rna4407, rna4407 (mRNA) Nannochloropsis gaditana

Overview
Namerna4407
Unique Namerna4407
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3549
Alignment locationCM002463.1:519902..523055 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100073g2.10386.mrna
Orig protein idgnl|cribi|Naga_100073g2.10386
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:519902..523055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100073g2gene4251Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4407rna4407-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26278.1cds4397Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=mRNA|length=3549bp
TTTGGTGACTGTACGGAGTATGCAGTAGGCAATTCTGAGAAGGTCTGCGC
CCTGGAATGCTGAAAATGGTCGAAGCGAAAGCCGACATCCTTCGTACATG
TCAGCCCTTTTTTTCCATTCTCACGCTCTCACTCCCGTAAGCAGATAAAA
ATTGATTACGATCTCCTGGGATATTTTCTAAAGCCTGTGCATGGGGACGA
GCGCATCTAAGTTTGGGCAGTATGAGGCGAACCGTGGAGGGCTTAGTCCA
AGTGTGGTCGAGCTCGGTGCCGAAGCCAGTGCGATATTCTTTGCTGTTTT
TTTCACTGCCTATACCGTAGCCCACTGGCGCAATTGGTTACCCAAGGTTT
TCGCCTCGCGCCGTTTTCTCTATCCCAAGCGCACCTTCCCTTTCGAGACC
CCACCCCGTCGCCGCCATCTCTTCAGCTGGCTGGTGGATTCATGGACGGT
GGGAGACAAGGACATCTTGCGTTATTACGGACTGGACGCCCTTCTCTTCC
TGCGCTCTTTACGACTGCAATCCTTAGTCATTCTTCTCTGCTCCTTGTAT
GGGCTCTGTGTGATTTTGCCGGTCAACATGCAGGGCCAAGCCGTCTTCAC
CTCGCCTCCGTGGGGCGCAGCCTACACCACTGCCCACATCGGGCCCCTGG
CGTCGGTGGCGCCATCTTCTCCCGCAGACCCCGACAGCCCCACGCTTGGC
ACGCCGCCACCATCTTCCTCCGAGCCCGAGGATGTGACGCGCTTGTTCCT
GGTGCACGTGCTGGGGGCTTACTATATGACAGGCGTCTGTCTCTATTTGC
TCTGGCGGCAGTACCAAGAGTACCTCTCTCTCCGCCACGCCTTCCGACAG
CGGCCCGACCCCGCCAATTATACCATTATGGTTCACCATATACCTGGCTC
CATGCGCAGCAACACAGCCGTCAGCGCCTACTTTGACGCCCTCTTTCCCG
GGTCCGTGCAGAAGGTGACCCTCATGCTGGAACTTCCGGAGCTGGAAGCC
CTGATTCGAAAGCGCGACCGGGTCGCCCATCGCTTGGAGTGGGCTTTGGT
CGTGCAAGGGGACCTGTCCAAGCTCCGATGCGCCTGGACGAGAAAGCCCG
CGAGCATCGACGTCTTGGTGGAGGAGCTGCGGGAGGTAAGGAGAGGGGGG
CCACGGTGGGGATCGAAGGGGAAGGAACGCGACTTGGTATTGGCGGCTTG
AATGGGCCAAGCCTTGTTAATCTCTCTTCCATATACTCTTCGGGGAATCT
GTGAGCTGCGCCTAAGGTCCTTGCTCCCCCCTCCCCCTTTTTTTGGGGGG
TTCCTGTCTCGCAGGAATTGCCGCGTTTGGAGTCCCAGGTGGCAGAATGG
CAAGAAGAACTCATGGATTGGCACGTCCGGCACGAGCGCTTCTCCCGACG
CGCGCCCTTGGAGGCTGGGTCGGGGAGGGGAGGTAGGACTTTGGATGAGC
TAGAGGGGGAGGAGGGCGTTGATTTGAGCTTGAGCGCCAGTACGACGATT
AGCGGCGGGGAGGAGGAGGCGGGGCAGGATGGGAGCAGCGGGTTGGACGA
AGAGGACGGGGAAGAAGAGGAAGGGGCCCAGCAGGACCCAATGCGGGAGG
CGCTCCTGAAGGAGTCAGCAGGAGGGAGGCTGGAAACGGGCATGGCGCCT
GGCCAACGGCGTGGCAAGGCCGGCCACAGCGCAAGGCGGTCGGCGAGGCG
TGGGGTAGGGGCGGGGCTGGACGAGGAGGACTACGTGCAAAGCGGGGAGG
AAGGGGAGGGGAGGTCGGAGGAGGGGCGTCCGAGCGGATTGATCCCACCC
TGGGTGCAGGGGTGGCACGGGCGTGCTCGGAGGGAGATGGGGCGAGGGCA
GGCCGAGAGGGACAAGGTAGAGGCGCAGGAGGAGGGGCAGGCGAGGATTA
GGCGCCCGAAAGCAAGGAGGGAGCGCTCCAAGGGGCTGCGGCTTCTGCGG
GAGAAGACCTTTCGAATGATCACGGGGAACCCGGCGGGGGCCATCGCCTT
TGTCAGCTTCCGCTCCTTGGCGGTGGCGAGCGTGGCAGGCCAATGCGTCA
CGTACCGGCATCCCTTGAAGATGATGACCAAGCCCGCCCCTGCGCCCGCG
GACATCATCTGGACTAACGCCTACATGCCCATGCGCCTTCTCCCCATCAA
AACCGTCCTCGGCGTCGGGTCCTCCGTGGTCGTCACGCTCTTCTTCTCCG
TCATCGTCGGCATCATCGCCTCCCTCACCAACGTGCAGACCCTCCACGAC
CATGTCCCCTTCATGCGAAATTTCCTTGAAAAGTCCAAACTGGCGCAAGA
GCTTCTCCCCTACCTGCCGGCCTTCCTCCTGGTCATGGTCGATTGCACCA
TTCCTCCCATCCTCTCCCTCTTGGCCCGCGTCGTTTTCCGCGAAGTCAGG
ACCGTCAGCGAGGCGCACGTGACTGTCTTCCGCCGCCTGTACCTCTTCCT
CATGTACAACAACTTTCTCATCCTCTTTCTCTCCTCCTCCCTGAACACCT
ACTACGCCATCGTCGAGGACCCCCATCTGACCCTGGTCGAGCTCGGAATC
TTTCTGCCCAACATTTCCTCTTTCTACATTGCCTACATCATGATTAAAGT
CTTGTGCTCGCACCCTATGGAGCTTTCCAGGATGTCCTCCTTCTTCGTGG
CGGGCATTCGCTGGTTCTTCACGGACGACCTGACCGAGGCACAGAAGGCG
GCTCGAATCTTGGGGTGCAACGCGCTGGAGCGGCCGGGAGGATTTTATTA
CGGACGAATCTACGCGGACAACCTCTTCGTCTTCACCATCACCATGACCT
TCGCGTTGGTGGCGCCCTTGATCCTCCCCTTCGCCCTCGCCTTTTTCGTC
GGGGCCCTGGTCGTCTACAAGCGTGTCCTCCTCTTTGTGTACGAGCCTGA
GTTCGAGAGCTGCGGGACCTTCTGGCCCAAGACCTACCGGCGGATGGTGG
CAGCCCTCTACTTTATGCAGTGCGCCTTGCTTTGCATCCTGATAACCAAC
GAAGCCTTCGAGGAGGTCGCCTGGTTGGCCCCGCTCCCTCTCCTCACCCT
GCTCGCCTCCCTCGTTATCACTCGCTCTTACAAGGAGGCTGCCGCGCACC
TTCCTCTCTCGGTCGCGATGGAGATGGACGAGTTGCACAAATCCTGGGGG
GAGACGTACGGGTTTCTCAATCACTCGTACATCCAGCCAGCGCTTCAGCC
CCTGAAGACCTCCCACGGCCTGGTCGGAGTTGGCTCGTGTCGACCTTACG
AGCCTCCCACGACCGTCGCACCCGCACCCTCTACGGCGCCTCCGGTACCG
GTGGTGCCCGCTGCTGCCGGTCCCTCCCTGGTGATAGAGTCAGGAGCCAC
GCCTGCCGAAAAGCAGGAGCACGGCATCCCCGACGCGAATCCCACCACGG
CCATGAACGGGGCTCTCGCAGAGACGAACGAAATCGCAGTGAGCAATGAC
GGCAATTAGCAAGAAGAGGAATACGCCACGGACGTACACAGGGAGTCAAG
TAATGCATGTACATAAACGTATGAAAATGATTCACTTGACCGCTTTACC
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protein sequence of rna4407

>rna4407-protein ID=rna4407-protein|Name=rna4407|organism=Nannochloropsis gaditana|type=polypeptide|length=868bp
MYEARGKAGPGWGGTERKEVSHALVIGLHRKRMTVYIILELILTVGLFQF
MASWLRGRILDWAGSVIVQGLECCHMFLRLRLQSWCVCCLRLGASVLAGS
WVMPQGPGDWTALFMVIAGQVLSLSSRYHCMFGGAERPMAKTYLIGSHVV
SGLLISGAFLSRAGGPGGEGMLSACELRHHGIAVALAGVLSCLIDALAYY
NRGYQSTRGIGPFRRPPSGGRRRRLVLARGYDQDLFDLHHFLSGPGEASQ
WEGGLSSPHSSMLIPDLPPSQSLPSFLGPEASQWARRCGHLWMRLSALWE
EMGGRELAGRLLLTSVGVAASAGPAETLLAKASALIFGEDHQYHGLPPVG
SSWQALPKVAFTTVAVAVYGFFTLGRSTLLLCHLLRQPVDFSALGKGERG
GAESLLHGWLEKGWAVILREPRLEHPNRGGGRRQSAESAFEAPEKDMWRG
EMEETQRMLYRTAVLASWSVFPPRLEMFDVSRQPLGPTDRLYRAQAFLDL
AILAHGQVERRRQACFKDRGVWRATCRPLVMVVNALTLQIELEMEGCGRV
EGGMPSPLKKLHARLGLVEPEEGNSLAGLIVDAEVQRRMEEVWSRRRSHG
QPIAQEDLDSDPHKWLLPAKGEWRGGTHLSPDQEGKMAPGRPPKPLEIPT
LDLQVVELAASALGALYRNAVSVVEEEERFEDPRGCSRHSIPAVVGSLVG
CQLALHLYSAMVLCAADGGGGNGRGTGGWAGWVSGKDTGMTEAGMQGAVP
RFQVIFDRPSVVLPQLAGVSMAVDEAIESILGTYYESDLMTFSFAPLYAR
CLKMYIECWRRKDEERMDKEIRDRQSSEREGGEDGQAWLETKLSKGSRWE
GNGSPSLLLQRRGKWRKS
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mRNA from alignment at CM002463.1:519902..523055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=mRNA|length=3154bp|location=Sequence derived from alignment at CM002463.1:519902..523055+ (Nannochloropsis gaditana)
AGGACCCTCGGCGTCTGTTCCAGCGGACGATCATTGgccctgcagctcct ccattgCACATGTACGAAGCGCGCGGCAAGGCCGGCCCGGGTTGGGGAGG cacggagaggaaagaggtctCCCATGCTTTGGTCATTGGGTTGCATCGAA AGCGAATGACCGTGTACATTATCCTCGAGCTGATCCTGACAGTAGGACTC TTTCAGTTTATGGCTAGCTGGCTACGAGGGCGTATTTTGGATTGGGCCGG GTCTGTAATAGTTCAGGGATTGGAATGCTGTCACATGTTTTTGCGGTTGC GGCTACAATCCTGGTGTGTgtgctgcctccgcctgggAGCTTCTGTACTG GCAGGGAGCTGGGTCATGCCGCAAGGCCCTGGAGATTGGACTGCGCTGTT CATGGTGATCGCTGGTCAGGTCTTGAGCCTAAGTTCGCGATACCACTGCA TGTTTGGCGGCGCTGAGCGTCCTATGGCCAAGACGTATCTAATCGGAAGC CATGTGGTGAGTGGCCTTTTGATCAGTGGTGCTTTTCTGAGTCGAGCAGG TGGgcctggtggggagggaatgtTGAGTGCCTGCGAGCTTCGCCACCACG GGATCGCTGTGGCGTTGGCCGGAGTGTTGTCTTGCTTGATTGATGCCCTG GCATATTATAACCGCGGATACCAGTCCACCCGGGGCATTGGGCCTTTCag acgccctccttccggtGGGCGAAGAAGGCGTCTGGTCCTGGCTCGGGGTT ATGATCAGGATCTCTTCGATTTGCACCACTTCCtgtcggggccgggggag gcctCTCaatgggaaggggggctctCAAGCCCGCATTCCAGCATGCTTAT TCCCGATTTGCCACCTAGCCAGtcgctcccttctttcctggGCCCGGAGG CGTCGCAGTGGGCCAGGCGGTGCGGTCACCTCTGGATGCGCTTGTCGGCT ctgtgggaggaaatgggaggCCGAGAGCTtgccggccgcctccttctcac aaGTGTCGGGGTGGCTGCATCGGCGGGGCCTGCCGAGACGTTGCTCGCGA AGGCGAGCGCGCTGATTTTTGGGGAGGACCATCAGTACCACGGCCTTCCC CCGGTGGGATCCTCTTGGCAGGCTCTGCCCAAGGTCGCGTTCACCACAGT GGCCGTTGCGGTCTACGGGTTCTTCACGCTTGGCCGTAGCACCTTGTTGC TCTGCCACCTGCTCCGCCAGCCGGTGGATTTTTCGGCGCTGGGtaaaggg gagagaggaggcgcggAAAGCCTCCTGCATGGGTGGCTGGAGAAAGGCTG GGCAGTGATTTTGCGGGAGCCGAGGCTCGAGCATCCaaacaggggggggg ggcggcgccAGAGTGCGGAAAGCGCCTTCGAAGCCCCGGAGAAGGACATG TGGCGcggagaaatggaggagaccCAGCGCATGTTGTACAGGACGGCAGT ATTGGCGAGTTGGAGCGTCTTCCCGCCGCGCCTCGAGATGTTTGACGTCT CGCGGCAGCCCCTAGGCCCAACGGATAGACTCTACCGCGCACAGGCATTC TTGGACTTGGCTATCCTGGCCCACGGCCAGGTCGAACGGCGACGCCAGGC GTGCTTCAAGGATCGCGGGGTGTGGCGGGCCACGTGCCGGCCTCTGGTCA TGGTGGTGAACGCCCTGACCCTACAGATCGAgctggaaatggaggggtgc gggcgggtggaggggggaatgccGTCCCCCTTGAAGAAGCTGCATGCGCG CCTGGGGCTGGTAGagccagaggaagggaacagCCTCGCTGGCCTGATTG TCGACGCAGAGGTGCAGCGACGGATGGAGGAAGTATGGTCCCGTCGGCGC AGCCATGGACAGCCGATTGCACAAGAGGATCTGGACTCCGACCCTCACAA ATGGCTGTTGCCGGCcaagggggagtggagggggggcacgcacCTGTCAC CTgaccaggaggggaagatggcgcCGGGAAGGCCGCCAAAGCCCCTAGAA ATCCCCACCTTGGActtgcaggtggtggagttGGCAGCATCTGCCTTAGG CGCTTTGTACCGGAACGCGGTGAGTGtggtcgaagaagaagagaggttTG AAGACCCACGGGGCTGCTCCCGGCACAGTATCCCTGCAGTAGTGGGAAGT TTGGTCGGCTGCCAGCTTGCGCTGCATCTGTACAGCGCCATGGTGTTGTG TGCAGCggatggtgggggtgggaatggaagggggacggggggatgggccg gATGGGTGAGTGGCAAGGACACAGGGATGACGGAAGCAGGCATGCAAGGC GCCGTGCCGCGGTTTCAGGTGATTTTCGACCGGCCAAGCGTGGTACTGCC TCAGCTTGCGGGGGTATCGATGGCCGTTGACGAGGCGATCGAATCTATCC TCGGCACCTATTATGAATCAGATTTGATGACATTCAGCTTTGCGCCCCTG TATGCTCGCTGCCTGAAGATGTACATTgagtgctggaggaggaaagatga agAGCGCATGGACAAGGAAATAAGGGACCGTCAAAGctcagagagggagg gcggggaggacgggcaggcgTGGTTGGAGACGAAGCTTTCGAAGGGTAGT AGGTGGGAGGGTAACGGGAGCCCGTCCTTGCTTCTAcagcggaggggaaa atggagaaagTCATAAGCTTGGGAGAAATACAAGAAATGAGCAAAATAAT GCCGTTCCCCGGAAGGTGGCCAGTTGAATGGAGGTCTCTTGCAACTTTGC GGGATTCGCAGTTCAGATTCAAGATGCCGAAAGCCTTTTCATTGCTTTTT ACACCCACGAAATACTTGTCATGCTATGTACAGAGGCCGTGTCGCCACCC GGGACTACtgttcctcgtccttctcgtcctccgcctccctgtgACTCGAG AGGAGGCTGGATGCAGACGATGAGCGTCGCATGCCTTGAGAGGGCCGCCG ACGGATCTTGGACCTAGCCTCCCCGATCGCCTGCTTGATCTCCGCGGata cgccccccccccgctcgtCTCCCTTGCTTGTCTTGGTCTCTTTGTCGCGG GCCACGTGCCGAAGCAATCGCGTCTCCAGCTCACCCAAGGCCTCGGACAG GTACAATTgcaggtcttcctccctgtgccaccctgcttctcccccttcac cacc
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Coding sequence (CDS) from alignment at CM002463.1:519902..523055+

>rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=CDS|length=2607bp|location=Sequence derived from alignment at CM002463.1:519902..523055+ (Nannochloropsis gaditana)
ATGTACGAAGCGCGCGGCAAGGCCGGCCCGGGTTGGGGAGGcacggagag
gaaagaggtctCCCATGCTTTGGTCATTGGGTTGCATCGAAAGCGAATGA
CCGTGTACATTATCCTCGAGCTGATCCTGACAGTAGGACTCTTTCAGTTT
ATGGCTAGCTGGCTACGAGGGCGTATTTTGGATTGGGCCGGGTCTGTAAT
AGTTCAGGGATTGGAATGCTGTCACATGTTTTTGCGGTTGCGGCTACAAT
CCTGGTGTGTgtgctgcctccgcctgggAGCTTCTGTACTGGCAGGGAGC
TGGGTCATGCCGCAAGGCCCTGGAGATTGGACTGCGCTGTTCATGGTGAT
CGCTGGTCAGGTCTTGAGCCTAAGTTCGCGATACCACTGCATGTTTGGCG
GCGCTGAGCGTCCTATGGCCAAGACGTATCTAATCGGAAGCCATGTGGTG
AGTGGCCTTTTGATCAGTGGTGCTTTTCTGAGTCGAGCAGGTGGgcctgg
tggggagggaatgtTGAGTGCCTGCGAGCTTCGCCACCACGGGATCGCTG
TGGCGTTGGCCGGAGTGTTGTCTTGCTTGATTGATGCCCTGGCATATTAT
AACCGCGGATACCAGTCCACCCGGGGCATTGGGCCTTTCagacgccctcc
ttccggtGGGCGAAGAAGGCGTCTGGTCCTGGCTCGGGGTTATGATCAGG
ATCTCTTCGATTTGCACCACTTCCtgtcggggccgggggaggcctCTCaa
tgggaaggggggctctCAAGCCCGCATTCCAGCATGCTTATTCCCGATTT
GCCACCTAGCCAGtcgctcccttctttcctggGCCCGGAGGCGTCGCAGT
GGGCCAGGCGGTGCGGTCACCTCTGGATGCGCTTGTCGGCTctgtgggag
gaaatgggaggCCGAGAGCTtgccggccgcctccttctcacaaGTGTCGG
GGTGGCTGCATCGGCGGGGCCTGCCGAGACGTTGCTCGCGAAGGCGAGCG
CGCTGATTTTTGGGGAGGACCATCAGTACCACGGCCTTCCCCCGGTGGGA
TCCTCTTGGCAGGCTCTGCCCAAGGTCGCGTTCACCACAGTGGCCGTTGC
GGTCTACGGGTTCTTCACGCTTGGCCGTAGCACCTTGTTGCTCTGCCACC
TGCTCCGCCAGCCGGTGGATTTTTCGGCGCTGGGtaaaggggagagagga
ggcgcggAAAGCCTCCTGCATGGGTGGCTGGAGAAAGGCTGGGCAGTGAT
TTTGCGGGAGCCGAGGCTCGAGCATCCaaacagggggggggggcggcgcc
AGAGTGCGGAAAGCGCCTTCGAAGCCCCGGAGAAGGACATGTGGCGcgga
gaaatggaggagaccCAGCGCATGTTGTACAGGACGGCAGTATTGGCGAG
TTGGAGCGTCTTCCCGCCGCGCCTCGAGATGTTTGACGTCTCGCGGCAGC
CCCTAGGCCCAACGGATAGACTCTACCGCGCACAGGCATTCTTGGACTTG
GCTATCCTGGCCCACGGCCAGGTCGAACGGCGACGCCAGGCGTGCTTCAA
GGATCGCGGGGTGTGGCGGGCCACGTGCCGGCCTCTGGTCATGGTGGTGA
ACGCCCTGACCCTACAGATCGAgctggaaatggaggggtgcgggcgggtg
gaggggggaatgccGTCCCCCTTGAAGAAGCTGCATGCGCGCCTGGGGCT
GGTAGagccagaggaagggaacagCCTCGCTGGCCTGATTGTCGACGCAG
AGGTGCAGCGACGGATGGAGGAAGTATGGTCCCGTCGGCGCAGCCATGGA
CAGCCGATTGCACAAGAGGATCTGGACTCCGACCCTCACAAATGGCTGTT
GCCGGCcaagggggagtggagggggggcacgcacCTGTCACCTgaccagg
aggggaagatggcgcCGGGAAGGCCGCCAAAGCCCCTAGAAATCCCCACC
TTGGActtgcaggtggtggagttGGCAGCATCTGCCTTAGGCGCTTTGTA
CCGGAACGCGGTGAGTGtggtcgaagaagaagagaggttTGAAGACCCAC
GGGGCTGCTCCCGGCACAGTATCCCTGCAGTAGTGGGAAGTTTGGTCGGC
TGCCAGCTTGCGCTGCATCTGTACAGCGCCATGGTGTTGTGTGCAGCgga
tggtgggggtgggaatggaagggggacggggggatgggccggATGGGTGA
GTGGCAAGGACACAGGGATGACGGAAGCAGGCATGCAAGGCGCCGTGCCG
CGGTTTCAGGTGATTTTCGACCGGCCAAGCGTGGTACTGCCTCAGCTTGC
GGGGGTATCGATGGCCGTTGACGAGGCGATCGAATCTATCCTCGGCACCT
ATTATGAATCAGATTTGATGACATTCAGCTTTGCGCCCCTGTATGCTCGC
TGCCTGAAGATGTACATTgagtgctggaggaggaaagatgaagAGCGCAT
GGACAAGGAAATAAGGGACCGTCAAAGctcagagagggagggcggggagg
acgggcaggcgTGGTTGGAGACGAAGCTTTCGAAGGGTAGTAGGTGGGAG
GGTAACGGGAGCCCGTCCTTGCTTCTAcagcggaggggaaaatggagaaa
gTCATAA
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Synonyms
Publications