rna4411, rna4411 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4411
Unique Name	rna4411
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1509
Alignment location	CM002463.1:539795..541194 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100145g16.9677.mrna
Orig protein id	gnl\|cribi\|Naga_100145g16.9677
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:539795..541194 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g16	gene4255	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26269.1	cds4401	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4411	rna4411-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:539795..541194-
coding sequence from alignment at CM002463.1:539795..541194-

mRNA sequence

>rna4411 ID=rna4411|Name=rna4411|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp
CGGGGTGCATGACAATCGAGAAGTGGGTGATTTGCTGTCTTCTCCGTTTG
CTGTCGGGTACAATCAGACGAAGCATAATGTGTGTGCTTGTCTCTAATCG
CAAATTGCTTCATTTGTGAGCTCCTAGAGGGACGTAGTACGCCTAGGCTG
CTTGCTGTCAGTCTCGTTCTCCGCGCCAAAGTTTGAGTAGAAGGATCTGC
AAAAGGTGCCCTTTGTACCATCGCTACCTGTATATGGGATATTCAGGCCA
TTGTGAACGGCTATCAGGTGTAGAGCACTTCCTAAGTCAGCACTGCCATC
CCATCGAGTACATTTAACCCGTGCACTCGCTTTTCCTTGCTCGCACGGTA
CTCATCTGTTCTTCATTCTGTGTTTCAGACTGACAACTACATAAAGTCTA
GGAAAACATGTTTGAAGCTCGGCTAACGGAGGGAAGCCTTCTCAAGAAGA
TTATCGAGGCCATCAAGGATCTGGTCCAGGAAGCAAATGTTGACTGCTCG
GAAGAGGGGCTTACCATGCAGGCCATGGACGCTTCCCACGTCTCCCTCTG
CTCGTTGAATATGCGACACGGTGGCTTCGACCACTATCGATGCGACCGCT
CTATCTCTCTGGGCCTGAACCTGGCCAACCTGGGCAAGATCTTGAAATGC
GCAGGCAACGACGATGTGGTTACCCTCAAGGCTGAGGACGAGCCGGACAC
CTTGACGCTCATGTTTGAGTCGCCGAACCAGGAGCGCATTTCGGACTTCG
AGCTAAAGCTGATGGACATTGAAACGGAGCACCTAGGCATTCCCAACGAG
GAGTACAAGTGCACGATCAGCATGCCCTCCGGGGAGTTCCAACGCATCGT
GCGGGACTTAGCCGTCATCGGCGAGACCTGCATCATCACTTGCACGAAAG
AAGGGGTCAAGTTCTCCGTCTCGGGCGACCTGGGCAATGGAAATGTGACG
GTCCGACAGTCCTCGGCAGCGGACGGGGACGAGAAGGACCAGGTGAAGAT
CCAGATGGAGGAGCCAGTGACCCTAAACTTCGCGCTCCGGTACCTGGGGT
TCTTCACCAAGGCCACGCCCCTCGGATCCACGGTCAAGCTCCACATGTCG
CCCGACGTGCCCATCGTAGTGGAGTACCCCATAGACGGCATCGGCTCCAT
CTCCTATTTCTTGGCGCCCAAGATCGACGAGGACTAAGCGGGTCGAATGT
GGGCCCTGGGTGGGGAAAAGACCTCCAGTGAACGAGGGTCCAGGCCCAGG
AGTAAAGGATAGGGCAACAAGGTGGTCTCTGGGGCAGCAACAAGGAGACC
CGCGGACCCAAACCTCAAAGAGAGGAGAAGATATGGGGGGGCCTCCCAAA
GAATCATAAATAGAAAGCATCGAAACCTCCCATGCGAGCGTCTGGCAGGT
CATGGCGTTTACTCTATGATCTTGTTTTTCATCTTCTACATCTTTATCCA
TCTGAATCAGGGTCTTGATCAAAGAAACACTTGCGTCTCCTGCTGGGAGA
GGCCTGCCA

protein sequence of rna4411

>rna4411-protein ID=rna4411-protein|Name=rna4411|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MLAHLKYEHHRSYQAIACRSRIARVPDAPPRFGIEERMLALVKYSFAPEV
LPHLPKACTYSTDFRHCSRNLYHLFVELFALTLPFLFPNFLQLLAAAVHA
ETRPMLPFEAPTQFY

mRNA from alignment at CM002463.1:539795..541194-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4411 ID=rna4411|Name=rna4411|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp|location=Sequence derived from alignment at CM002463.1:539795..541194- (Nannochloropsis gaditana)
CCCAGACCTCTTCCTCCTTTGCGAGTCGGATGCTCTCAATCTCCCGCTCG
TCCTCCACCTCCTTCTGCATGAGTTCCTCCAGATATTTGCGATATATTCG
ACTTTCCTCTCTGGCCTTTACACCTCTATTTTTTTCCGCGGCTACACTTT
TGGCTTCCTCCTCCAACGCGTAGTTCAGCAAAGTCATGTCTTGCTGTCGT
TCTTCTTCTGCACGCGCACGCATCAGACCTAATCGCTGCTCATTGAATGC
ACGGATGTTTTGCCCTTTCAACCAGTCAGCTTTTTTGCGCTTTTCTGCAA
GCTCTTCCTCTTTGGTCAGCTCTAGTTGAATCTGTGCGATTTCCCTGGCA
TCCTCAGCTCTTTGTTGAGTTTTTTCCTGCTGTTGTTTACTCTGTTTTTC
ACGGATTTGAGCTTCCAGGCAGCAAAGGTTGTCACGTTTTCGTTGCATAC
TCCTAGCTTCGATCCGTTCCGCAGTGTCAGCCATTTTTTGACAGTATTTT
TCTACTTTGTTGTCCAATGCTGTCTCCTCTCGGACACGTTGCTCGCGCGA
ATTCCTTTTTTCTTCAATCTGTCGACGCTGAAAATCTGTCGTGAAGCGCT
GTAATGCTTGCCCATTTAAAATACGAGCATCATCGCAGCTACCAAGCCAT
TGCTTGTCGTAGCAGGATTGCACGAGTGCCCGACGCGCCTCCTCGTTTCG
GGATTGAAGAGCGTATGCTCGCGCTCGTAAAGTATTCTTTCGCTCCTGAA
GTGTTGCCGCATCTGCCCAAGGCCTGCACCTACTCGACTGATTTTCGGCA
TTGTAGTCGGAACTTGTATCACCTCTTTGTTGAGCTTTTCGCTCTGACGC
TTCCCTTTCTCTTTCCCAATTTTCTGCAATTGCTTGCTGCCGCTGTTCAT
GCCGAGACGAGGCCAATGCTTCCGTTCGAAGCTCCCACTCAGTTTTACTA
AAAGCTCTGACGTCAGAATCAACAGCCTTAGCAAAGACTTCCCTTTTGAG
AGAACGTTCACGCTCCCTGTCGAAGATTTGCTTTGGCGTTTTGATAGCCC
GCGACGAGGACAACATACACCTGGATAAAATCGAGAAGGGTGCTTCTTAT
TCATTCGAAAGGGTCAACAATGAATGAAAATTATCAGTAAAGCGCTTTCG
CATGTGAAGAATAAGAGCCTTTATTGGTTGAACTTTGCAATTTTATATAT
CAAGAACGAGGATTGTGCCGGTCAACCTCAACACGAAAAGTCAGCGGCAG
TAAAAAAAATGAGATCAGATAACGCCAACTCAAACTTAAACAATGGTTAC
AACAGTGTCAGTGCCTGCTTTAGTATGCCAGGCTCAGAATGGAACCCGAC
TATAAGTAATACATTTCGCCGATCACACAAACAACTTAAAGCTTTTTCTT

Coding sequence (CDS) from alignment at CM002463.1:539795..541194-

>rna4411 ID=rna4411|Name=rna4411|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002463.1:539795..541194- (Nannochloropsis gaditana)
ATGCTTGCCCATTTAAAATACGAGCATCATCGCAGCTACCAAGCCATTGC
TTGTCGTAGCAGGATTGCACGAGTGCCCGACGCGCCTCCTCGTTTCGGGA
TTGAAGAGCGTATGCTCGCGCTCGTAAAGTATTCTTTCGCTCCTGAAGTG
TTGCCGCATCTGCCCAAGGCCTGCACCTACTCGACTGATTTTCGGCATTG
TAGTCGGAACTTGTATCACCTCTTTGTTGAGCTTTTCGCTCTGACGCTTC
CCTTTCTCTTTCCCAATTTTCTGCAATTGCTTGCTGCCGCTGTTCATGCC
GAGACGAGGCCAATGCTTCCGTTCGAAGCTCCCACTCAGTTTTACTAA

Synonyms

Publications