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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100073g2.10386.mrna |
Orig protein id | gnl|cribi|Naga_100073g2.10386 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002463.1 | supercontig | CM002463.1:519902..523055 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=mRNA|length=3549bp TTTGGTGACTGTACGGAGTATGCAGTAGGCAATTCTGAGAAGGTCTGCGC CCTGGAATGCTGAAAATGGTCGAAGCGAAAGCCGACATCCTTCGTACATG TCAGCCCTTTTTTTCCATTCTCACGCTCTCACTCCCGTAAGCAGATAAAA ATTGATTACGATCTCCTGGGATATTTTCTAAAGCCTGTGCATGGGGACGA GCGCATCTAAGTTTGGGCAGTATGAGGCGAACCGTGGAGGGCTTAGTCCA AGTGTGGTCGAGCTCGGTGCCGAAGCCAGTGCGATATTCTTTGCTGTTTT TTTCACTGCCTATACCGTAGCCCACTGGCGCAATTGGTTACCCAAGGTTT TCGCCTCGCGCCGTTTTCTCTATCCCAAGCGCACCTTCCCTTTCGAGACC CCACCCCGTCGCCGCCATCTCTTCAGCTGGCTGGTGGATTCATGGACGGT GGGAGACAAGGACATCTTGCGTTATTACGGACTGGACGCCCTTCTCTTCC TGCGCTCTTTACGACTGCAATCCTTAGTCATTCTTCTCTGCTCCTTGTAT GGGCTCTGTGTGATTTTGCCGGTCAACATGCAGGGCCAAGCCGTCTTCAC CTCGCCTCCGTGGGGCGCAGCCTACACCACTGCCCACATCGGGCCCCTGG CGTCGGTGGCGCCATCTTCTCCCGCAGACCCCGACAGCCCCACGCTTGGC ACGCCGCCACCATCTTCCTCCGAGCCCGAGGATGTGACGCGCTTGTTCCT GGTGCACGTGCTGGGGGCTTACTATATGACAGGCGTCTGTCTCTATTTGC TCTGGCGGCAGTACCAAGAGTACCTCTCTCTCCGCCACGCCTTCCGACAG CGGCCCGACCCCGCCAATTATACCATTATGGTTCACCATATACCTGGCTC CATGCGCAGCAACACAGCCGTCAGCGCCTACTTTGACGCCCTCTTTCCCG GGTCCGTGCAGAAGGTGACCCTCATGCTGGAACTTCCGGAGCTGGAAGCC CTGATTCGAAAGCGCGACCGGGTCGCCCATCGCTTGGAGTGGGCTTTGGT CGTGCAAGGGGACCTGTCCAAGCTCCGATGCGCCTGGACGAGAAAGCCCG CGAGCATCGACGTCTTGGTGGAGGAGCTGCGGGAGGTAAGGAGAGGGGGG CCACGGTGGGGATCGAAGGGGAAGGAACGCGACTTGGTATTGGCGGCTTG AATGGGCCAAGCCTTGTTAATCTCTCTTCCATATACTCTTCGGGGAATCT GTGAGCTGCGCCTAAGGTCCTTGCTCCCCCCTCCCCCTTTTTTTGGGGGG TTCCTGTCTCGCAGGAATTGCCGCGTTTGGAGTCCCAGGTGGCAGAATGG CAAGAAGAACTCATGGATTGGCACGTCCGGCACGAGCGCTTCTCCCGACG CGCGCCCTTGGAGGCTGGGTCGGGGAGGGGAGGTAGGACTTTGGATGAGC TAGAGGGGGAGGAGGGCGTTGATTTGAGCTTGAGCGCCAGTACGACGATT AGCGGCGGGGAGGAGGAGGCGGGGCAGGATGGGAGCAGCGGGTTGGACGA AGAGGACGGGGAAGAAGAGGAAGGGGCCCAGCAGGACCCAATGCGGGAGG CGCTCCTGAAGGAGTCAGCAGGAGGGAGGCTGGAAACGGGCATGGCGCCT GGCCAACGGCGTGGCAAGGCCGGCCACAGCGCAAGGCGGTCGGCGAGGCG TGGGGTAGGGGCGGGGCTGGACGAGGAGGACTACGTGCAAAGCGGGGAGG AAGGGGAGGGGAGGTCGGAGGAGGGGCGTCCGAGCGGATTGATCCCACCC TGGGTGCAGGGGTGGCACGGGCGTGCTCGGAGGGAGATGGGGCGAGGGCA GGCCGAGAGGGACAAGGTAGAGGCGCAGGAGGAGGGGCAGGCGAGGATTA GGCGCCCGAAAGCAAGGAGGGAGCGCTCCAAGGGGCTGCGGCTTCTGCGG GAGAAGACCTTTCGAATGATCACGGGGAACCCGGCGGGGGCCATCGCCTT TGTCAGCTTCCGCTCCTTGGCGGTGGCGAGCGTGGCAGGCCAATGCGTCA CGTACCGGCATCCCTTGAAGATGATGACCAAGCCCGCCCCTGCGCCCGCG GACATCATCTGGACTAACGCCTACATGCCCATGCGCCTTCTCCCCATCAA AACCGTCCTCGGCGTCGGGTCCTCCGTGGTCGTCACGCTCTTCTTCTCCG TCATCGTCGGCATCATCGCCTCCCTCACCAACGTGCAGACCCTCCACGAC CATGTCCCCTTCATGCGAAATTTCCTTGAAAAGTCCAAACTGGCGCAAGA GCTTCTCCCCTACCTGCCGGCCTTCCTCCTGGTCATGGTCGATTGCACCA TTCCTCCCATCCTCTCCCTCTTGGCCCGCGTCGTTTTCCGCGAAGTCAGG ACCGTCAGCGAGGCGCACGTGACTGTCTTCCGCCGCCTGTACCTCTTCCT CATGTACAACAACTTTCTCATCCTCTTTCTCTCCTCCTCCCTGAACACCT ACTACGCCATCGTCGAGGACCCCCATCTGACCCTGGTCGAGCTCGGAATC TTTCTGCCCAACATTTCCTCTTTCTACATTGCCTACATCATGATTAAAGT CTTGTGCTCGCACCCTATGGAGCTTTCCAGGATGTCCTCCTTCTTCGTGG CGGGCATTCGCTGGTTCTTCACGGACGACCTGACCGAGGCACAGAAGGCG GCTCGAATCTTGGGGTGCAACGCGCTGGAGCGGCCGGGAGGATTTTATTA CGGACGAATCTACGCGGACAACCTCTTCGTCTTCACCATCACCATGACCT TCGCGTTGGTGGCGCCCTTGATCCTCCCCTTCGCCCTCGCCTTTTTCGTC GGGGCCCTGGTCGTCTACAAGCGTGTCCTCCTCTTTGTGTACGAGCCTGA GTTCGAGAGCTGCGGGACCTTCTGGCCCAAGACCTACCGGCGGATGGTGG CAGCCCTCTACTTTATGCAGTGCGCCTTGCTTTGCATCCTGATAACCAAC GAAGCCTTCGAGGAGGTCGCCTGGTTGGCCCCGCTCCCTCTCCTCACCCT GCTCGCCTCCCTCGTTATCACTCGCTCTTACAAGGAGGCTGCCGCGCACC TTCCTCTCTCGGTCGCGATGGAGATGGACGAGTTGCACAAATCCTGGGGG GAGACGTACGGGTTTCTCAATCACTCGTACATCCAGCCAGCGCTTCAGCC CCTGAAGACCTCCCACGGCCTGGTCGGAGTTGGCTCGTGTCGACCTTACG AGCCTCCCACGACCGTCGCACCCGCACCCTCTACGGCGCCTCCGGTACCG GTGGTGCCCGCTGCTGCCGGTCCCTCCCTGGTGATAGAGTCAGGAGCCAC GCCTGCCGAAAAGCAGGAGCACGGCATCCCCGACGCGAATCCCACCACGG CCATGAACGGGGCTCTCGCAGAGACGAACGAAATCGCAGTGAGCAATGAC GGCAATTAGCAAGAAGAGGAATACGCCACGGACGTACACAGGGAGTCAAG TAATGCATGTACATAAACGTATGAAAATGATTCACTTGACCGCTTTACC back to topprotein sequence of rna4407 >rna4407-protein ID=rna4407-protein|Name=rna4407|organism=Nannochloropsis gaditana|type=polypeptide|length=868bp MYEARGKAGPGWGGTERKEVSHALVIGLHRKRMTVYIILELILTVGLFQF MASWLRGRILDWAGSVIVQGLECCHMFLRLRLQSWCVCCLRLGASVLAGS WVMPQGPGDWTALFMVIAGQVLSLSSRYHCMFGGAERPMAKTYLIGSHVV SGLLISGAFLSRAGGPGGEGMLSACELRHHGIAVALAGVLSCLIDALAYY NRGYQSTRGIGPFRRPPSGGRRRRLVLARGYDQDLFDLHHFLSGPGEASQ WEGGLSSPHSSMLIPDLPPSQSLPSFLGPEASQWARRCGHLWMRLSALWE EMGGRELAGRLLLTSVGVAASAGPAETLLAKASALIFGEDHQYHGLPPVG SSWQALPKVAFTTVAVAVYGFFTLGRSTLLLCHLLRQPVDFSALGKGERG GAESLLHGWLEKGWAVILREPRLEHPNRGGGRRQSAESAFEAPEKDMWRG EMEETQRMLYRTAVLASWSVFPPRLEMFDVSRQPLGPTDRLYRAQAFLDL AILAHGQVERRRQACFKDRGVWRATCRPLVMVVNALTLQIELEMEGCGRV EGGMPSPLKKLHARLGLVEPEEGNSLAGLIVDAEVQRRMEEVWSRRRSHG QPIAQEDLDSDPHKWLLPAKGEWRGGTHLSPDQEGKMAPGRPPKPLEIPT LDLQVVELAASALGALYRNAVSVVEEEERFEDPRGCSRHSIPAVVGSLVG CQLALHLYSAMVLCAADGGGGNGRGTGGWAGWVSGKDTGMTEAGMQGAVP RFQVIFDRPSVVLPQLAGVSMAVDEAIESILGTYYESDLMTFSFAPLYAR CLKMYIECWRRKDEERMDKEIRDRQSSEREGGEDGQAWLETKLSKGSRWE GNGSPSLLLQRRGKWRKS back to topmRNA from alignment at CM002463.1:519902..523055+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=mRNA|length=3154bp|location=Sequence derived from alignment at CM002463.1:519902..523055+ (Nannochloropsis gaditana) AGGACCCTCGGCGTCTGTTCCAGCGGACGATCATTGgccctgcagctcct
ccattgCACATGTACGAAGCGCGCGGCAAGGCCGGCCCGGGTTGGGGAGG
cacggagaggaaagaggtctCCCATGCTTTGGTCATTGGGTTGCATCGAA
AGCGAATGACCGTGTACATTATCCTCGAGCTGATCCTGACAGTAGGACTC
TTTCAGTTTATGGCTAGCTGGCTACGAGGGCGTATTTTGGATTGGGCCGG
GTCTGTAATAGTTCAGGGATTGGAATGCTGTCACATGTTTTTGCGGTTGC
GGCTACAATCCTGGTGTGTgtgctgcctccgcctgggAGCTTCTGTACTG
GCAGGGAGCTGGGTCATGCCGCAAGGCCCTGGAGATTGGACTGCGCTGTT
CATGGTGATCGCTGGTCAGGTCTTGAGCCTAAGTTCGCGATACCACTGCA
TGTTTGGCGGCGCTGAGCGTCCTATGGCCAAGACGTATCTAATCGGAAGC
CATGTGGTGAGTGGCCTTTTGATCAGTGGTGCTTTTCTGAGTCGAGCAGG
TGGgcctggtggggagggaatgtTGAGTGCCTGCGAGCTTCGCCACCACG
GGATCGCTGTGGCGTTGGCCGGAGTGTTGTCTTGCTTGATTGATGCCCTG
GCATATTATAACCGCGGATACCAGTCCACCCGGGGCATTGGGCCTTTCag
acgccctccttccggtGGGCGAAGAAGGCGTCTGGTCCTGGCTCGGGGTT
ATGATCAGGATCTCTTCGATTTGCACCACTTCCtgtcggggccgggggag
gcctCTCaatgggaaggggggctctCAAGCCCGCATTCCAGCATGCTTAT
TCCCGATTTGCCACCTAGCCAGtcgctcccttctttcctggGCCCGGAGG
CGTCGCAGTGGGCCAGGCGGTGCGGTCACCTCTGGATGCGCTTGTCGGCT
ctgtgggaggaaatgggaggCCGAGAGCTtgccggccgcctccttctcac
aaGTGTCGGGGTGGCTGCATCGGCGGGGCCTGCCGAGACGTTGCTCGCGA
AGGCGAGCGCGCTGATTTTTGGGGAGGACCATCAGTACCACGGCCTTCCC
CCGGTGGGATCCTCTTGGCAGGCTCTGCCCAAGGTCGCGTTCACCACAGT
GGCCGTTGCGGTCTACGGGTTCTTCACGCTTGGCCGTAGCACCTTGTTGC
TCTGCCACCTGCTCCGCCAGCCGGTGGATTTTTCGGCGCTGGGtaaaggg
gagagaggaggcgcggAAAGCCTCCTGCATGGGTGGCTGGAGAAAGGCTG
GGCAGTGATTTTGCGGGAGCCGAGGCTCGAGCATCCaaacaggggggggg
ggcggcgccAGAGTGCGGAAAGCGCCTTCGAAGCCCCGGAGAAGGACATG
TGGCGcggagaaatggaggagaccCAGCGCATGTTGTACAGGACGGCAGT
ATTGGCGAGTTGGAGCGTCTTCCCGCCGCGCCTCGAGATGTTTGACGTCT
CGCGGCAGCCCCTAGGCCCAACGGATAGACTCTACCGCGCACAGGCATTC
TTGGACTTGGCTATCCTGGCCCACGGCCAGGTCGAACGGCGACGCCAGGC
GTGCTTCAAGGATCGCGGGGTGTGGCGGGCCACGTGCCGGCCTCTGGTCA
TGGTGGTGAACGCCCTGACCCTACAGATCGAgctggaaatggaggggtgc
gggcgggtggaggggggaatgccGTCCCCCTTGAAGAAGCTGCATGCGCG
CCTGGGGCTGGTAGagccagaggaagggaacagCCTCGCTGGCCTGATTG
TCGACGCAGAGGTGCAGCGACGGATGGAGGAAGTATGGTCCCGTCGGCGC
AGCCATGGACAGCCGATTGCACAAGAGGATCTGGACTCCGACCCTCACAA
ATGGCTGTTGCCGGCcaagggggagtggagggggggcacgcacCTGTCAC
CTgaccaggaggggaagatggcgcCGGGAAGGCCGCCAAAGCCCCTAGAA
ATCCCCACCTTGGActtgcaggtggtggagttGGCAGCATCTGCCTTAGG
CGCTTTGTACCGGAACGCGGTGAGTGtggtcgaagaagaagagaggttTG
AAGACCCACGGGGCTGCTCCCGGCACAGTATCCCTGCAGTAGTGGGAAGT
TTGGTCGGCTGCCAGCTTGCGCTGCATCTGTACAGCGCCATGGTGTTGTG
TGCAGCggatggtgggggtgggaatggaagggggacggggggatgggccg
gATGGGTGAGTGGCAAGGACACAGGGATGACGGAAGCAGGCATGCAAGGC
GCCGTGCCGCGGTTTCAGGTGATTTTCGACCGGCCAAGCGTGGTACTGCC
TCAGCTTGCGGGGGTATCGATGGCCGTTGACGAGGCGATCGAATCTATCC
TCGGCACCTATTATGAATCAGATTTGATGACATTCAGCTTTGCGCCCCTG
TATGCTCGCTGCCTGAAGATGTACATTgagtgctggaggaggaaagatga
agAGCGCATGGACAAGGAAATAAGGGACCGTCAAAGctcagagagggagg
gcggggaggacgggcaggcgTGGTTGGAGACGAAGCTTTCGAAGGGTAGT
AGGTGGGAGGGTAACGGGAGCCCGTCCTTGCTTCTAcagcggaggggaaa
atggagaaagTCATAAGCTTGGGAGAAATACAAGAAATGAGCAAAATAAT
GCCGTTCCCCGGAAGGTGGCCAGTTGAATGGAGGTCTCTTGCAACTTTGC
GGGATTCGCAGTTCAGATTCAAGATGCCGAAAGCCTTTTCATTGCTTTTT
ACACCCACGAAATACTTGTCATGCTATGTACAGAGGCCGTGTCGCCACCC
GGGACTACtgttcctcgtccttctcgtcctccgcctccctgtgACTCGAG
AGGAGGCTGGATGCAGACGATGAGCGTCGCATGCCTTGAGAGGGCCGCCG
ACGGATCTTGGACCTAGCCTCCCCGATCGCCTGCTTGATCTCCGCGGata
cgccccccccccgctcgtCTCCCTTGCTTGTCTTGGTCTCTTTGTCGCGG
GCCACGTGCCGAAGCAATCGCGTCTCCAGCTCACCCAAGGCCTCGGACAG
GTACAATTgcaggtcttcctccctgtgccaccctgcttctcccccttcac
cacc back to topCoding sequence (CDS) from alignment at CM002463.1:519902..523055+ >rna4407 ID=rna4407|Name=rna4407|organism=Nannochloropsis gaditana|type=CDS|length=2607bp|location=Sequence derived from alignment at CM002463.1:519902..523055+ (Nannochloropsis gaditana) ATGTACGAAGCGCGCGGCAAGGCCGGCCCGGGTTGGGGAGGcacggagag gaaagaggtctCCCATGCTTTGGTCATTGGGTTGCATCGAAAGCGAATGA CCGTGTACATTATCCTCGAGCTGATCCTGACAGTAGGACTCTTTCAGTTT ATGGCTAGCTGGCTACGAGGGCGTATTTTGGATTGGGCCGGGTCTGTAAT AGTTCAGGGATTGGAATGCTGTCACATGTTTTTGCGGTTGCGGCTACAAT CCTGGTGTGTgtgctgcctccgcctgggAGCTTCTGTACTGGCAGGGAGC TGGGTCATGCCGCAAGGCCCTGGAGATTGGACTGCGCTGTTCATGGTGAT CGCTGGTCAGGTCTTGAGCCTAAGTTCGCGATACCACTGCATGTTTGGCG GCGCTGAGCGTCCTATGGCCAAGACGTATCTAATCGGAAGCCATGTGGTG AGTGGCCTTTTGATCAGTGGTGCTTTTCTGAGTCGAGCAGGTGGgcctgg tggggagggaatgtTGAGTGCCTGCGAGCTTCGCCACCACGGGATCGCTG TGGCGTTGGCCGGAGTGTTGTCTTGCTTGATTGATGCCCTGGCATATTAT AACCGCGGATACCAGTCCACCCGGGGCATTGGGCCTTTCagacgccctcc ttccggtGGGCGAAGAAGGCGTCTGGTCCTGGCTCGGGGTTATGATCAGG ATCTCTTCGATTTGCACCACTTCCtgtcggggccgggggaggcctCTCaa tgggaaggggggctctCAAGCCCGCATTCCAGCATGCTTATTCCCGATTT GCCACCTAGCCAGtcgctcccttctttcctggGCCCGGAGGCGTCGCAGT GGGCCAGGCGGTGCGGTCACCTCTGGATGCGCTTGTCGGCTctgtgggag gaaatgggaggCCGAGAGCTtgccggccgcctccttctcacaaGTGTCGG GGTGGCTGCATCGGCGGGGCCTGCCGAGACGTTGCTCGCGAAGGCGAGCG CGCTGATTTTTGGGGAGGACCATCAGTACCACGGCCTTCCCCCGGTGGGA TCCTCTTGGCAGGCTCTGCCCAAGGTCGCGTTCACCACAGTGGCCGTTGC GGTCTACGGGTTCTTCACGCTTGGCCGTAGCACCTTGTTGCTCTGCCACC TGCTCCGCCAGCCGGTGGATTTTTCGGCGCTGGGtaaaggggagagagga ggcgcggAAAGCCTCCTGCATGGGTGGCTGGAGAAAGGCTGGGCAGTGAT TTTGCGGGAGCCGAGGCTCGAGCATCCaaacagggggggggggcggcgcc AGAGTGCGGAAAGCGCCTTCGAAGCCCCGGAGAAGGACATGTGGCGcgga gaaatggaggagaccCAGCGCATGTTGTACAGGACGGCAGTATTGGCGAG TTGGAGCGTCTTCCCGCCGCGCCTCGAGATGTTTGACGTCTCGCGGCAGC CCCTAGGCCCAACGGATAGACTCTACCGCGCACAGGCATTCTTGGACTTG GCTATCCTGGCCCACGGCCAGGTCGAACGGCGACGCCAGGCGTGCTTCAA GGATCGCGGGGTGTGGCGGGCCACGTGCCGGCCTCTGGTCATGGTGGTGA ACGCCCTGACCCTACAGATCGAgctggaaatggaggggtgcgggcgggtg gaggggggaatgccGTCCCCCTTGAAGAAGCTGCATGCGCGCCTGGGGCT GGTAGagccagaggaagggaacagCCTCGCTGGCCTGATTGTCGACGCAG AGGTGCAGCGACGGATGGAGGAAGTATGGTCCCGTCGGCGCAGCCATGGA CAGCCGATTGCACAAGAGGATCTGGACTCCGACCCTCACAAATGGCTGTT GCCGGCcaagggggagtggagggggggcacgcacCTGTCACCTgaccagg aggggaagatggcgcCGGGAAGGCCGCCAAAGCCCCTAGAAATCCCCACC TTGGActtgcaggtggtggagttGGCAGCATCTGCCTTAGGCGCTTTGTA CCGGAACGCGGTGAGTGtggtcgaagaagaagagaggttTGAAGACCCAC GGGGCTGCTCCCGGCACAGTATCCCTGCAGTAGTGGGAAGTTTGGTCGGC TGCCAGCTTGCGCTGCATCTGTACAGCGCCATGGTGTTGTGTGCAGCgga tggtgggggtgggaatggaagggggacggggggatgggccggATGGGTGA GTGGCAAGGACACAGGGATGACGGAAGCAGGCATGCAAGGCGCCGTGCCG CGGTTTCAGGTGATTTTCGACCGGCCAAGCGTGGTACTGCCTCAGCTTGC GGGGGTATCGATGGCCGTTGACGAGGCGATCGAATCTATCCTCGGCACCT ATTATGAATCAGATTTGATGACATTCAGCTTTGCGCCCCTGTATGCTCGC TGCCTGAAGATGTACATTgagtgctggaggaggaaagatgaagAGCGCAT GGACAAGGAAATAAGGGACCGTCAAAGctcagagagggagggcggggagg acgggcaggcgTGGTTGGAGACGAAGCTTTCGAAGGGTAGTAGGTGGGAG GGTAACGGGAGCCCGTCCTTGCTTCTAcagcggaggggaaaatggagaaa gTCATAA back to top
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