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Properties
| Property Name | Value |
|---|
| Product | atp-binding cassette superfamily |
| Orig transcript id | gnl|cribi|Naga_100828g1.2398.mrna |
| Orig protein id | gnl|cribi|Naga_100828g1.2398 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:460023..462838 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4388 ID=rna4388|Name=rna4388|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
ATGTTGAACTTCATGTGTGGTCTCATCCTTGCTATGATAACCATGATAAT
GACATTTATTCCGACGACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACGGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAGCCGTGCTGGAGGAGGAGAATCGCGTGCGTCGCG
AGGCAACGATAGACACAATGAAAGCGGGAGGGGATGTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACAGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCCGACAATCCGGAAGT
GGTTCGCCGCCTGGTAGGGTACTGTCCTCAGTTCGACGCTCTTTTCGATC
TGCTGACTGGTCAGGAGCATTTGGAGCTGTACGCCCGTTAA back to topprotein sequence of rna4388 >rna4388-protein ID=rna4388-protein|Name=rna4388|organism=Nannochloropsis gaditana|type=polypeptide|length=859bp
MLAIYNTIKPQVLLEMLPNATRTIRFDHFHAINGNPQCTGYDSNIFWRCP
TRDCSPDACNKLVFAVAPSSNTDAAAAEAANALQLRVQDLTNSSVSTLLF
PSEADLDAYIAQPDYAVNTTLKNIGVAVVFDSGAPNWHYHLRVNRTVNEG
YTYNLPPTTLSTDSLLKNPNDWPKVCSRCSCQYLQSWYQSGALAVQNLVD
SFIISQAAGTPRKLTASVVNFPSPGYTEAGFWGQAQSFFPIFMLVTILYS
VSNVVRSLVTEKEARIREGMRMMALTDSALYASWVFHFATTFTIIAALIV
LVGGKLFQHSDKGLVFAFFLLFFFATMAFAFWMSTFFSKSKTAASLGIMP
YFAGYFLTMALKPASGRSVKLLASLHPAAAFALGISAFTEYEDAQQGVTL
FTFATSANGNFAFSDALGMLLVDVFVYAFLFWYFEKVWPNEFGTRLPPYF
LCMPSYWNSCLGIGRGEVRPLHEGISNSSGELKQESGPDVERVPDTLAQQ
IKEGKCICIRDMCKTFSTNTGPKHAVDHLNLTMYSGQITALLGHNGAGKS
TTIGILTGLTAPTSGVAIINGMDVSQDMQSIRHSLGVCPQHDVLFADLTV
EEHLTLFANFKGMPRSDVQAAVTSMIAEVGLTEKRKVASKNLSGGMKRKL
SLGIAFIGGSKVVILDEPTSGIDAYSRRFVWNVIRKYKEGRTIILTTHFL
EEADLLGDRIAIMAKGKLRACGSSLFLKNNFGVGYNLTIEKKAAADATRI
QRYVQNKVQDAKVLSCVGAEISFQLPRNSAEDFKALFEGLDNHQEALGLE
HYGVSVTTLEEVFIRVTRGDEIDVEAKAAISVRRNSLEERRRSLEETRYT
SLCRTLDAR back to topmRNA from alignment at CM002463.1:460023..462838+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4388 ID=rna4388|Name=rna4388|organism=Nannochloropsis gaditana|type=mRNA|length=2816bp|location=Sequence derived from alignment at CM002463.1:460023..462838+ (Nannochloropsis gaditana)
ATGCTGGCGATCTATAACACCATCAAGCCTCAAGTGCTGTTGGAGATGCT
ACCCAACGCTACTCGTACAATACGTTTTGATCATTTCCACGCAATTAACG
GTAACCCACAATGTACTGGCTATGATTCCAACATCTTCTGGCGGTGCCCT
ACCCGAGATTGCAGTCCTGATGCCTGCAACAAGTTGGTGTTTGCGGTAGC
TCCGTCCTCCAACACtgatgcagcagcagccgaaGCTGCCAATGCCCTGC
AGCTCCGTGTGCAAGACTTGACAAACTCCAGCGTGTCGACACTACTTTTC
CCTTCGGAGGCAGACTTGGATGCATACATTGCTCAACCGGACTACGCTGT
CAACACGACCCTAAAAAATATCGGCGTGGCAGTTGTCTTCGATTCAGGTG
CCCCCAACTGGCACTACCATTTGCGCGTGAACCGGACCGTGAATGAAGGG
TACACCTACAATCTTCCGCCGACCACGCTGAGCACAGATAGCCTCTTAAA
GAACCCGAATGACTGGCCTAAGGTATGCTCGCGATGCTCGTGCCAATATT
TACAATCTTGGTACCAATCAGGGGCGCTAGCAGTGCAAAATCTGGTAGAT
TCATTCATCATCTCGCAAGCCGCCGGCACACCACGGAAGCTAACAGCCTC
CGTGGTCAACTTTCCATCCCCTGGCTACACCGAAGCAGGATTTTGGGGGC
AGGCGCAGTCCTTCTTCCCAATTTTTATGCTCGTTACAATTCTTTATTCA
GTCTCCAATGTGGTGCGGAGTTTGGTAACTGAGAAAGAGGCTCGCATTCG
GGAGGGTATGCGAATGATGGCCTTGACGGACTCGGCACTGTATGCGAGCT
GGGTGTTCCATTTTGCTACGACCTTTACCATCATCGCGGCCCTGATCGTG
CTGGTGGGGGGCAAACTTTTTCAGCATTCGGACAAGGGATTGGTGTTTGC
GTTCTttctgctcttcttctttgcaACGATGGCGTTCGCGTTTTGGATGT
CGACATTTTTCAGCAAGAGCAAGACGGCGGCGAGCTTGGGCATCATGCCT
TACTTCGCTGGTTATTTTCTGACGATGGCCTTGAAGCCTGCCTCGGGCCG
TAGCGTGAAGCTACTGGCGTCCTTGCACCCTGCAGCGGCGTTTGCACTGG
GTATTAGTGCTTTCACTGAGTACGAGGACGCACAGCAAGGCGTGACGCTG
TTCACATTTGCAACCTCCGCGAACGGGAACTTTGCTTTCTCGGATGCGTT
AGGCATGCTACTGGTGGACGTCTTTGTGTACGCTTTTCTGTTTTGGTATT
TTGAGAAGGTTTGGCCGAACGAGTTTGGAACGCGTTTGCCACCGTATTTT
TTGTGTATGCCATCATACTGGAACTCTTGCCTTGGTATTGGTAGAGGCGA
GGTAAGGCCCTTACACGAGGGAATAAGCAACTCTTCCGGAGAGCTAAAGC
AAGAATCGGGGCCCGACGTGGAGCGTGTGCCCGACACCTTGGCGCAGCAA
ATCAAAGAAGGGAAGTGCATCTGTATACGGGACATGTGCAAGACGTTCTC
GACCAACACGGGGCCCAAGCATGCGGTGGACCACCTGAACCTGACCATGT
ACTCCGGGCAGATCACGGCTTTGTTGGGTCACAATGGCGCAGGCAAGTCA
ACAACGATCGGTATTTTGACGGGGCTGACGGCTCCGACATCAGGCGTGGC
GATCATCAACGGCATGGACGTGTCGCAAGACATGCAAAGCATCCGGCACA
GCTTAGGAGTGTGTCCGCAGCACGACGTGTTGTTTGCGGAcctgacggtg
gaggagcatCTGACGCTTTTTGCGAATTTCAAGGGCATGCCACGATCGGA
TGTTCAAGCTGCAGTGACTAGCATGATTGCGGAGGTCGGCTTGACAGAGA
AGCGCAAGGTAGCGAGCAAGAACTTATCGGGAGGCATGAAGCGAAAGTTG
AGTCTCGGCATAGCTTTTATAGGAGGCAGCAAAGTGGTGATCTTGGACGA
GCCCACGTCAGGCATCGATGCGTATTCTCGGCGCTTTGTCTGGAATGTAA
TTCGCAAGTATAAGGAAGGCCGCACAATCATTTTGACGACGCATTTCTTG
GAAGAGGCTGACCTGCTTGGCGATCGTATCGCGATCATGGCGAAAGGCAA
GTTGCGTGCATGTGgttcttctctctttctgAAGAACAACTTCGGAGTGG
GCTACAATCTGACTATCGAGAAGAAAGCTGCGGCAGATGCGACGCGCATT
CAACGGTACGTGCAAAACAAGGTGCAAGACGCGAAGGTGTTGAGCTGTGT
AGGTGCAGAGATCTCTTTTCAGTTGCCTCGAAACAGTGCGGAAGACTTCA
AGGCGCTGTTTGAAGGCTTGGACAATCATCAGGAGGCTTTAGGTTTGGAG
CACTATGGTGTCTCAGTAAcgacgctggaggaggtgttcATCCGTGTGAC
GCGAGGGGATGAGATCGACGTGGAAGCCAAGGCTGCAATCTCCGTGCGCC
GCAACAGTTTGGAAGAACGTCGGAGAAGCTTGGAAGAAACGCGATACACA
AGCTTGTGCCGTACCCTTGACGGTACCATGCCACCCCAGAAAACTTCCGC
ACCATTGGAGATTGTTACTCACTTTTCTGGAGAAGCCTTGCGCTCAAAGA
CAGCCGGCGTCTCCGACGCTAAAGTCCGCTCTGCCATGAAGGTCCATCGC
GGCTTGATGCCATGTGCTGAAGATCAGGAAATCGACTTCAACGATTACTG
GCGTTTTTTCCGGCGACACATGTACGCACTTCTTGTCAAACGCATGCTGT
ACCTTAAGCGCGATAA back to topCoding sequence (CDS) from alignment at CM002463.1:460023..462838+ >rna4388 ID=rna4388|Name=rna4388|organism=Nannochloropsis gaditana|type=CDS|length=5160bp|location=Sequence derived from alignment at CM002463.1:460023..462838+ (Nannochloropsis gaditana)
ATGCTGGCGATCTATAACACCATCAAGCCTCAAGTGCTGTTGGAGATGCT
ACCCAACGCTACTCGTACAATACGTTTTGATCATTTCCACGCAATTAACG
GTAACCCACAATGTACTGGCTATGATTCCAACATCTTCTGGCGGTGCCCT
ACCCGAGATTGCAGTCCTGATGCCTGCAACAAGTTGGTGTTTGCGGTAGC
TCCGTCCTCCAACACtgatgcagcagcagccgaaGCTGCCAATGCCCTGC
AGCTCCGTGTGCAAGACTTGACAAACTCCAGCGTGTCGACACTACTTTTC
CCTTCGGAGGCAGACTTGGATGCATACATTGCTCAACCGGACTACGCTGT
CAACACGACCCTAAAAAATATCGGCGTGGCAGTTGTCTTCGATTCAGGTG
CCCCCAACTGGCACTACCATTTGCGCGTGAACCGGACCGTGAATGAAGGG
TACACCTACAATCTTCCGCCGACCACGCTGAGCACAGATAGCCTCTTAAA
GAACCCGAATGACTGGCCTAAGGTATGCTCGCGATGCTCGTGCCAATATT
TACAATCTTGGTACCAATCAGGGGCGCTAGCAGTGCAAAATCTGGTAGAT
TCATTCATCATCTCGCAAGCCGCCGGCACACCACGGAAGCTAACAGCCTC
CGTGGTCAACTTTCCATCCCCTGGCTACACCGAAGCAGGATTTTGGGGGC
AGGCGCAGTCCTTCTTCCCAATTTTTATGCTCGTTACAATTCTTTATTCA
GTCTCCAATGTGGTGCGGAGTTTGGTAACTGAGAAAGAGGCTCGCATTCG
GGAGGGTATGCGAATGATGGCCTTGACGGACTCGGCACTGTATGCGAGCT
GGGTGTTCCATTTTGCTACGACCTTTACCATCATCGCGGCCCTGATCGTG
CTGGTGGGGGGCAAACTTTTTCAGCATTCGGACAAGGGATTGGTGTTTGC
GTTCTttctgctcttcttctttgcaACGATGGCGTTCGCGTTTTGGATGT
CGACATTTTTCAGCAAGAGCAAGACGGCGGCGAGCTTGGGCATCATGCCT
TACTTCGCTGGTTATTTTCTGACGATGGCCTTGAAGCCTGCCTCGGGCCG
TAGCGTGAAGCTACTGGCGTCCTTGCACCCTGCAGCGGCGTTTGCACTGG
GTATTAGTGCTTTCACTGAGTACGAGGACGCACAGCAAGGCGTGACGCTG
TTCACATTTGCAACCTCCGCGAACGGGAACTTTGCTTTCTCGGATGCGTT
AGGCATGCTACTGGTGGACGTCTTTGTGTACGCTTTTCTGTTTTGGTATT
TTGAGAAGGTTTGGCCGAACGAGTTTGGAACGCGTTTGCCACCGTATTTT
TTGTGTATGCCATCATACTGGAACTCTTGCCTTGGTATTGGTAGAGGCGA
GGTAAGGCCCTTACACGAGGGAATAAGCAACTCTTCCGGAGAGCTAAAGC
AAGAATCGGGGCCCGACGTGGAGCGTGTGCCCGACACCTTGGCGCAGCAA
ATCAAAGAAGGGAAGTGCATCTGTATACGGGACATGTGCAAGACGTTCTC
GACCAACACGGGGCCCAAGCATGCGGTGGACCACCTGAACCTGACCATGT
ACTCCGGGCAGATCACGGCTTTGTTGGGTCACAATGGCGCAGGCAAGTCA
ACAACGATCGGTATTTTGACGGGGCTGACGGCTCCGACATCAGGCGTGGC
GATCATCAACGGCATGGACGTGTCGCAAGACATGCAAAGCATCCGGCACA
GCTTAGGAGTGTGTCCGCAGCACGACGTGTTGTTTGCGGAcctgacggtg
gaggagcatCTGACGCTTTTTGCGAATTTCAAGGGCATGCCACGATCGGA
TGTTCAAGCTGCAGTGACTAGCATGATTGCGGAGGTCGGCTTGACAGAGA
AGCGCAAGGTAGCGAGCAAGAACTTATCGGGAGGCATGAAGCGAAAGTTG
AGTCTCGGCATAGCTTTTATAGGAGGCAGCAAAGTGGTGATCTTGGACGA
GCCCACGTCAGGCATCGATGCGTATTCTCGGCGCTTTGTCTGGAATGTAA
TTCGCAAGTATAAGGAAGGCCGCACAATCATTTTGACGACGCATTTCTTG
GAAGAGGCTGACCTGCTTGGCGATCGTATCGCGATCATGGCGAAAGGCAA
GTTGCGTGCATGTGgttcttctctctttctgAAGAACAACTTCGGAGTGG
GCTACAATCTGACTATCGAGAAGAAAGCTGCGGCAGATGCGACGCGCATT
CAACGGTACGTGCAAAACAAGGTGCAAGACGCGAAGGTGTTGAGCTGTGT
AGGTGCAGAGATCTCTTTTCAGTTGCCTCGAAACAGTGCGGAAGACTTCA
AGGCGCTGTTTGAAGGCTTGGACAATCATCAGGAGGCTTTAGGTTTGGAG
CACTATGGTGTCTCAGTAAcgacgctggaggaggtgttcATCCGTGTGAC
GCGAGGGGATGAGATCGACGTGGAAGCCAAGGCTGCAATCTCCGTGCGCC
GCAACAGTTTGGAAGAACGTCGGAGAAGCTTGGAAGAAACGCGATACACA
AGCTTGTGCCGTACCCTTGACGCGCGATAAATGCTGGCGATCTATAACAC
CATCAAGCCTCAAGTGCTGTTGGAGATGCTACCCAACGCTACTCGTACAA
TACGTTTTGATCATTTCCACGCAATTAACGGTAACCCACAATGTACTGGC
TATGATTCCAACATCTTCTGGCGGTGCCCTACCCGAGATTGCAGTCCTGA
TGCCTGCAACAAGTTGGTGTTTGCGGTAGCTCCGTCCTCCAACACtgatg
cagcagcagccgaaGCTGCCAATGCCCTGCAGCTCCGTGTGCAAGACTTG
ACAAACTCCAGCGTGTCGACACTACTTTTCCCTTCGGAGGCAGACTTGGA
TGCATACATTGCTCAACCGGACTACGCTGTCAACACGACCCTAAAAAATA
TCGGCGTGGCAGTTGTCTTCGATTCAGGTGCCCCCAACTGGCACTACCAT
TTGCGCGTGAACCGGACCGTGAATGAAGGGTACACCTACAATCTTCCGCC
GACCACGCTGAGCACAGATAGCCTCTTAAAGAACCCGAATGACTGGCCTA
AGGTATGCTCGCGATGCTCGTGCCAATATTTACAATCTTGGTACCAATCA
GGGGCGCTAGCAGTGCAAAATCTGGTAGATTCATTCATCATCTCGCAAGC
CGCCGGCACACCACGGAAGCTAACAGCCTCCGTGGTCAACTTTCCATCCC
CTGGCTACACCGAAGCAGGATTTTGGGGGCAGGCGCAGTCCTTCTTCCCA
ATTTTTATGCTCGTTACAATTCTTTATTCAGTCTCCAATGTGGTGCGGAG
TTTGGTAACTGAGAAAGAGGCTCGCATTCGGGAGGGTATGCGAATGATGG
CCTTGACGGACTCGGCACTGTATGCGAGCTGGGTGTTCCATTTTGCTACG
ACCTTTACCATCATCGCGGCCCTGATCGTGCTGGTGGGGGGCAAACTTTT
TCAGCATTCGGACAAGGGATTGGTGTTTGCGTTCTttctgctcttcttct
ttgcaACGATGGCGTTCGCGTTTTGGATGTCGACATTTTTCAGCAAGAGC
AAGACGGCGGCGAGCTTGGGCATCATGCCTTACTTCGCTGGTTATTTTCT
GACGATGGCCTTGAAGCCTGCCTCGGGCCGTAGCGTGAAGCTACTGGCGT
CCTTGCACCCTGCAGCGGCGTTTGCACTGGGTATTAGTGCTTTCACTGAG
TACGAGGACGCACAGCAAGGCGTGACGCTGTTCACATTTGCAACCTCCGC
GAACGGGAACTTTGCTTTCTCGGATGCGTTAGGCATGCTACTGGTGGACG
TCTTTGTGTACGCTTTTCTGTTTTGGTATTTTGAGAAGGTTTGGCCGAAC
GAGTTTGGAACGCGTTTGCCACCGTATTTTTTGTGTATGCCATCATACTG
GAACTCTTGCCTTGGTATTGGTAGAGGCGAGGTAAGGCCCTTACACGAGG
GAATAAGCAACTCTTCCGGAGAGCTAAAGCAAGAATCGGGGCCCGACGTG
GAGCGTGTGCCCGACACCTTGGCGCAGCAAATCAAAGAAGGGAAGTGCAT
CTGTATACGGGACATGTGCAAGACGTTCTCGACCAACACGGGGCCCAAGC
ATGCGGTGGACCACCTGAACCTGACCATGTACTCCGGGCAGATCACGGCT
TTGTTGGGTCACAATGGCGCAGGCAAGTCAACAACGATCGGTATTTTGAC
GGGGCTGACGGCTCCGACATCAGGCGTGGCGATCATCAACGGCATGGACG
TGTCGCAAGACATGCAAAGCATCCGGCACAGCTTAGGAGTGTGTCCGCAG
CACGACGTGTTGTTTGCGGAcctgacggtggaggagcatCTGACGCTTTT
TGCGAATTTCAAGGGCATGCCACGATCGGATGTTCAAGCTGCAGTGACTA
GCATGATTGCGGAGGTCGGCTTGACAGAGAAGCGCAAGGTAGCGAGCAAG
AACTTATCGGGAGGCATGAAGCGAAAGTTGAGTCTCGGCATAGCTTTTAT
AGGAGGCAGCAAAGTGGTGATCTTGGACGAGCCCACGTCAGGCATCGATG
CGTATTCTCGGCGCTTTGTCTGGAATGTAATTCGCAAGTATAAGGAAGGC
CGCACAATCATTTTGACGACGCATTTCTTGGAAGAGGCTGACCTGCTTGG
CGATCGTATCGCGATCATGGCGAAAGGCAAGTTGCGTGCATGTGgttctt
ctctctttctgAAGAACAACTTCGGAGTGGGCTACAATCTGACTATCGAG
AAGAAAGCTGCGGCAGATGCGACGCGCATTCAACGGTACGTGCAAAACAA
GGTGCAAGACGCGAAGGTGTTGAGCTGTGTAGGTGCAGAGATCTCTTTTC
AGTTGCCTCGAAACAGTGCGGAAGACTTCAAGGCGCTGTTTGAAGGCTTG
GACAATCATCAGGAGGCTTTAGGTTTGGAGCACTATGGTGTCTCAGTAAc
gacgctggaggaggtgttcATCCGTGTGACGCGAGGGGATGAGATCGACG
TGGAAGCCAAGGCTGCAATCTCCGTGCGCCGCAACAGTTTGGAAGAACGT
CGGAGAAGCTTGGAAGAAACGCGATACACAAGCTTGTGCCGTACCCTTGA
CGCGCGATAA back to top
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