rna4384, rna4384 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4384
Unique Name	rna4384
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2559
Alignment location	CM002463.1:440824..442719 +

Link to JBrowse

Properties


Property Name	Value
Product	vacuolar sorting protein 9 domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100093g3.5108.mrna
Orig protein id	gnl\|cribi\|Naga_100093g3.5108
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:440824..442719 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100093g3	gene4228	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4384	rna4384-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26311.1	cds4374	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:440824..442719+
coding sequence from alignment at CM002463.1:440824..442719+

mRNA sequence

>rna4384 ID=rna4384|Name=rna4384|organism=Nannochloropsis gaditana|type=mRNA|length=2559bp
ATGTGTGCTTTCCTGGTGAGGATAAAGATGCCGTTTCTCGCAAGATCTGT
TGTTCTACGACTAACACATTCCGTACACTTCCTCTTCCCCCGCAGATACG
ACCACTTAAATAATATGCCGAGATTCAAGCTGTCGAGCATTTTCTCCCCC
TCCAGAAAGAAATCGAGCACCAACGAGTGGAATGGCAGAAATATGACTCA
GGAGGACTTCATGCGGAAAGATGAATGCCTGGTTGTCGACGATCGAGATC
TTCTGCTTCGCACGGAGAACAAGTATAAGTGTCATCGCTTCACACCGGAA
CAACCTCGAGGCCTACTTCACCGCGCGTTCTCCGTCTTCCTCTTTGACAA
GACTGGGCGGCTCTTGCTCCAACAACGCGCAGCATCGAAGATCACCTTCC
CCCAAGTCTGGACCAACACATGCTGCTCGCACCCTCTCAGCGGCTTCACT
CCCACAGAGGTGGACACGCCGGAAGACTTGGCCAATGGGAAGGTCAAGGG
CGTGAAACGCGCCGCCATCCGCAAGCTCCAGCACGAGCTGGGGATTCCCT
CATTCCAAGTGCCCTTGAGAAAATTTAAGTTTCTGACCCGCCTGCATTAC
TGGGCGGCAGACGCTGCCACCTATGGCCCCGCCGCGGAGTGGGGCGAGCA
CGAGATCGACTACGTCCTTTTCATCCAAGTCCCCACCGTCACCCTTCGAC
CAAACCCCGAAGAGGTCAACGCCGTCAAGTTCGTGAGTCTCCCCGAGCTC
CAGGAAATGATGCATCCCTCCTCAGGACTCCGGTGGTCTCCGTGGTTCCG
CATCATCGCCGAGCGCTTCCTCCCCCTCTGGTGGGCCGACCTGAAGCTAA
CGCTCCGCACCAACACGTACTTCGACCCCACGACCATCCACCGCTTTGAG
CCTCCCACTGATCCCACGGGGAATATCAGCCCCTCTGAATTTGCCCAAGA
CACAGCCGCCTCGGCTCCGTCTGGCGGGCTTGTCCCGATGGGACGGGCAT
CGGCCTCTCCCACCCTCCCTCCCGCCTTTGGCAAGGGAGACGAGGGCAAG
AAACAAGGCGCCTACGGGAAGATCAAATCACACTCGGAGAGCCTGGTCTC
ACAACTCCTCCGTGTCGACGAGGTCGGGGCAGCCCTGCGGCTAAAGTTCG
CCCGCCCTTTCCCCGAAACCGATGTTGGGCACGCCGGTGACGCGGATGTG
CGATTTTGTGCGGACATGCTGGGGCGGGTCTCGCGCTCGTTCGCGGCCGT
CATTCGCCAGTTGCCGAAAGGCCTGTGCCTGGAGACGGTGGTTTTCTACC
TGGTGTTGCGGGCGTTGGACACGGTGGAGGACGACATGGAGGCCTTCCAA
AAGGACCCTGGCGCCAAGCTCCGGCATTTGCGTGGCTTCTACCATGTCGC
GCTGGAAGACCCCGAGTTCAAGATGCACGGGGTCGGGAAAGGGGACGAGG
CGCGGCTGCTGGAGAATTTCGACAGGGTGGTCCGCGTCTTCCAGGGGCTG
ACGCCCGGTATGCGCACGGTAATCAAAGACATCACCCGGAGGATGGGGGC
GGGCATGGCGGACTTTGTCGACAAGGACCTGGGCCAAGGCACTATCTCGT
TGCAGGAGTACGACTTGTACTGCCACTACGTGGCAGGCCTGGTAGGGGAG
GGCTTGACGCGCATGTTCGCTGAGAGTGGCTTGGAGGCCCCCGACCTGGC
GACGAGCCGGCAGGAGCTCGCCAACAGCATGGGCCTCTTTCTGCAAAAGA
CGAACATCATCCGCGACTACCTGGAGGATTTTGTGGACGGGCGGGCCTTT
TGGCCTCAGGAGGTGTGGAAACGCCACGCCCCCTCCGCCGTCCCCGCCCA
GTCCTTGGGCGCTTTTGCGGAAGCCGAGCACCGGGAGCGGGCGTTGGCCT
GCCTGGATGAACTCGTTACCAATGCCTTGGAGCATGTCCCGGACTGTCTC
GCCTACATGTCGCGACTCCACACCCCTCAAATCTTCCGCTTCTGCGCCAT
TCCCCAAGTCATGGCCATCGCCACCCTGGAGAAAGTGTACCACAACCCCG
ACGTCTTTACGGGCGTGGTAAAGATCCGGAAGGGCTTGGCTTGCAAGCTG
ATAATGGAGGCGAACAGCATGGGGGACCTGTACACCTGTTTCTCCTCCTT
CGCCGGGAAGATCGCAAGGCGGGCGGCAGCACTAGAGAAAAGGGGCGACT
CCGTCAGTGCCCAAACATTGCGGGTGTGTGAAGAGATTCGTGTTCTGTGC
AAGGAAGGAGAGGCGAGTTCCACCAACACCAAAAAGTACGCCAGGGCCCT
GCATGCGGCGTTCGCGGCGTTGCTCCTGGCCATAGCTCTCGTCCCCGTGC
TTGCCTTGTGGGGCACGGAGAGTTCAAGGGGAGGTTTCTTTGCCCGCCCC
ATTGAGAGCCCGGCGGGCTTGAGCGGGGCGGACTACGTGCAGATGGCTTT
CAACGTCCTCGTCTCCGTTGTGGCCACGCTCGCACTGAGCTACGTGGTTT
CGAAGGTCTGGCGACCGCTAGGCGGGCAGGGCAACAGATCTCGGTCTTTG
GCGGCGTGA

protein sequence of rna4384

>rna4384-protein ID=rna4384-protein|Name=rna4384|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MSTGSIDESRRHDLLLEARRQRSSWLQNEDYVEMDIVEALLAKQQKEQQQ
HGKEQGSLAGLFQKVPGLANVLPAAREYVGFLNEVAGEDDQDAVAYDPKV
LQALSAVQDSETRSLEEAEAEPATPLPDESLDPSTPLSYDGFIRLLMHPG
SAEIVKSMQRFVSAFIQSQERRRGLPARAPPSPSSPRPQGEHLHAFIDSL
RGELCNNKVWSGRLTAGGGSRASGSWSAAWEEVREHLEKFLVIKLHRYLF
TEAETQVLVKEEARWRARVQSLAFLGPEHLEVRSLLSSSSVSAALAPAIL
EFSRVPAHKAPADIMAGLLRCSQALTQALVSSRVAGTGLPGADEFLPAMI
LTVKESNPENLRWAIHAVQRYRHPSRLQVAEPAYVFTNVLSAIHFLETAD
ASQLNMTPESFATSVAACKAASRSLSRTQERGFMAEIGDGEDRPLVDLPG
PASAPLSGALSSPLQNLSTARGPVAPPSTFAMATGRAGPLSSPLSGSLGK
KASPWPFRSIQNVQRERELGTRGAPTLAAMTPPAPLQVAACRLQELVKDL
QEHASRRLEKDRSQGSRSQEIQQQTPLPPSLSSQRLLKSCSFLHASSLDL
RLSDISALLAEYRCLVAVADQCLELLQHNCK

mRNA from alignment at CM002463.1:440824..442719+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4384 ID=rna4384|Name=rna4384|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp|location=Sequence derived from alignment at CM002463.1:440824..442719+ (Nannochloropsis gaditana)
ATGAGCACCGGTTCCATCGACGAGTCCAGGCGCCATGACCTACTTCTCGA
AGCTAGGCGGCAGCGCTCATCGTGGCTCCAGAATGAAGACTATGTAGAGA
TGGACATTGTGGAGGCGCTTTTAGCCAAGCAGCAGAAagaacagcagcaa
catGGAAAAGAACAGGGTTCGCTTGCCGGCCTCTTTCAGAAAGTGCCAGG
TCTTGCGAACGTGTTGCCCGCCGCGCGGGAATACGTGGGGTTTTTGAACG
AAGTGGCAGGTGAAGACGACCAAGACGCGGTGGCATACGATCCTAAAGTT
CTTCAGGCATTGTCTGCTGTCCAGGACTCGGAGACACGGTCGCTAGAGGA
AGCTGAGGCCGAGCCCGCTACACCCCTCCCAGATGAGTCTCTggacccct
ccacccccttaTCGTACGATGGATTCATAAGACTCTTGATGCACCCGGGT
TCGGCAGAGATCGTGAAGTCGATGCAGCGCTTCGTGTCTGCTTTCATCCA
GAGCCAAGAACGACGGAGGGGATTGCCAGCCCGAGCGCCTCCTTCACCGT
CTTCGCCGCGGCCTCAGGGCGAGCATTTGCACGCGTTTATCGACAGTTTG
CGTGGGGAACTTTGCAATAATAAGGTCTGGTCGGGCAGGCTGACTGCCGG
AGGTGGCTCTCGGGCGTCAGGTTCGTGGTccgcggcgtgggaggaggtgc
gagAACACTTGGAGAAGTTCCTTGTGATTAAACTGCACCGCTACCTGTTC
ACCGAGGCGGAGACCCAGGTActggtcaaggaggaggcacgtTGGCGGGC
GCGCGTGCAATCCCTGGCATTCCTTGGCCCTGAACATTTGGAAGTccgct
ccttgctctcctcgtcctccgtctctgccGCCCTAGCGCCTGCGATTTTG
GAGTTTTCCCGCGTTCCTGCCCACAAGGCGCCCGCGGACATTATGGCAGG
TCTTCTCCGCTGCTCTCAAGCCCTCACACAGGCCCTGGTTAGCAGTCGCG
TGGCCGGTACCGGTCTACCAGGGGCGGACGAGTTCCTCCCAGCCATGATC
CTCACCGTGAAGGAGAGCAATCCGGAAAATCTGCGATGGGCCATCCACGC
TGTCCAACGGTATCGACACCCATCGCGCCTGCAGGTGGCCGAGCCCGCGT
ACGTGTTCACGAACGTGCTCTCCGCCATCCATTTTCTGGAAACCGCGGAC
GCCTCCCAGTTGAACATGACGCCAGAGAGCTTTGCCACCTCCGTGGCCGC
CTGCAAAGCCGCGTCGAGGAGCTTGAGTCGGACGCAGGAAAGGGGCTTCA
TGGCGGAGAtaggagatggggaggaccGACCACTTGTCGATCTTCCTGGG
CCCGCGTCAGCTCCGCTATCCggtgctctctcctccccactgCAGAACCT
CTCCACTGCCAGGGGCCCCGTGGCGCCGCCCTCGACCTTCGCCATGGCAA
CGGGACGCGCCGgtcccctgtcctcccctttgtccGGATCTCTGGGCAAA
AAGGCTTCCCCTTGGCCCTTCCGGTCCATTCAAAACGTACAGCGCGAGCG
GGAGCTAGGGACTCGGGGAGCTCCCACACTGGCCGCAATGACACCTCCCG
CACCCCTTCAGGTCGCTGCGTGCCGTTTGCAAGAATTGGTAAAGGATCTG
CAGGAACATGCGAGCAGGAGGCTAGAAAAGGACCGCAGCCAAGGAAGCAG
GAGCCAAGAGATACAGCAGCAGacaccccttccaccttcgcTATCCTCTC
AAAGACTGTTGAAGTCGTGTTCTTTTTTACATGCATCTTCCTTGGACCTG
CGATTGAGTGATATATCAGCTCTTCTAGCAGAGTATAGGTGCCTTGTGGC
TGTGGCTGATCAGTGTTTGGAGCTGCTGCAACACAACTGCAAATAA

Coding sequence (CDS) from alignment at CM002463.1:440824..442719+

>rna4384 ID=rna4384|Name=rna4384|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002463.1:440824..442719+ (Nannochloropsis gaditana)
ATGAGCACCGGTTCCATCGACGAGTCCAGGCGCCATGACCTACTTCTCGA
AGCTAGGCGGCAGCGCTCATCGTGGCTCCAGAATGAAGACTATGTAGAGA
TGGACATTGTGGAGGCGCTTTTAGCCAAGCAGCAGAAagaacagcagcaa
catGGAAAAGAACAGGGTTCGCTTGCCGGCCTCTTTCAGAAAGTGCCAGG
TCTTGCGAACGTGTTGCCCGCCGCGCGGGAATACGTGGGGTTTTTGAACG
AAGTGGCAGGTGAAGACGACCAAGACGCGGTGGCATACGATCCTAAAGTT
CTTCAGGCATTGTCTGCTGTCCAGGACTCGGAGACACGGTCGCTAGAGGA
AGCTGAGGCCGAGCCCGCTACACCCCTCCCAGATGAGTCTCTggacccct
ccacccccttaTCGTACGATGGATTCATAAGACTCTTGATGCACCCGGGT
TCGGCAGAGATCGTGAAGTCGATGCAGCGCTTCGTGTCTGCTTTCATCCA
GAGCCAAGAACGACGGAGGGGATTGCCAGCCCGAGCGCCTCCTTCACCGT
CTTCGCCGCGGCCTCAGGGCGAGCATTTGCACGCGTTTATCGACAGTTTG
CGTGGGGAACTTTGCAATAATAAGGTCTGGTCGGGCAGGCTGACTGCCGG
AGGTGGCTCTCGGGCGTCAGGTTCGTGGTccgcggcgtgggaggaggtgc
gagAACACTTGGAGAAGTTCCTTGTGATTAAACTGCACCGCTACCTGTTC
ACCGAGGCGGAGACCCAGGTActggtcaaggaggaggcacgtTGGCGGGC
GCGCGTGCAATCCCTGGCATTCCTTGGCCCTGAACATTTGGAAGTccgct
ccttgctctcctcgtcctccgtctctgccGCCCTAGCGCCTGCGATTTTG
GAGTTTTCCCGCGTTCCTGCCCACAAGGCGCCCGCGGACATTATGGCAGG
TCTTCTCCGCTGCTCTCAAGCCCTCACACAGGCCCTGGTTAGCAGTCGCG
TGGCCGGTACCGGTCTACCAGGGGCGGACGAGTTCCTCCCAGCCATGATC
CTCACCGTGAAGGAGAGCAATCCGGAAAATCTGCGATGGGCCATCCACGC
TGTCCAACGGTATCGACACCCATCGCGCCTGCAGGTGGCCGAGCCCGCGT
ACGTGTTCACGAACGTGCTCTCCGCCATCCATTTTCTGGAAACCGCGGAC
GCCTCCCAGTTGAACATGACGCCAGAGAGCTTTGCCACCTCCGTGGCCGC
CTGCAAAGCCGCGTCGAGGAGCTTGAGTCGGACGCAGGAAAGGGGCTTCA
TGGCGGAGAtaggagatggggaggaccGACCACTTGTCGATCTTCCTGGG
CCCGCGTCAGCTCCGCTATCCggtgctctctcctccccactgCAGAACCT
CTCCACTGCCAGGGGCCCCGTGGCGCCGCCCTCGACCTTCGCCATGGCAA
CGGGACGCGCCGgtcccctgtcctcccctttgtccGGATCTCTGGGCAAA
AAGGCTTCCCCTTGGCCCTTCCGGTCCATTCAAAACGTACAGCGCGAGCG
GGAGCTAGGGACTCGGGGAGCTCCCACACTGGCCGCAATGACACCTCCCG
CACCCCTTCAGGTCGCTGCGTGCCGTTTGCAAGAATTGGTAAAGGATCTG
CAGGAACATGCGAGCAGGAGGCTAGAAAAGGACCGCAGCCAAGGAAGCAG
GAGCCAAGAGATACAGCAGCAGacaccccttccaccttcgcTATCCTCTC
AAAGACTGTTGAAGTCGTGTTCTTTTTTACATGCATCTTCCTTGGACCTG
CGATTGAGTGATATATCAGCTCTTCTAGCAGAGTATAGGTGCCTTGTGGC
TGTGGCTGATCAGTGTTTGGAGCTGCTGCAACACAACTGCAAATAA

Synonyms

Publications