rna4395, rna4395 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4395
Unique Name	rna4395
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1478
Alignment location	CM002463.1:482265..484339 -

Link to JBrowse

Properties


Property Name	Value
Product	indoleamine -dioxygenase subfamily
Orig transcript id	gnl\|cribi\|Naga_100073g15.10400.mrna
Orig protein id	gnl\|cribi\|Naga_100073g15.10400
Gene	IDO
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:482265..484339 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
IDO	gene4239	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26292.1	cds4385	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4395	rna4395-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:482265..484339-
coding sequence from alignment at CM002463.1:482265..484339-

mRNA sequence

>rna4395 ID=rna4395|Name=rna4395|organism=Nannochloropsis gaditana|type=mRNA|length=1478bp
GAGACAGGTTCTTGACACTTTGGCCTATAGGTTGCTTCTTCCCTCTATTC
CGAGCCAGTCTTCGCTGTCACGTCACCAGAGCGCGTCAGCGAAAACCGAT
CAAAAAGCCAAATGGTAGTCCCTAAGCTTTTGCCCTATGCCGTCCACGAG
CCCCCAACGGGCTTTGATTCCTTAACTGCCAAGGCGCATGGAATTATCCC
GCTGAGTGCTCAACGTGCTTTTAGAGACAGGCATGCGCACTGGTTTGATC
GAGCCGTCTCAGTGTCGGCGGTCGCTTTGGGCATAAGGCACCCGAAAGCA
CTTCTCCGATTTCTTTCCCTGCGTCGCACCGCTCAAACGTTCCACTACGG
TCACGAGTCTCCTGATCACTTTGTGGAGCTGCATCGGTGTGGAAAGCCGG
GAGCACCTCTCGTTGTCTTCATGCACGGCGGTGCATGGTTCAGCGGGCGG
CCCTGGATGTACCGTCTCATAAGCACCGCTCTGAACCGACGAGGCATGGA
TGTGGGCATCGTCGGTTACGGTACTTACAAGACGCTGCCACCCATCCCGG
GGACGAGACTACCAGATCCCGCCCTGGACGGCACGGCGGATCCCGCGGTC
GTGTTAGGACACGTGGACCATCAGGTGGACGACTTACAGCATTGCCTGGA
GTTTTTAATGCTTGATCCCCGCAGTCCCTACAGCGCGGACCAAGTACCCA
TCTTTCTCAGCGGCCATTCATCCGGAGCGCACATATGCAGCCTTTTCCTC
CTGCGCGAGACGCTGGGAGCACCCGGCTACAACACTCTTCCCCGCCGCGT
GCAAGGATTTGTGGGTTTAAGCGGCGTTTACGACGTGGCAGTACACCACG
AATACGAAGCTCGAAGAGGGGTCCACGAGATCAGTGGAATGGGCGCCTGC
AATGGCGGTCTCGCACGTTTTCACCGAAACTCGCCCACCACCTTGGCTGG
AATGCTGACACCAGAGCAGGCCGGAGCGCTTCCTCCTTTCTTGATTGTGC
ACGGTGTGGACGACGAAACGGTACCCTTCACGAACTCCCTCGTCTTCGCA
AGCAACCTAGCCGGGCACGGCGGGCGGGTGAAGACAGCCTGGCTACCGGA
GATGGACCATCAGGGCACCGTGGCAGCATTAATGATGCACACTGACAGTG
AGGTAGAACGTCATATCTCGGCATTCATGGAATCGGCGGAAAAAGTAGGG
ATTGGCAACACGCTGAAGTCCAAATTGTGAAAATTTCATAGGAGACCTAT
CACTGGTGAAGTTAATATGCAAATTATCATGGATTGGCCGCTTTCCAAGT
TTTAAACATGCATCGTCTCTTGAAAAATCGTTGAGAAGTATCGCAAAAAT
GTGCCAATGTGTAGACGGTAATGGATAATGATAAAAACAAAACAGCAAAG
CCTATGCGACAGAAGGGAATGGGGTTTTATTGTGATATCACAGTGAAAAA
CGAAATCAACCAGCGACGTTTGCACTCA

protein sequence of rna4395

>rna4395-protein ID=rna4395-protein|Name=rna4395|organism=Nannochloropsis gaditana|type=polypeptide|length=568bp
MPDSGCSCCIFEYLGAFGIDTLHGFLPSHEPLSRLPQEEFQSHENVAANL
AELLNSTIARAKIEVLPVVSAQDTRSLLNEDPPSQRRALLLLSGLASAYV
WGGGADVSPRNYLPPAIAVPLYEVSCMLETCPILSHQSNCLYNWKYSALE
KEARESSCRSQYPGESLCGDESNEWILHAGEDTDRLAPCPACYSTMSTTP
FLRTKELSLTFSFTEDENERMFYLLTLEIENIGARTLPLLEYTRRIAQKL
TSSSESGAQRDECQHEEGQGRACSHVIASDKAMVAALKEVKRLIQLCQQV
LLSMPRFVDPGFFYHRVRPYLSGWRNNPALPEGVMYRGVVPLKDRFLVGG
AGTETSGSQTHGKRGEETSGYGAWDDPFPDELAEAKNNAGDSSGPTLFLS
GASAAQSSLIPAIDVYLGVDHNAAGSPSQASYEYLKAMRAYMPKGHRRFL
DTLEKDLTSCEGTPIASIREYIQRYGSDRETMNGPEREDRKEVREAYNGC
VGALLAFRKSHLGIVHLYISSQQGQGEKGVGTAGLGGAAGGKGTGGQPPR
EFLMPLQQWTAASRLATH

mRNA from alignment at CM002463.1:482265..484339-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4395 ID=rna4395|Name=rna4395|organism=Nannochloropsis gaditana|type=mRNA|length=2075bp|location=Sequence derived from alignment at CM002463.1:482265..484339- (Nannochloropsis gaditana)
GGGGTATCCTCTCTCCAAATAGTAGGGCCTGACCGAGAGTGGCCCGTTTT
GATGCAAGACCTTCGCCCTGGCCTCCCACGTTTCGTCACTGCGAACTTGG
ATGCAAAGTGCAGCTCGTGAGGGAGACTATAGGTAAGAAAAACTGGGCTG
CGGGCGAAGACAGGGCTCCAAAATTCTCCCTCTGTGCTGGGAATTGCCAT
TTCCATTGACAGCGAGGTCCTCAAAAATGGGCTTCCGCAGCGTAAACCCA
CTGCACTGCCCTGATCATTTTAAATTTTTCAATATGTTTCTCGTACAAGG
TATGCCTGATTCCGGATGCAGTTGCTGTATTTTTGAATATCTCGGCGCCT
TCGGCATAGATACCCTCCATGGCTTCCTACCCTCCCATGAACCACTCTCA
CGCTTGCCCCAGGAAGAATTCCAGTCACATGAAAACGTGGCAGCAAATCT
GGCCGAACTATTAAATTCCACAATAGCACGAGCCAAAATCGAGGTTCTTC
CTGTTGTTTCAGCCCAAGACACGCGCTCGCTCTTAAATGAAGATCCCCCC
TCGCAACGACGGGCATTGCTGCTTCTTTCAGGCCTTGCATCGGCGTACGT
GTGGGGGGGCGGTGCAGATGTATCTCCGCGCAACTATCTTCCGCCTGCCA
TAGCTGTACCTCTTTACGAGGTGTCTTGCATGCTCGAAACATGTCCCATC
CTCAGCCATCAAAGTAATTGCTTGTACAATTGGAAATATTCGGCGCTGGA
AAAAGAAGCGCGAGAATCGAGCTGCCGCAGTCAATATCCTGGCGAATCTT
TGTGCGGCGATGAAAGCAATGAGTGGATTCTACATGCTGGTGAGGACACA
GATCGCTTGGCGCCTTGTCCTGCATGCTATTCAACGATGTCGACTACCCC
TTTCCTTCGCACGAAAGAGCTGTCCCTGACTTTCTCCTTCACAGAGGACG
AGAACGAGCGAATGTTCTACCTTCTCACCCTCGAAATCGAAAATATTGGC
GCCCGGACTCTGCCTTTGTTGGAGTACACGCGTCGCATTGCCCAGAAGCT
TACTTCCAGTTCTGAATCAGGAGCGCAGAGGGATGAGTGCCAACATGAAG
AAGGACAAGGGAGAGCTTGCTCTCACGTAATTGCTTCGGATAAAGCTATG
GTTGCCGCTTTAAAAGAAGTTAAAAGACTGATACAACTCTGCCAGCAGGT
CCTTCTCTCCATGCCTCGGTTCGTCGATCCTGGATTTTTTTACCACCGCG
TGCGGCCGTACCTCTCGGGATGGCGCAACAACCCTGCGCTGCCCGAGGGG
GTGATGTACAGAGGAGTGGTGCCGCTTAAGGATAGATTCTTGGTTGGAGG
AGCTGGGACCGAGACAAGCGGGAGCCAGACACATGGGAAACGTGGTGAGG
AAACAAGCGGATATGGAGCGTGGGACGACCCTTTTCCGGACGAGCTGGCA
GAAGCAAAGAACAATGCTGGGGATAGCAGCGGCCCGACCCTGTTCTTGTC
GGGGGCCTCCGCGGCACAAAGCTCCCTCATACCTGCCATTGACGTATACC
TCGGTGTTGACCACAATGCGGCAGGGTCCCCGAGTCAGGCGTCCTACGAG
TATCTGAAAGCGATGCGCGCTTACATGCCTAAAGGACATCGCCGATTCCT
GGACACGTTGGAAAAAGACCTCACCAGCTGCGAAGGGACCCCCATCGCGA
GCATCCGTGAGTACATTCAAAGATATGGAAGTGACCGAGAGACTATGAAC
GGGCCCGAACGCGAAGATAGGAAGGAGGTGCGGGAGGCGTACAATGGATG
CGTTGGGGCCTTGCTGGCTTTCCGCAAATCGCACTTAGGAATCGTGCATT
TGTACATCTCTTCTCAGCAAGGACAGGGAGAAAAAGGGGTGGGGACAGCT
GGGTTGGGGGGAGCGGCGGGTGGAAAAGGGACAGGTGGGCAGCCGCCCAG
AGAGTTTTTGATGCCATTGCAACAGTGGACAGCGGCATCGCGACTAGCAA
CTCATTGACTTGATTTTATTCATAAGCTGGACACGTGTCGAAAGAAAAAT
GAAGAAAAGTTTAGTAAAACTTATG

Coding sequence (CDS) from alignment at CM002463.1:482265..484339-

>rna4395 ID=rna4395|Name=rna4395|organism=Nannochloropsis gaditana|type=CDS|length=1707bp|location=Sequence derived from alignment at CM002463.1:482265..484339- (Nannochloropsis gaditana)
ATGCCTGATTCCGGATGCAGTTGCTGTATTTTTGAATATCTCGGCGCCTT
CGGCATAGATACCCTCCATGGCTTCCTACCCTCCCATGAACCACTCTCAC
GCTTGCCCCAGGAAGAATTCCAGTCACATGAAAACGTGGCAGCAAATCTG
GCCGAACTATTAAATTCCACAATAGCACGAGCCAAAATCGAGGTTCTTCC
TGTTGTTTCAGCCCAAGACACGCGCTCGCTCTTAAATGAAGATCCCCCCT
CGCAACGACGGGCATTGCTGCTTCTTTCAGGCCTTGCATCGGCGTACGTG
TGGGGGGGCGGTGCAGATGTATCTCCGCGCAACTATCTTCCGCCTGCCAT
AGCTGTACCTCTTTACGAGGTGTCTTGCATGCTCGAAACATGTCCCATCC
TCAGCCATCAAAGTAATTGCTTGTACAATTGGAAATATTCGGCGCTGGAA
AAAGAAGCGCGAGAATCGAGCTGCCGCAGTCAATATCCTGGCGAATCTTT
GTGCGGCGATGAAAGCAATGAGTGGATTCTACATGCTGGTGAGGACACAG
ATCGCTTGGCGCCTTGTCCTGCATGCTATTCAACGATGTCGACTACCCCT
TTCCTTCGCACGAAAGAGCTGTCCCTGACTTTCTCCTTCACAGAGGACGA
GAACGAGCGAATGTTCTACCTTCTCACCCTCGAAATCGAAAATATTGGCG
CCCGGACTCTGCCTTTGTTGGAGTACACGCGTCGCATTGCCCAGAAGCTT
ACTTCCAGTTCTGAATCAGGAGCGCAGAGGGATGAGTGCCAACATGAAGA
AGGACAAGGGAGAGCTTGCTCTCACGTAATTGCTTCGGATAAAGCTATGG
TTGCCGCTTTAAAAGAAGTTAAAAGACTGATACAACTCTGCCAGCAGGTC
CTTCTCTCCATGCCTCGGTTCGTCGATCCTGGATTTTTTTACCACCGCGT
GCGGCCGTACCTCTCGGGATGGCGCAACAACCCTGCGCTGCCCGAGGGGG
TGATGTACAGAGGAGTGGTGCCGCTTAAGGATAGATTCTTGGTTGGAGGA
GCTGGGACCGAGACAAGCGGGAGCCAGACACATGGGAAACGTGGTGAGGA
AACAAGCGGATATGGAGCGTGGGACGACCCTTTTCCGGACGAGCTGGCAG
AAGCAAAGAACAATGCTGGGGATAGCAGCGGCCCGACCCTGTTCTTGTCG
GGGGCCTCCGCGGCACAAAGCTCCCTCATACCTGCCATTGACGTATACCT
CGGTGTTGACCACAATGCGGCAGGGTCCCCGAGTCAGGCGTCCTACGAGT
ATCTGAAAGCGATGCGCGCTTACATGCCTAAAGGACATCGCCGATTCCTG
GACACGTTGGAAAAAGACCTCACCAGCTGCGAAGGGACCCCCATCGCGAG
CATCCGTGAGTACATTCAAAGATATGGAAGTGACCGAGAGACTATGAACG
GGCCCGAACGCGAAGATAGGAAGGAGGTGCGGGAGGCGTACAATGGATGC
GTTGGGGCCTTGCTGGCTTTCCGCAAATCGCACTTAGGAATCGTGCATTT
GTACATCTCTTCTCAGCAAGGACAGGGAGAAAAAGGGGTGGGGACAGCTG
GGTTGGGGGGAGCGGCGGGTGGAAAAGGGACAGGTGGGCAGCCGCCCAGA
GAGTTTTTGATGCCATTGCAACAGTGGACAGCGGCATCGCGACTAGCAAC
TCATTGA

Synonyms

Publications