|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100093g21.5096.mrna |
| Orig protein id | gnl|cribi|Naga_100093g21.5096 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:402291..405281 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4368 ID=rna4368|Name=rna4368|organism=Nannochloropsis gaditana|type=mRNA|length=1520bp
CGGATTTTGGGACGAAAGTGGCGCCTATAATTGCCCCCAGGGTTTCGGCC
TTGCTGACCTCATGATCGCTCATCCACGCCTCATGCATGCACGCATTATT
TGATCCGACAGTGCATCCACAGGGGATACGAGCAGGTGATTCGCGACACG
TGACTACTGAGTTTGCTACCGTGGCTGTGAAAGGATGTCTTGGCATGCTC
TGGGGCGCAACAACCGAGGCAGACAAGATTTAGGGCGGGGCCTGGGCATA
CGTGTGTGTGTCCTCGTCCTCGCCATGACGATGCCGCACAGAATAGGGGG
ATTCGTGCTACCGAAGCCCGGAGTCACGCTAGCGCCTCGAATCCCTCAAT
TACTAGTCCCCTCTTGTACGCCTAGCTTCTCTGCCCCCCTTGTCGCAGCC
CCTCGGAACGCGGCGAGAAGAAGAAGAGCCTCTTCGATGCCTCCCTTCCA
CGCATTGGGCCCCAAGAAGCAAGAGTCAGAATCGGTGCCGAAAATCAAGG
CCGTCGGTAACGCAGGAGAATTTGACGGATCGATCTGGCACCCAGAGCAT
CCCTACCGGGATGCCTTCGTCAAGACCGGCCTCAGCGTGGGGTCTGCCCT
CTTGTTCGGCCTGGGGGTGTGGGCTTGGAAGGGTGCCGACTCAGGACTCG
AATACTATGCTGGTTATTTAGTGGAGCAGTCGCTCTCCGTTGACAACCTC
TTCGTGTTTGTGGTACTGTTTGAGTACTTCAAAGTCCCCACGGACTTCCA
AGGTCGCGTTTTGAGCTGGGGTATATTCGGGGCCATGGCGATGCGCGCAG
TGATGGTCTTCGCGGGCGTGGAGGCCATCGAAAACTTTCGGGTAGTTCTC
TTGGCGTTTGCTGGCATTTTGATTTTCACGTCCGTGAAGCTTCTGGCCGA
GGACGAGGGCGAGGGAGGTGAGGAGGATCTGGCAGATAATCAGATCGTCA
AGTTTGCCCGGTCCTTGATCACGACTGTGGACACGTACGACGGCCCCAAT
TTCTTCACCGAGGTGCCTGGCCAGGGGAGAGTAGCGACTCCGCTCCTCCT
CGTCCTGATCTGCGTCGAGCTATCTGACGTGGTCTTTGCTGTCGATTCCG
TCCCGGCCGTGTTCGGCGTGACTAAGGATCCTTTCATTGTCTACACATCA
AATATTTTCGCAATCTTGGGCCTGCGCTCGTTGTACACCGTGCTGGCCAA
TGCCATGGTTGACTTGCCCTATCTGAAGCCTGCTGTCGCCTTGATTCTAG
GACTCGTGGGGTTGAAACTCGGAGCTGAATATTTTGGCTTCGAAGTCTCA
AACGCTGTATCACTGGGAGTGATTACGTCATTGCTTGGATCGGGTGTGTG
GGCCAGTTTGTACCTCAAGCCTGATCGGGAAGGCAGATGAGGCGGCCTCA
ACACGAAGGGGGTGAGGAGGTTGCTGAATCCCAACCAGTGCACGCAGTGT
GCGTAAACAAAACGACACACGCAGCCGCAAACATAAAGAAAACAACCAAA
CATTATACGACTGTGCCCTT back to topprotein sequence of rna4368 >rna4368-protein ID=rna4368-protein|Name=rna4368|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MDPDNLGILLKRAMTHQLPTFLFPPWAPFQDETASVEKSIQAFEGDFPAP
DRFRIGCGLCIFLQDQLLSRSQRLLAFALLARMHRNHPKGSVGNPFLPFF
LAAFEQGPGSGGAAGDDTAALDMAEKIFVAELLLNPSGANVVFEDTPHLL
LARLRQRQAKENVEVLQKRLVPALMALKSSYIDTPEAKEAMQGLRGLGVW
PHVRDPVGGREGGVGVPGGMEEFKGGAGASEPAQHVQRYAMPGVSLYDLG
LEGEEDMAALSLHSFEPAFVRPPPPVLGVAETEWIWLNPDYASKLMWDAA
MGEDDGKGAEVREVMAKAFRGPLVPQQQQQVLRELEGDARLIHYCGLTPQ
KLPELVENNPMIAIECLLKLMSSVHKNEYLSALVNMEMSLHSMEVVNRLT
TVVPLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKII
HVQDLYIEVQAFCIEFSRIREAAGLFRLLKTLE back to topmRNA from alignment at CM002463.1:402291..405281+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4368 ID=rna4368|Name=rna4368|organism=Nannochloropsis gaditana|type=mRNA|length=2991bp|location=Sequence derived from alignment at CM002463.1:402291..405281+ (Nannochloropsis gaditana)
ACCCACACCAAGCCTGGACTCGTACAAAACCATACCGACACGATTTGTGC
CCTATGACTTCTCATCTCTCACTCTCGTTCACTTTAAATTTCTCGCACAG
CCGACCGCAGTCGCTATGGACGCGCATTTGGCAAATCAAGGCTCACATCG
AGGATAGGAAATCACACCATCATGTCGGCAGCACCTCCCCAGAGTCTTGC
TCAGCCTCAGCTGATAAAACAGAGCGAAGTGGTCCGACTGCTGGGCCTTC
TCAATGTACGTTGCATGTCGAGGAATATTCCATGTGTGATCATGCCTTTT
GTCATCGCACTTTTTTGACGGTGGAATTCAAACttcacctcttcctttgt
ccttctctttcttctctgttCCGCCCAATCTGATGTGCGCGCACATTTGC
TAGCATTGGATGCATGGATCCAGACAATCTAGGGATTCTTTTAAAGAGAG
CCATGACTCATCAGCTCCCgaccttcctttttcccccttgggCCCCATTC
CAGGACGAGACAGCCTCCGTTGAGAAGAGTATACAGGCCTTTGAGGGCGA
CTTCCCGGCCCCGGACCGCTTTCGAATCGGTTGCGGCCTGTGCATATTTT
TACAAGACCAGCTTCTGAGCCGGTCGCAGCGCCTACTTGCCTTTGCCTTA
CTTGCCCGCATGCACCGAAACCACCCGAAAGGCAGCGTGGgcaacccctt
cctcccctttttcctggcCGCGTTTGAGCAAGGTCCTGGGAGTGGAGGCG
CGGCGGGGGACGATACTGCGGCCTTGGACATGGCCGAGAAAATATTCGTG
GCGGAGCTGTTGCTCAATCCATCGGGCGCAAACGTTGTATTTGAGGACAC
TCCTCACCTCTTGCTGGCTCGGCTCCGGCAACGACAAGCGAAAGAAAATG
TGGAGGTGCTCCAGAAACGTCTGGTCCCGGCGTTGATGGCCTTGAAGTCT
TCGTACATCGATACCCCCGAGGCCAAGGAAGCCATGCAAGGGTTGCGGGG
CCTTGGGGTGTGGCCGCACGTTCGAGACCCGGTGggcggtcgggaggggg
gcgtcggggtgccgggagggatggaggagttcaaaggcggggcgggggcg
tcgGAGCCCGCACAGCATGTGCAGCGGTACGCGATGCCTGGGGTCTCCCT
TTACGACCTgggtctggagggagaggaggacatggctgCCCTGTCGCTGC
ACAGCTTTGAGCCCGCTTTCGtgcggcccccgcccccggtcTTGGGCGTG
GCAGAGACGGAATGGATCTGGTTGAACCCGGACTACGCCTCCAAATTGAT
GTGGGACGCGGccatgggggaggatgacggaaaAGGCgcggaggtgaggg
aggtgatggcgaAAGCCTTCCGGGGGCCGTTGGTTccacaacagcagcaa
caggtCTTACGGGAGCTGGAAGGAGACGCGCGCCTGATCCATTACTGTGG
TTTGACGCCGCAGAAACTACCAGAGCTGGTGGAGAACAATCCGATGATCG
CGATCGAGTGCCTACTCAAGCTCATgtcctcggtccacaagaaCGAGTAC
CTGTCCGCCCTCGTGAACATGGAGATGTCGCTTCATTCGATGGAAGTGGT
CAACCGGCTTACCACCGTGGTGCCTTTGCCCACGGAATTCATCCACTTGT
ACATCAGCAActgcatctcctcctgcgaGAACATCAAGGACAAGTACATG
CAAAACCGACTCGTCCGGCTCGTCTGCGTGTTCCTGCAGTCCCTCATCCG
AAACAAGATCATACACGTCCAAGACCTCTACATCGAAGTCCAGGCCTTTT
GCATCGAGTTCTCCAGGAtcagggaggcagcggggcTCTTCCGGCTGCTC
AAGACATTGGAAtaaaagggggagggtaaTGTTTGGAAAATGCCACacca
aggaaaagaaaaagacgaccCGGAAGATAGCCTCCGACGGTTCTGGCAGC
ACCTTTGCTTAATCTCGCGAGCGGTGCATCCAGTGCTGCCCCTTTATGCT
TTGAGTCAGACCTGACTGCGGGTTCGTCTACGTGCtacctacctcccccc
cctcttctacAATATGTTCGTCAGCAACTCGGCAtattccttctcttcca
ccgaCGCCTGGGGCAAGTActcgcccatctcctccctcgttacCCACACG
aattcctccactccctctcccacgacTTTGCCCCGCCCTTTCAGGTGCTG
TGCCCTGTAAAAGAAGACCTTGTCGCCGTAAGtctgctcccctcctgtct
tcccAGTGCTCGGCTCGGAAGGAACCCGCCAGTGCATGCCCACGGGGGCG
TTGGACGGCACATAAGCCTCGAATTTATCCCCCAAAAATCTTCTGACCGT
TGCCTCGTGCGTCTTTCTCATGGATAGCCCCTTCATgtccccgccctttc
ccccgccctccaagaCGGCCATGGGCAagtcccaccttccccgcgTCACG
GGTCCTCGGATCAGGAGGAACAGACGTTCTGCCAAGGCACGATTTAGCGT
CGTCCGGTCGTTGAGACGGTCCGCCTTCGTCACCCTGGGGGCGAGCTTGA
AAGGGAGCTCGGGCAGGACTTCGTCGTCGGATCGATCGAGCTCAGCGGCT
TGGCCCATCAGATTCAGCTCCGGGGGAAAGACCTGCCCAAGGagtggagc
aggaagagaatgCGTGGACATCATGCCAAGTCGGCCGGCAAAGGGGCCGT
AGTGCGTGCACGAGGGTCAGAAAATGCTTCGCTCCAATGTCTCTTTCCCT
ACCTTGCCATGCTTTGCGATCTCCTCTTGCATTTCCATGTACGCAGCCTC
CCAGTCCTCGGGTTCTTTCATGATGATGGGATGACGTTCCACAATACTGC
GGCATATGAaaggtagaagaggagaataAAGTCGAGGAACCATGAATTTC
AAGCCACCCCCCATGCCAAAAGAGACACGCCCGAAGGGTAAAGAAGTCCA
CGCACCTTGCAGCCACGATGCGCCACGGCAAATTGGCTTCT back to topCoding sequence (CDS) from alignment at CM002463.1:402291..405281+ >rna4368 ID=rna4368|Name=rna4368|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002463.1:402291..405281+ (Nannochloropsis gaditana)
ATGGATCCAGACAATCTAGGGATTCTTTTAAAGAGAGCCATGACTCATCA
GCTCCCgaccttcctttttcccccttgggCCCCATTCCAGGACGAGACAG
CCTCCGTTGAGAAGAGTATACAGGCCTTTGAGGGCGACTTCCCGGCCCCG
GACCGCTTTCGAATCGGTTGCGGCCTGTGCATATTTTTACAAGACCAGCT
TCTGAGCCGGTCGCAGCGCCTACTTGCCTTTGCCTTACTTGCCCGCATGC
ACCGAAACCACCCGAAAGGCAGCGTGGgcaaccccttcctcccctttttc
ctggcCGCGTTTGAGCAAGGTCCTGGGAGTGGAGGCGCGGCGGGGGACGA
TACTGCGGCCTTGGACATGGCCGAGAAAATATTCGTGGCGGAGCTGTTGC
TCAATCCATCGGGCGCAAACGTTGTATTTGAGGACACTCCTCACCTCTTG
CTGGCTCGGCTCCGGCAACGACAAGCGAAAGAAAATGTGGAGGTGCTCCA
GAAACGTCTGGTCCCGGCGTTGATGGCCTTGAAGTCTTCGTACATCGATA
CCCCCGAGGCCAAGGAAGCCATGCAAGGGTTGCGGGGCCTTGGGGTGTGG
CCGCACGTTCGAGACCCGGTGggcggtcgggaggggggcgtcggggtgcc
gggagggatggaggagttcaaaggcggggcgggggcgtcgGAGCCCGCAC
AGCATGTGCAGCGGTACGCGATGCCTGGGGTCTCCCTTTACGACCTgggt
ctggagggagaggaggacatggctgCCCTGTCGCTGCACAGCTTTGAGCC
CGCTTTCGtgcggcccccgcccccggtcTTGGGCGTGGCAGAGACGGAAT
GGATCTGGTTGAACCCGGACTACGCCTCCAAATTGATGTGGGACGCGGcc
atgggggaggatgacggaaaAGGCgcggaggtgagggaggtgatggcgaA
AGCCTTCCGGGGGCCGTTGGTTccacaacagcagcaacaggtCTTACGGG
AGCTGGAAGGAGACGCGCGCCTGATCCATTACTGTGGTTTGACGCCGCAG
AAACTACCAGAGCTGGTGGAGAACAATCCGATGATCGCGATCGAGTGCCT
ACTCAAGCTCATgtcctcggtccacaagaaCGAGTACCTGTCCGCCCTCG
TGAACATGGAGATGTCGCTTCATTCGATGGAAGTGGTCAACCGGCTTACC
ACCGTGGTGCCTTTGCCCACGGAATTCATCCACTTGTACATCAGCAActg
catctcctcctgcgaGAACATCAAGGACAAGTACATGCAAAACCGACTCG
TCCGGCTCGTCTGCGTGTTCCTGCAGTCCCTCATCCGAAACAAGATCATA
CACGTCCAAGACCTCTACATCGAAGTCCAGGCCTTTTGCATCGAGTTCTC
CAGGAtcagggaggcagcggggcTCTTCCGGCTGCTCAAGACATTGGAAt
aa back to top
|