rna4367, rna4367 (mRNA) Nannochloropsis gaditana

Overview
Namerna4367
Unique Namerna4367
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2013
Alignment locationCM002463.1:398541..400060 -

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Properties
Property NameValue
ProductIntegral membrane protein TerC
Orig transcript idgnl|cribi|Naga_100078g1.7006.mrna
Orig protein idgnl|cribi|Naga_100078g1.7006
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:398541..400060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100078g1gene4211Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26331.1cds4357Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4367rna4367-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4367 ID=rna4367|Name=rna4367|organism=Nannochloropsis gaditana|type=mRNA|length=2013bp
GCTCGCGATGTCCTAACACAGACAGCACACAGCTCAACATGGCTATTTAC
GCATCGTGATGTGCATACAGGAATAATGTATTTGTCTTCTCTGTCATTTT
TCCCCCGGTGCCCATTTCCTCGCCCATGCGCGAGACTGATAGGGCCTCGA
TCCCATTATCGGCTCACGTGCTCCAATAAACACCCGCGTCACAGGGAAAT
GGGGACGCCAAGTTGTTTATCAGCAGGAGAGCTGCTCAATTCACCATTAC
CATCAGCTCCATCACCGGAGTCTCTGACATCCCGTGATGAGTCGAGCATC
GGATTTACGGAAGACATGATCGAAATGATGGCATCTGCAGCCGCAATTAG
ACCCCCCTCCGTGAATTTGCCACCGCGTGAGAATATCACCCAGGAAAATG
AAAGAAAAACTGATAATTTTTATGATGACCGGTCATCCCGGCATGTGTGC
CTCCAAATGAATGACACAGTGAGTGGCGCGGGTGAAAAGGAGGGTAATCA
GAGCGTCGGTCCAACAGCGCTCCCATCATCCAGGCAAGGATTTTGTAGAC
GGGCATACAAGACGCTGAGAAGGCTGCGATCTATGCTGTTAGTGTTATCT
GTTGTGCTGATATGCGCGGTTGCGGGTAGCTACTTGTGCGTGCGGTATCG
TGACCAAGTCTTGGAGGGATCCGAGTGGATTCGCGCGCACGCCCCCCAAT
CTGCCGTCTACTACGCTTTGATCACTGCCTTGTGGATCATTCTCTGTCTG
CCTTCCACCATCATCGAGCTCTTGGGGGGGGCCATCTTCTCCTACCCTGT
GGCCCTCCTCACCCTGACTGTCGGCAAGCAATTGGGATGCATGCTGGCAT
TTCTCCTCGCCAAGGTCTTCGCATCTCCGACCCTGCGGGATGCCCTGGGT
CATTCCTCACACTCTCCCACACGAGGGAAAGAGCCTAACGAGAGCGTGGT
GGAGAACAACGACCAGGAGGGAGGCGATGCCCCGAGCCTGAGACACTCAA
GGTTTCCTGCGGCGGCCAGGCCGTCCAAGCCCATGTCCAAGAGGAAGCGC
ACGATCCGGGCCATGTTTATTGCCATGGAGTGCCACCCTTGGAAAATAAC
CTTCCTGCTCCGCTTTCTGCCCATTCCCATTTCCATAAAAAATTACGGCA
TGGCCTTCTTGCCCTGCCCCACCCACGTGTTCTTCCTCTGCACGTTCGTA
GCCTCCATCCCCTTCACGTTGATTTGGGTGAATTTGGGAGAATCTACCAA
GAATCTTCTGGAGGCCCTCAATGGTGGGGGTGCAGCGATGAAGAGGCATG
GAATATTCGCACAAGAATTGGGCTTGTTGGTGGTAGGCCTCGCACTCTTG
ATGGTGCTGATCTTCATCTTGCGACGCTACACACAGCGTTACGCCGCGGT
GATCGAAGCCGAAGAGGCCGACGGGGTGGGGACAGGAGCAGAAAGAGCAG
GCGATGGGAAAGGAGAGGAGGATTCGTTGACGCGGGCCGATGAGGGGGGC
TCAAAGAGGGCGGAGGATGACGATCGGCGTGGTGTGGACCCCAAAAAACG
GGGTCATGGCGATTCGAACGAGCGGTCGCAGGCGAAGGGGGCGGGGGAGG
AGGGTCATCCCACGCCGGGAAGGATTTGTTGGGAAGAAATGGAGAGAGAC
ACGGAAGGGGCGGAGGAGGAGGAAAAAGAGGAGAAGCCATCACAGGAAGA
GCCGGAGGGGAGTCCCTCCAGCGTCGCGTCCGTCGCGTAAAGATAGGATT
TTGTATGAGGTTACAATAGCTACATGTGTGTGGTGTGACTGAAATGGAGA
TGAGTGAAATACGTGTGTGAGTGTCCAAAGCTTGAGTTGAGTGAGAGTGC
CGGACGAGAATCGTGCTTGTGCGTGTGGTTTGACAATGTACATACCCAAC
CATTGCACATAAAAATAAGCGACCCTCTAATAAATGGCTGCTTGTCCTGA
AACGTGCCTGCACACCCTGGGAAAGCAATGAGCGACACTTGAAACGTGGA
CGAGCCGGAGCGG
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protein sequence of rna4367

>rna4367-protein ID=rna4367-protein|Name=rna4367|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MSWHALGRNNRGRQDLGRGLGIRVCVLVLAMTMPHRIGGFVLPKPGVTLA
PRIPQLLVPSCTPSFSAPLVAAPRNAARRRRASSMPPFHALGPKKQESES
VPKIKAVGNAGEFDGSIWHPEHPYRDAFVKTGLSVGSALLFGLGVWAWKG
ADSGLEYYAGYLVEQSLSVDNLFVFVVLFEYFKVPTDFQGRVLSWGIFGA
MAMRAVMVFAGVEAIENFRVVLLAFAGILIFTSVKLLAEDEGEGGEEDLA
DNQIVKFARSLITTVDTYDGPNFFTEVPGQGRVATPLLLVLICVELSDVV
FAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLANAMVDLPYLKPA
VALILGLVGLKLGAEYFGFEVSNAVSLGVITSLLGSGVWASLYLKPDREG
R
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mRNA from alignment at CM002463.1:398541..400060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4367 ID=rna4367|Name=rna4367|organism=Nannochloropsis gaditana|type=mRNA|length=1520bp|location=Sequence derived from alignment at CM002463.1:398541..400060- (Nannochloropsis gaditana)
CGGATTTTGGGACGAAAGTGGCGCCTATAATTGCCCCCAGGGTTTCGGCC
TTGCTGACCTCATGATCGCTCATCCACGCCTCATGCATGCACGCATTATT
TGATCCGACAGTGCATCCACAGGGGATACGAGCAGGTGATTCGCGACACG
TGACTACTGAGTTTGCTACCGTGGCTGTGAAAGGATGTCTTGGCATGCTC
TGGGGCGCAACAACCGAGGCAGACAAGATTTAGGGCGGGGCCTGGGCATA
CGTGTGTGTGTCCTCGTCCTCGCCATGACGATGCCGCACAGAATAGGGGG
ATTCGTGCTACCGAAGCCCGGAGTCACGCTAGCGCCTCGAATCCCTCAAT
TACTAGTCCCCTCTTGTACGCCTAGCTTCTCTGCCCCCCTTGTCGCAGCC
CCTCGGAACGCGGCGAGAAGAAGAAGAGCCTCTTCGATGCCTCCCTTCCA
CGCATTGGGCCCCAAGAAGCAAGAGTCAGAATCGGTGCCGAAAATCAAGG
CCGTCGGTAACGCAGGAGAATTTGACGGATCGATCTGGCACCCAGAGCAT
CCCTACCGGGATGCCTTCGTCAAGACCGGCCTCAGCGTGGGGTCTGCCCT
CTTGTTCGGCCTGGGGGTGTGGGCTTGGAAGGGTGCCGACTCAGGACTCG
AATACTATGCTGGTTATTTAGTGGAGCAGTCGCTCTCCGTTGACAACCTC
TTCGTGTTTGTGGTACTGTTTGAGTACTTCAAAGTCCCCACGGACTTCCA
AGGTCGCGTTTTGAGCTGGGGTATATTCGGGGCCATGGCGATGCGCGCAG
TGATGGTCTTCGCGGGCGTGGAGGCCATCGAAAACTTTCGGGTAGTTCTC
TTGGCGTTTGCTGGCATTTTGATTTTCACGTCCGTGAAGCTTCTGGCCGA
GGACGAGGGCGAGGGAGGTGAGGAGGATCTGGCAGATAATCAGATCGTCA
AGTTTGCCCGGTCCTTGATCACGACTGTGGACACGTACGACGGCCCCAAT
TTCTTCACCGAGGTGCCTGGCCAGGGGAGAGTAGCGACTCCGCTCCTCCT
CGTCCTGATCTGCGTCGAGCTATCTGACGTGGTCTTTGCTGTCGATTCCG
TCCCGGCCGTGTTCGGCGTGACTAAGGATCCTTTCATTGTCTACACATCA
AATATTTTCGCAATCTTGGGCCTGCGCTCGTTGTACACCGTGCTGGCCAA
TGCCATGGTTGACTTGCCCTATCTGAAGCCTGCTGTCGCCTTGATTCTAG
GACTCGTGGGGTTGAAACTCGGAGCTGAATATTTTGGCTTCGAAGTCTCA
AACGCTGTATCACTGGGAGTGATTACGTCATTGCTTGGATCGGGTGTGTG
GGCCAGTTTGTACCTCAAGCCTGATCGGGAAGGCAGATGAGGCGGCCTCA
ACACGAAGGGGGTGAGGAGGTTGCTGAATCCCAACCAGTGCACGCAGTGT
GCGTAAACAAAACGACACACGCAGCCGCAAACATAAAGAAAACAACCAAA
CATTATACGACTGTGCCCTT
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Coding sequence (CDS) from alignment at CM002463.1:398541..400060-

>rna4367 ID=rna4367|Name=rna4367|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002463.1:398541..400060- (Nannochloropsis gaditana)
ATGTCTTGGCATGCTCTGGGGCGCAACAACCGAGGCAGACAAGATTTAGG
GCGGGGCCTGGGCATACGTGTGTGTGTCCTCGTCCTCGCCATGACGATGC
CGCACAGAATAGGGGGATTCGTGCTACCGAAGCCCGGAGTCACGCTAGCG
CCTCGAATCCCTCAATTACTAGTCCCCTCTTGTACGCCTAGCTTCTCTGC
CCCCCTTGTCGCAGCCCCTCGGAACGCGGCGAGAAGAAGAAGAGCCTCTT
CGATGCCTCCCTTCCACGCATTGGGCCCCAAGAAGCAAGAGTCAGAATCG
GTGCCGAAAATCAAGGCCGTCGGTAACGCAGGAGAATTTGACGGATCGAT
CTGGCACCCAGAGCATCCCTACCGGGATGCCTTCGTCAAGACCGGCCTCA
GCGTGGGGTCTGCCCTCTTGTTCGGCCTGGGGGTGTGGGCTTGGAAGGGT
GCCGACTCAGGACTCGAATACTATGCTGGTTATTTAGTGGAGCAGTCGCT
CTCCGTTGACAACCTCTTCGTGTTTGTGGTACTGTTTGAGTACTTCAAAG
TCCCCACGGACTTCCAAGGTCGCGTTTTGAGCTGGGGTATATTCGGGGCC
ATGGCGATGCGCGCAGTGATGGTCTTCGCGGGCGTGGAGGCCATCGAAAA
CTTTCGGGTAGTTCTCTTGGCGTTTGCTGGCATTTTGATTTTCACGTCCG
TGAAGCTTCTGGCCGAGGACGAGGGCGAGGGAGGTGAGGAGGATCTGGCA
GATAATCAGATCGTCAAGTTTGCCCGGTCCTTGATCACGACTGTGGACAC
GTACGACGGCCCCAATTTCTTCACCGAGGTGCCTGGCCAGGGGAGAGTAG
CGACTCCGCTCCTCCTCGTCCTGATCTGCGTCGAGCTATCTGACGTGGTC
TTTGCTGTCGATTCCGTCCCGGCCGTGTTCGGCGTGACTAAGGATCCTTT
CATTGTCTACACATCAAATATTTTCGCAATCTTGGGCCTGCGCTCGTTGT
ACACCGTGCTGGCCAATGCCATGGTTGACTTGCCCTATCTGAAGCCTGCT
GTCGCCTTGATTCTAGGACTCGTGGGGTTGAAACTCGGAGCTGAATATTT
TGGCTTCGAAGTCTCAAACGCTGTATCACTGGGAGTGATTACGTCATTGC
TTGGATCGGGTGTGTGGGCCAGTTTGTACCTCAAGCCTGATCGGGAAGGC
AGATGA
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Synonyms
Publications