequence derived from alignment at CM002463.1:541514..544093- (Nannochloropsis gaditana)
AGTACGCTGCGAGTCGCGGTGTGGGTACACATGCATCGTGGAGGCTGATT
GTTTTGGGGACACCACTTTGGTCATAATAACGGACATTTTGAGGCTGATT
TTTCCTTTTTTTTTTGACACGCACGTGGTGCAGCGAAACATAAACCGAGA
ATGCCGCCACTCGGGGAAAATGCACGCGCCAAGGCCTGTCAAGCACCGCC
ATGTTTGAGACACCCTCAGAAGCCGATCATACCTTCAGGGTGCAAGACAA
GCAGTCGTGCCTTTACAGAAAGCAAATCCGCGGACGAGCCCACGGGACTT
CAGGCTCCCGCCGGGAGCATACCAGGTGCCATCCCACCCCCATTTGCATC
CCCTGATTTCGGCCTTCACAAGGCGTCGATCGTCGCCATTCCTCCGCAAC
ATATCGCGTCGAAGCTCCCATTCCCGTACCTTGCGCCGCGTTGGGAGCTG
GCGTCCTCCCGACGGGCCTCGCGCACAAGCAACCCCCTCCGCAACATAGT
CGACCATCTCAAACCCGACCCCGAGCACCCCTCTCCGGTGCTCAATTTCG
CCCTGGGCGACCCTACTGCCTATGCCACTGAAGGCCACCTGCGTTGTCCT
GATGTCTTGATCGAGGCAGTCGCAAAGCATGTGGAAGAGGGCCTTCATAA
TGGCTATGCTTGCTCGGCGGGGACGTTGGAGGCGCGCCAAGCCCTAGCAG
CGGCCTATTCTTACCCGGGACGCAAGCTCTTGACGGCGGAGGACGTGATC
ATTGCAAGTGGAGGGTCAGGAGCCTTGGAGATTGTCCTGACCGCGTTACT
GGACGAAGGAGACGCCGTCCTCATCCCGCGGCCGGGTTTCGCCCTTTACC
AAGTGCTGGCCCGTAGCCTGGGAGCGGAGGCTGTTCCCTACGACTTGGTG
CCCGAAGATAACTGGGCAATCGATCTGGCCGCCTTGGACGCCGCCATCGC
TGGCTACAACAATCGGCAGACGGTGGGAAACGGCGGAGGCGCAGGTCTCC
AAGGCGACGTGAGAGGGATGCCTGGGTCGATGCGCTCTGATGGCCCCTCG
ACCTCTCGGACCTTGCCTGCCCGGATCAAAGCCATTCTGGTCAACAATCC
CAGCAACCCCTGCGGCAACGTCCTCAGCAAGGAAAACCTCTTGGGCCTCC
TGGATGTGGCGCGTAGACACAGCCTCCCCATAGTCGCGGATGAGATCTAC
GGCCGGCTGGTATTCCCGGGAGAGTTCTTTCACCCCCTAGGGGCCCTGAC
CACAGACGTGCCGGTCCTGACAGTGGGGGGCATGGCCAAGCAATTTGCCG
TGCCGGGGTGGAGGGTGGGGTGGCTGCTGCTCCATGACCCGTTGGGAGCC
TTGGATGGGCCCGGGGAGGAAGAGACCTGCGACCCGCCACAGCAGAGGAG
GGCGAGCTTGCGGCGCGGGCTGAAGAATCTCACTCAACTCGTCCTTGGCG
CCAATACGCTGGCACAGTCTACCATTCCCTTGCTTTTCTCCTCGAAACTC
GGCCCTCGTCTCGAGGCTTTCTATGCCAATTACGTCAGTATCTTGGTCGA
CAATGCTAATTTTATCAAAGCGACGCTGCTTCCCGTGGCCGAGGGTAGGG
AGGGTAAGGAAGGCATTTGGGGAGTGACGTTGTCAAATTTTCCACAGGGA
GCTCTCTATCTGCTCTTGAAATTGTCACTGGATAAATTTATCGACCTCCC
GGACGATGTGGCTTTTTGCGCCGCTTTACTCAAGGAAGAGAATTTGGTCC
TCTTGCCTGGGCAGTGTTTCGGCATCCCGGGTTACGTGAGGCTGGTCTTG
ACCCCTCCTCGGCCCGTCCTAGTGGAAGGATTAGACCGTCTTCGGACCTT
CTGCTTCCGGCATGCTCTTGTGACAAAAGCTGAGGAAGCGAGGCCGTTGC
TGCCCATGGGGTGTCATGATAAAATAGCTAAGTGATGGCGGCGCGCGGTT
ACCGTTGCAATGGAATCGTCACGATGGCAGAGCGTTCTGGTATTTACCAG
ACGCGGTGGTCCTCTTCAAGGAGACTGTACAGGAGTTATTCAGCTTTCTG
TTTAGTGGGTGGAAAGGTCAGTCTGTAGCTTAGTGAGCGACAGCGTCATT
CAACCGTCTGTGCATATATTATTTAACTTGCAAACTGTTTTCAGAATAGA
AAAAATAAACCGACATAAATAGTGCATGGGGTATCTAGCAAATTGTGGGC
TCATGAAGTCTGTGTGGTTTGCGAGTTGCGTGTCATATTGTTGAATAACT
TTTAAACTCGCGCCTAGGGGTTCATGATCGTGTGCTATGTCTCGATGAGA
TCCAATTCAAAATTGGCGAAACTTTATTCGCGTCAGCTCAGCTTTTTACT
AAGTTTCTGAAATAATGTGCAAAGCTTACGGGTCTAAAAAAGATGTGTGA
AGTAATATGTAGGAATACAGAAAAAAGTGAACGAGTATCTCATATAATTT
AAGTACTACTTGTTCCACTTCCTTTGTCTCTGAAAGTCTTGTTCAGTCTG
TCCATTTCTGTGAGCGCAAAGGGAAGTGAATCTGTGCAACCCCCGCCTGC
TCCTGACGTCTTCGTTGTTGGTCCGCCTCC

Coding sequence (CDS) from alignment at CM002463.1:541514..544093-

>rna4412 ID=rna4412|Name=rna4412|organism=Nannochloropsis gaditana|type=CDS|length=1785bp|location=Sequence derived from alignment at CM002463.1:541514..544093- (Nannochloropsis gaditana)
ATGCCGCCACTCGGGGAAAATGCACGCGCCAAGGCCTGTCAAGCACCGCC
ATGTTTGAGACACCCTCAGAAGCCGATCATACCTTCAGGGTGCAAGACAA
GCAGTCGTGCCTTTACAGAAAGCAAATCCGCGGACGAGCCCACGGGACTT
CAGGCTCCCGCCGGGAGCATACCAGGTGCCATCCCACCCCCATTTGCATC
CCCTGATTTCGGCCTTCACAAGGCGTCGATCGTCGCCATTCCTCCGCAAC
ATATCGCGTCGAAGCTCCCATTCCCGTACCTTGCGCCGCGTTGGGAGCTG
GCGTCCTCCCGACGGGCCTCGCGCACAAGCAACCCCCTCCGCAACATAGT
CGACCATCTCAAACCCGACCCCGAGCACCCCTCTCCGGTGCTCAATTTCG
CCCTGGGCGACCCTACTGCCTATGCCACTGAAGGCCACCTGCGTTGTCCT
GATGTCTTGATCGAGGCAGTCGCAAAGCATGTGGAAGAGGGCCTTCATAA
TGGCTATGCTTGCTCGGCGGGGACGTTGGAGGCGCGCCAAGCCCTAGCAG
CGGCCTATTCTTACCCGGGACGCAAGCTCTTGACGGCGGAGGACGTGATC
ATTGCAAGTGGAGGGTCAGGAGCCTTGGAGATTGTCCTGACCGCGTTACT
GGACGAAGGAGACGCCGTCCTCATCCCGCGGCCGGGTTTCGCCCTTTACC
AAGTGCTGGCCCGTAGCCTGGGAGCGGAGGCTGTTCCCTACGACTTGGTG
CCCGAAGATAACTGGGCAATCGATCTGGCCGCCTTGGACGCCGCCATCGC
TGGCTACAACAATCGGCAGACGGTGGGAAACGGCGGAGGCGCAGGTCTCC
AAGGCGACGTGAGAGGGATGCCTGGGTCGATGCGCTCTGATGGCCCCTCG
ACCTCTCGGACCTTGCCTGCCCGGATCAAAGCCATTCTGGTCAACAATCC
CAGCAACCCCTGCGGCAACGTCCTCAGCAAGGAAAACCTCTTGGGCCTCC
TGGATGTGGCGCGTAGACACAGCCTCCCCATAGTCGCGGATGAGATCTAC
GGCCGGCTGGTATTCCCGGGAGAGTTCTTTCACCCCCTAGGGGCCCTGAC
CACAGACGTGCCGGTCCTGACAGTGGGGGGCATGGCCAAGCAATTTGCCG
TGCCGGGGTGGAGGGTGGGGTGGCTGCTGCTCCATGACCCGTTGGGAGCC
TTGGATGGGCCCGGGGAGGAAGAGACCTGCGACCCGCCACAGCAGAGGAG
GGCGAGCTTGCGGCGCGGGCTGAAGAATCTCACTCAACTCGTCCTTGGCG
CCAATACGCTGGCACAGTCTACCATTCCCTTGCTTTTCTCCTCGAAACTC
GGCCCTCGTCTCGAGGCTTTCTATGCCAATTACGTCAGTATCTTGGTCGA
CAATGCTAATTTTATCAAAGCGACGCTGCTTCCCGTGGCCGAGGGTAGGG
AGGGTAAGGAAGGCATTTGGGGAGTGACGTTGTCAAATTTTCCACAGGGA
GCTCTCTATCTGCTCTTGAAATTGTCACTGGATAAATTTATCGACCTCCC
GGACGATGTGGCTTTTTGCGCCGCTTTACTCAAGGAAGAGAATTTGGTCC
TCTTGCCTGGGCAGTGTTTCGGCATCCCGGGTTACGTGAGGCTGGTCTTG
ACCCCTCCTCGGCCCGTCCTAGTGGAAGGATTAGACCGTCTTCGGACCTT
CTGCTTCCGGCATGCTCTTGTGACAAAAGCTGAGGAAGCGAGGCCGTTGC
TGCCCATGGGGTGTCATGATAAAATAGCTAAGTGA

Synonyms

Publications