rna4398, rna4398 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4398
Unique Name	rna4398
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2955
Alignment location	CM002463.1:490064..492604 +

Link to JBrowse

Properties


Property Name	Value
Product	stress-induced protein sti1
Orig transcript id	gnl\|cribi\|Naga_100073g12.10390.mrna
Orig protein id	gnl\|cribi\|Naga_100073g12.10390
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:490064..492604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100073g12	gene4242	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4398	rna4398-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26282.1	cds4388	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:490064..492604+
coding sequence from alignment at CM002463.1:490064..492604+

mRNA sequence

>rna4398 ID=rna4398|Name=rna4398|organism=Nannochloropsis gaditana|type=mRNA|length=2955bp
GGAACGAAGCGCCGTGTCTTAATAATGGTGCAGTATGGCATTGATCCAGG
TGCTGAAAGTCATGTAGGTAGTGCAAATTGCGGTGATAATTCCATGGTGG
TGGCCGTGCGAATTCGACCCATGTCGACGAAGGAAATGCAGTCTGGCGCG
CAAAAGTGTTGTAAGGTGGTCAATGGGCGCTATGTGATCATCTCAAAAGC
AGGGATTGCAGGTCGCTATTTGAGATCGCAGCAAGGATCATCTAACGAAT
ACGCCTTCGACGTGGCATTCGACGCAGACGCCACTCAAGCCGAGGTCTAC
GAGCAAACGGCCAAAATGCACGTTCCCTCCGTCTTGGACGGCTACAATGT
CTCCATTCTTGCGTATGGAGCAACAGGGGCGGGGAAGACCTTTACGATGA
TGGGCAGTTCTTGTGCAGCCGCAGGCGAGTCTGCTCCCGTCACAGGCGTC
ATCCCCCAGTCCCTCTCAGATGTATTCGCTACCATAGAAAGACGGAAACG
CACGGCGCCACCCAACAGCCAATGGCAAGTATTCTGCTCCTACATGGAAG
TTTACAACGAGCAGATCTACGATTTGATAGGCCCGGGGGCGGGGCGAGGT
CAGCCTCTGCAGCTGCGGGAGGATCCGTCCAAGGGGGTTGTAGTGGTAGC
CGGTTTGCCCGAAATGCTGGTGCGCGACACCGCCCAAGTACTGGATTTGC
TTCGACAGGGAAACCGCAACCGGAAGACAGAGGCGACCGCGGCCAATCAA
GTCTCCTCCCGCTCGCACGCGGTCCTGCAGATATGCGTCCGTTTCTCGAC
CGTGGACGCAGCCGGCCACGACCTCGGGCGAGAGTCTCGCCTGTCTTTGA
TTGACCTAGCGGGGTCGGAACGGGCCTCGGCGACCCTGAACCGTGGGGCC
CGGCTGCAAGAGGGTGCGAATATCAATAAATCCCTTTTGGCTCTGGCAAA
CTGCATCAACGCTCTGTCGGAGAACTCAGGGGGGGGGAAAGCAAACAATG
TCAAGTACCGTGATTCCAAGCTCACTCACCTCCTCAAGACCTCGCTGGAA
GGACAATGCAAGGTGGTCATGCTCGTGAATGTCAACCCCTGCGACGCCGT
CTTTGACGACAGCCACAATGCCATAAAATATGGGCACCGGGCCAAGCAAA
TCAAAATCCGGCCAGGGGAAGTGAAGATGCACCTGCAAGAGGCCCCGTGG
CATGAGCGCGAGGCCAGGTTGAAGGCGGACAATGAGGCCATGCGGCGAGA
GCTTGAGGAGCTCAAGTCTTTATTAGTCAGTCAGCAACACACGCAACAAC
AGCCGTACACTGGGCGGGAAGGCACGGCCGCATCCAAGTCGTCAACGCTC
CACTATGGAAACCCCCACCCCAGCCATGCCCGGCTGCCCTACGGCGTATC
GGAGGGAGGCGGGATCATGGGGATGTCAACTCTCATGGACGTTGAAGAGG
AAGAAGAAGAAGACGAGTATGGTCATGGCACGAATTCCAGTCACTATGCG
ACGGATACGGGCTCACATTCGGGCTCCTCCCATTCCCAGCTTGGCAGAGA
CAAGCCCTTGGGGGGGGCAGACGCGTCAGTCTACACCGGAGACACACCGG
TCCACCACCGGGTCCGCGAGCTTGAGACCGTTCTACAAGAGATGACCCGC
ACGCGCAAGCTTCAGCAACAATTCGTGGCAAACTTGGAGGCGCATAAGCA
GGAGAAAGACGAAGAACTTCAAGGTCAGCGGCGTCTGGTCCGGTCGTTAC
AGAACGAGCTGCGGGAGAGAGAGCAAGAAAGCCAGTCCTTACGGGAGATG
GTCATTCATTTGCGAACACGCCTCGAATCGGCGAAACATACCAATTACGC
GTTCACCGACGAGGATGACGACATGGTCGTTTTCCCCCCTCGTATCAGGC
ATACATCGGTGACTGACGCCCCTCTCAGTAGCGACACGGAAGCCTCGGTA
GCTGCGACCGTGCCAAATCGGCCAGAGTTCAAACGAGCCCGCGCCAGCAA
TTCTCGCGGAAGGAGCAGCGTGCCCATGGTCGAAGCCCTGGAAGATATGT
TCTCTCCCATCAAGACGGTGGCAGTACTCGGGGCTGCGGCAGGCGGCCAC
TCCACCGCGACGACTGCTGGAAGCGCGTCGGGGTCGGGATCGGCGCCGGG
CTTCACAGCGAAACGGAAATCGAGCATGGCGACACGGGAATGTGGCAGTG
GGGCCACGACTGCAGCAAAAGAATCCTCTGCAAAGGCACCTCCATCCGCC
GCAGGGCCAGCGAATATGTCTCCCGTAACAACGCTTCGGAAGACGGGTGT
GAAACGACGGCAAAGCCAAATCCCTCGACCCGCATTTCAGTATTCCACGC
GGCGGGCCTCGATCCTTTCCTCAACCAACACCGCTTCTGACAAAGCACCT
ACAGACGGGTCTTCTTCTCGCTTGCCTTCTGGAAAGGATAGGCTTGAGGA
TGCACCCGACCGGATGACCAAGAGCGGTACATCCTCCAAAAAGCGAACTT
GGGGAAATGCCTTGAACAAGGAAAACGTATCATCCGCCCCCCCTGTTCTC
CCAACAGCCTCTTTGAACGCCGCAAATCGACATGTCAAGCGTCGCGAGTC
CAGCATTTACAAAAGTGTGAGTATGGTAAATGGTCAGAGCAATGCCTCAA
CCGTCGCATTACGGACTCGAAGCAGGATGAGTACAGGACCCGGCGCCCGT
TTTTGATGAAAGTGTAGACTTGTTCCGGGTCGTTCCGGGTCGAGAAATAT
CGAACACAGTATTGAACCACGGAAACATGGCATCAAAGCCGTAGGCCGAC
CGGGATGTTCTAGATTAGAGTCTTTAAAGTGTACATGCATTTCATAGTCG
AAAAGAAGAGGACTCTCAAATGCGTAAAATGCTGATGAGAGCCTTTACAG
AAACAAACATTTCCAGCGCATTCGTCGAGGAAAGTAATCTTGTTGCGGGT
CTATG

protein sequence of rna4398

>rna4398-protein ID=rna4398-protein|Name=rna4398|organism=Nannochloropsis gaditana|type=polypeptide|length=572bp
MTSVEAETHKAAGNKALQAKDYDEAIKCYTQALEVSAALPVTGEGAAPRH
VYFSNRSAAYLSKGDAAAALEDAEQCIKANPTWPKGFSRKGAALHTMKRY
DEAQAAYEGGLEVAPDDAGLASALEDVKKVKESSNKPRVNPLASIFAPEN
VARLAGHPVFCKYLLDSEFMAKIKLIQTDPNAFNTILQDKRIMDVFGFLT
GIDMRAGDMDEQESEASTVKKEAAPAPAPAPEPAEEDLSEAEREERKRKH
EALEAKERGNQHYMKKEFVEALAAYEDAIVKDPSNMAFLTNKAAVFFEQG
DFTKTVAQCDEAIQVGRANRAPYPDVAKALVRKGKALAKQGDLANAIEAY
RDAQMEHFDKTVERLIKSTEVERKKQEELAYVDPAKAVEAKDRGNEAFRA
GKWPDAVKEYNEAIRRDPSNAAYHNNLAAALSKLMDFSAAKTACEKAIAL
DPKYVKAWAKKGDIEFFMKEYHRALESYKHGLEIEPNNSLCVQGLQKTSA
RIRDASSQEADMERAAHGMADPEVQAILGDPVIQQVLRDLQENPREGRQA
LSDPGVAAKIEKLINAGVLRTK

mRNA from alignment at CM002463.1:490064..492604+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4398 ID=rna4398|Name=rna4398|organism=Nannochloropsis gaditana|type=mRNA|length=2541bp|location=Sequence derived from alignment at CM002463.1:490064..492604+ (Nannochloropsis gaditana)
TGCCCGCAGGCCGCGTGACTCGCCAACCTCAGCCTTGCAGGGGTCCGAAA
AAGTTCAAATTCCCCATTCCCGCCTAGCTACGAGACGTGTTGGGAAAAGG
GCACAAGGACGAAAGAGCCCGAGGGCgtttcggtccacaaataAGGAGGA
GACCTCGGTCTACAAATAAAGGGGAGatctcggtccacaaaaaGCCGCGA
GGTCTCACActgtgatggaaaagatgcCCGAGTGGTGGAATGTTCTTTGA
CCACAGAGGAAGTTTGTCGACTTTGGAGCGACTGAGTGAGATATGGATTT
GGACGCAATTGCCATAAATTTGTTGGAAAACGACTGGGCCGGGAAAAATG
ACTCTTTCTCCTGTATTTTATTTGGCGTTCTGAGATTTTTTCAGCGCTGA
GATcatttccacctccctttgTTTCAGCATATTTGAAGCCCTTCAGGTAA
CGACTTGGTCTTCCTGTCCGTCTCGATTGATCCATGACAAGCGTAGAGGC
AGAGACACACAAAGCGGCGGGGAACAAGGCACTTCAAGCCAAGGACTACG
ATGAAGCTATCAAATGCTACACGCAAGCACTCGAGGTGAGCGCAGCCCTA
CCCGTAacaggggaaggagctgcTCCCCGACATGTGTACTTCTCCAACCG
ATCGGCTGCCTATCTTTCCAAGGGAGATGCCGCTGCCGCTTTGGAAGATG
CTGAGCAATGCATCAAAGCGAACCCTACGTGGCCCAAAGGATTTTCACGG
AAAGGCGCTGCATTGCACACCATGAAGCGCTACGATGAAGCCCAAGCGGC
TTATGAAGGAGGTCTTGAGGTGGCTCCCGACGACGCCGGGCTCGCATCTG
CTCTAGAAGACGTTAAgaaggtgaaggagagcagCAACAAGCCGCGCGTC
AACCCCTTGGCATCGATCTTCGCGCCTGAGAACGTGGCGCGGTTGGCGGG
GCACCCAGTTTTTTGCAAGTACTTGCTGGACTCGGAGTTTATGGCCAAGA
TCAAGCTGATACAGACAGACCCGAATGCGTTCAATACGATCCTGCAGGAC
AAGCGAATCATGGACGTGTTTGGGTTCTTGACAGGCATTGACATGCGGGC
CGGGGATATGGACGAGCAGGAGAGTGAGGCCTCCACCGTCAAGAAAGAgg
cggccccggcccccgcgcccgcccctgagcccgcggaggaggatctgAGC
GAAGCCGAGCGAGAAGAgcggaaaagaaagcacgaggccctggaggcgaA
AGAGCGAGGCAACCAGCATTacatgaagaaggagttcgtggaggcgctgg
ctgCCTATGAGGATGCCATCGTAAAAGACCCCTCGAACATGGCCTTCCTG
ACCAACAAGGCTGCCGTCTTTTTTGAGCAGGGAGACTTTACCAAAACAGT
GGCACAGTGCGACGAAGCCATCCAGGTGGGCCGCGCGAACAGGGCTCCAT
ACCCggacgtggccaaggccctggtccggaaggggaaggcgttAGCCAAG
CAAGGCGATTTGGCCAACGCAATAGAAGCCTACCGAGACGCGCAAATGGA
ACACTTCGACAAAACGGTGGAGCGGCTGATTAAGAGCACGGAGGTGGAGC
gcaagaagcaggaggagttGGCGTATGTGGATCCCGccaaggcagtggag
gcgaaggaccgGGGGAACGAGGCCTTCCGGGCGGGAAAATGGCCGGACGC
GGTGAAAGAATACAATGAAGCGATCAGACGGGACCCTTCGAACGCCGCTT
ATCACAACAATCTGGCGGCCGCATTGTCCAAACTCATGGATTTCTCGGCG
GCCAAGACGGCATGCGAGAAGGCGATCGCCCTCGACCCCAAGTACGTGAA
GGCCTGGGCCAAGAAGGGGGACATCGAGTTTTTCATGAAAGAATACCATC
GGGCCCTCGAGTCTTACAAGCATGGCCTGGAGATCGAACCCAACAACAGC
TTGTGTGTCCAAGGACTGCAAAAAACGAGTGCCCGTATCCGCGACGCCTC
ATCGCAGGAGGCTGACATGGAGCGTGCCGCGCACGGCATGGCCGACCCGG
AGGTACAGGCTATCTTAGGCGATCCTGTGATCCAGCAAGTACTCAGAGAT
CTTCAAGAAAATCcacgagagggaaggcaagcaTTGAGTGACCCTGGTGT
CGCGGCCAAAATCGAAAAACTCATCAATGCGGGGGTCTTGCGAACCAAGT
AAAGAAAATGCAAGTGAACGAGGACTTATCATGGCGGGCAACATTAGGTT
GGATATCTTTCTTCATAGGCAGTCTCGTATATTGCGCTAGGAAGGAAGTa
gaaaaagcgagggaggaaaggtatGGGGGAAGGATGTTGAGTTCATCACC
GTATGTATTTGACTCTCAGATAGAGCAAGGCTAGCAAAGCGAACATGTTG
GGTAATGTTTTCCCTAAATTATACAGCGGCCCTACGGGCAAGCATGCTTT
ATATTGCTTATAGAAAAAGGGAATGGGCGAGTCTCCACCTCTGCCTGTTT
CTTCGCTTTTCAAAATTGTGAAAATCAGTTTCCCGGCGATC

Coding sequence (CDS) from alignment at CM002463.1:490064..492604+

>rna4398 ID=rna4398|Name=rna4398|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at CM002463.1:490064..492604+ (Nannochloropsis gaditana)
ATGACAAGCGTAGAGGCAGAGACACACAAAGCGGCGGGGAACAAGGCACT
TCAAGCCAAGGACTACGATGAAGCTATCAAATGCTACACGCAAGCACTCG
AGGTGAGCGCAGCCCTACCCGTAacaggggaaggagctgcTCCCCGACAT
GTGTACTTCTCCAACCGATCGGCTGCCTATCTTTCCAAGGGAGATGCCGC
TGCCGCTTTGGAAGATGCTGAGCAATGCATCAAAGCGAACCCTACGTGGC
CCAAAGGATTTTCACGGAAAGGCGCTGCATTGCACACCATGAAGCGCTAC
GATGAAGCCCAAGCGGCTTATGAAGGAGGTCTTGAGGTGGCTCCCGACGA
CGCCGGGCTCGCATCTGCTCTAGAAGACGTTAAgaaggtgaaggagagca
gCAACAAGCCGCGCGTCAACCCCTTGGCATCGATCTTCGCGCCTGAGAAC
GTGGCGCGGTTGGCGGGGCACCCAGTTTTTTGCAAGTACTTGCTGGACTC
GGAGTTTATGGCCAAGATCAAGCTGATACAGACAGACCCGAATGCGTTCA
ATACGATCCTGCAGGACAAGCGAATCATGGACGTGTTTGGGTTCTTGACA
GGCATTGACATGCGGGCCGGGGATATGGACGAGCAGGAGAGTGAGGCCTC
CACCGTCAAGAAAGAggcggccccggcccccgcgcccgcccctgagcccg
cggaggaggatctgAGCGAAGCCGAGCGAGAAGAgcggaaaagaaagcac
gaggccctggaggcgaAAGAGCGAGGCAACCAGCATTacatgaagaagga
gttcgtggaggcgctggctgCCTATGAGGATGCCATCGTAAAAGACCCCT
CGAACATGGCCTTCCTGACCAACAAGGCTGCCGTCTTTTTTGAGCAGGGA
GACTTTACCAAAACAGTGGCACAGTGCGACGAAGCCATCCAGGTGGGCCG
CGCGAACAGGGCTCCATACCCggacgtggccaaggccctggtccggaagg
ggaaggcgttAGCCAAGCAAGGCGATTTGGCCAACGCAATAGAAGCCTAC
CGAGACGCGCAAATGGAACACTTCGACAAAACGGTGGAGCGGCTGATTAA
GAGCACGGAGGTGGAGCgcaagaagcaggaggagttGGCGTATGTGGATC
CCGccaaggcagtggaggcgaaggaccgGGGGAACGAGGCCTTCCGGGCG
GGAAAATGGCCGGACGCGGTGAAAGAATACAATGAAGCGATCAGACGGGA
CCCTTCGAACGCCGCTTATCACAACAATCTGGCGGCCGCATTGTCCAAAC
TCATGGATTTCTCGGCGGCCAAGACGGCATGCGAGAAGGCGATCGCCCTC
GACCCCAAGTACGTGAAGGCCTGGGCCAAGAAGGGGGACATCGAGTTTTT
CATGAAAGAATACCATCGGGCCCTCGAGTCTTACAAGCATGGCCTGGAGA
TCGAACCCAACAACAGCTTGTGTGTCCAAGGACTGCAAAAAACGAGTGCC
CGTATCCGCGACGCCTCATCGCAGGAGGCTGACATGGAGCGTGCCGCGCA
CGGCATGGCCGACCCGGAGGTACAGGCTATCTTAGGCGATCCTGTGATCC
AGCAAGTACTCAGAGATCTTCAAGAAAATCcacgagagggaaggcaagca
TTGAGTGACCCTGGTGTCGCGGCCAAAATCGAAAAACTCATCAATGCGGG
GGTCTTGCGAACCAAGTAA

Synonyms

Publications