rna4363, rna4363 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4363
Unique Name	rna4363
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3283
Alignment location	CM002463.1:387092..388229 +

Link to JBrowse

Properties


Property Name	Value
Product	cell division protein
Orig transcript id	gnl\|cribi\|Naga_100078g5.6996.mrna
Orig protein id	gnl\|cribi\|Naga_100078g5.6996
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:387092..388229 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100078g5	gene4207	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4363	rna4363-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26321.1	cds4353	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:387092..388229+
coding sequence from alignment at CM002463.1:387092..388229+

mRNA sequence

>rna4363 ID=rna4363|Name=rna4363|organism=Nannochloropsis gaditana|type=mRNA|length=3283bp
ATTACGATGGAGCCCGCATTCCGAGATGTGGGCCATATGCCGGGGCTTGA
ATTGTGGCGCATTCAGGACCTTACGCCCGTTAAACAGACTATCATAAATG
GTCATTTCCACAAAGGTAATGCTTACATATTGTTAAGCACTTTTAAGAAA
ACCGGGGACACAACTTTTGAGCATGCTATCCATATTTGGTGGGGTAGCGA
GGCCAGTCAGAACGAAGTGGCAGCGGCGGCCAGGAAAACTGTCGAACTGG
ACGATGCTGTGGGTGGAGCGCAAGTACATTACCGAGAAATTGGGGGACAC
GAGTCTGCTTTATTTTTGTCGTATTTTAAAGATTTTGGGGGCCTAAGGTA
CCTAGCGGGTGCGGATGGATTCGCTCCGGTGGAACGTGACGGCATGCTGA
GCCGCTTGCTGCACGTCGAAGGCCTGGGGGTCGTCCGTGCGACGGAGGTT
CCAACCCAACGCAGTAGTCTGAACGCAGGGGGCTGCTTTCTCCTCGACAC
AGGTCTGAAACTTTTCCTCTGGAACGGGCCCGGCGCCAATTGTTTCGAGA
AGGCCAAAGCTTTAGAGCTGGCAATGCGCATAAAAGACGCGGAACGTGGA
GGCCGGGCTGAGATTTTGGCTGTGAACGAACTTGACAAGGAAGATGAAGG
AACTTGTGCGAGCTTTTGGGACGCATTGGGGGGGGACAGGGCACCACTAA
CTGTTTCCTCGGGATCCCACGCATCAAACGAGGCGAGGGAAGTCGTGCTC
GCCCGGATCACGTCCGGGCCCACGGGGGATCTGACGGTGACCCCAATCTC
AGCGACGCACAAAGGCCTCAAACGCTCTATGTTGGCGAGCGAGGCTGTCT
TTGTGCTGGACGCTGGGGCATCCCACTGCGTCTGGGCCTGGGTGGGAAAG
GCGGCGACCGAGACGGAGAAAAGGGAGGGCCTGGCCCTGGCAGTTAGCTT
CGTCGAAAAGACGCACCGCTCTGCAATGGAGGTGCCGGTGGTTCGCGTCA
TGGAGGGGAGCGAGACGGCCGCCTTCATCAGCCATTTCGCCGAGTGGGAC
GCCCCCTATGCCTTGAAATTTGATGCGATCGCGAGGTATACGGGTGAGGG
CGGCGGGACCGACGGAGCCCCGTCCCAGGAGGGGGAAGAGCAGGACGAGA
CCAGGACCACGCTCGCCGAGCGCCTCCGCCAGGAGGAAAGGCCGCTGACG
GAGGAAGGCGACAGGCCAGGTACCCTGCGGATATGGCGCATCGAGAAAAC
GCACAAGGTGGAGGTCCCCCTGGAGGAGCACGGGCTGTTCGAGGGCGGGA
GCTCCTACCTGGTCCTCCACTCCTGCTCTCGGGGAGACACAGAGACGGAG
GCACATAGCCTGTACTTGTGGCAAGGGGCGGCGTCGAAGGTGGACGCGGA
AGAGGCGTGGGCCCTGCTGGGAGAGGAGACCGAGGAGGACGGAGGGAGCC
GGTCGGTGGGGGTCCGGGTCCTGCAAGGACACGAGCCGGCCCATTTCCGG
CGCCTGTTCCAAGGCCGCCTGGTCCTCTTCGCGGGGGGTGTCGGGGGTGG
ATGCGGCCATGGAAAGAAGCGGGAATCCGACGCGAGCCTGGGGGCCGCGC
GCATTCCCGCCTTGTTTCGCGCCAAGGGGCTGGCGCCTGAGGATTCCTGT
GCGGTGGAGGTCCCAGTCACCGCCCAGAGCCTGAACTCGGAGAATTGCTT
CATCCTCTCCGAACCGGGCGACAGCTTGCTGTTTGTGTGGTGGGGCACGG
GGGCCACTCCCGCAGAGCGAGACGCAGCCATGCACCTGGGCGATGTGCTC
TATCGCTGGCAGGAGCAACAGGAGCCGGGAAGGGGCGCGGGCGAAGGGGC
GGTGGAGATGGTCGCGGTGGAAGAGGGGGAGGAGCCCGATGAGTTCTGGA
CGAGTATGGGTGGATTAGCCACTTATCCGAAGCGGCAAGCCGGTGAGGCG
CAGGTGCCTCGCGAGCCTCGCCTGTTTGCCCTTGGCGACGCCACAGGGAG
CTCGCGGATGGAGGAGATGGCGGGCTTCGTGCAGGCTGACTTGGATGGGT
CAAAGTTTTGCCTTTTGGACACGTACCGGCACGTCTTTGTGTGGGTGGGC
GATCAGGCGCAGGAGAAGGAGAGGAAGGAAGCCTGGAAAATGGGCCAAGA
TTATCTCGATCAAGCGATGGACGGGCGGGACCCTGGCACCCCCCTGGTGC
GAGTGAGCGCCGGCTGCGAACCGTCCCTGTTCACACAGCACTTCGCGGAC
TGGGACGTGACAAGGGCGGCGACGTTGGCGCGTGGGGACGCGTATGAGGA
AAGGTTGGCGCGGGTGCTGGCGGAAAGGGTAGAGGCCCATGGGGCGGTGG
AGGCCGTGGCAGCCGTGGTGGAGGATTGGGAGAACGAAATAGACAAAAAC
GTCGTGGAAAGTGTGGATAAGCCTGTGGCAGCCGCCACTGCCATGCTGGT
GCCAGACGAGGCCTCAGAGGCAAGCCCTTACGACATGGACCGTCCTACCT
CCTTGACCGCCCCGACCGCCGTGGTCCTAGAAGGAGCCTCGCACAACTCG
GAGACGCAGTGTCAAGCCGACAAAGCTGCCCCCTGTCAGTTCTCCTCTCT
GTCCTCCGCAACGACTACGCATGCCTCGGTTGCTCCAGGCCCTCCTCCGC
CTGCGCTCCCCGTGTCCTCGAACCCTCCTGCCTCTTTGCCGCCCTCTACG
CCGTCGGCTGCCACCGTGACAATAGTCCCTACCCCTCAGGAGGCGGCGGG
CGATCCCACAAGGCGGGAAGCCATGCTCTCTGATGAAGAGTTTGCAGCCA
CTTTTAAAGGGAGAAGTAAAGTGGAGTTCTACGCGTTACCGAAATGGAAG
CAGGTGGCTTTGAAGAAGCAGGCGGGCTTGTTTTGAGAGGCTGCGGGAAA
AAGGAAACCAGGAAGGTTCGAGCGCGAGTGACTTTGAATTTGAGTTTTGG
ATTGGGAAGTAGATTGTTGACACACTTTCGGTATACGTTAGTTTTGGACT
GCGAATGCGACGGATCGAACCAAATGAGTACATAAGTGATGATCCAGGCG
GCCTCAAGCGGGGGCTTGTAGCCCCTGTAACACAGTAGTGGAGTATGAGT
GGTCGGAACGGCAAGCAAAAATGCTTCAATAAATTTGTTTGACAATTGAA
AAGAAAAATCATAGGGTGTCTGTATGTATATTTACTTTCCCATTTTTTGC
AGGTACTTGCGTGCAAGACAGGTAAGTACATTATTTTTGTACACGCCTCT
AAAAGAGCAAACCCTTCACTCTTCACAACCTCA

protein sequence of rna4363

>rna4363-protein ID=rna4363-protein|Name=rna4363|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MGKVVRDLYYRKAKEVGFRARSAFKLLQLDEEFGLFRNVQKAVDLCAAPG
SWSQVLATRLYPDSAFTDDKGGERERVIAVDLQEMAPIPGVRQLQGDITS
QATADTIIGHFEGQRVDLVVCDGAPDVTGLHDMDEFLQAQLIFGALAITT
HVLASGGKFVAKVFRGRDLTLLAAQLRLFFESITVAKPASSRINSSECFV
VCEGFQGPIPAHGYIPEMVTPTLGQGSRDQAAQTEKDAQRDEEEDSGENR
ALKIAVRCYVEQGDLSGFPMPGIPADVSKDR

mRNA from alignment at CM002463.1:387092..388229+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4363 ID=rna4363|Name=rna4363|organism=Nannochloropsis gaditana|type=mRNA|length=1138bp|location=Sequence derived from alignment at CM002463.1:387092..388229+ (Nannochloropsis gaditana)
CGTAGAACAGGGCACGCAGGCCATGGGTAAGGTTGTAAGGGACCTTTACT
ATCgaaaggcgaaggaggtCGGCTTTCGGGCCCGCAGCGCGTTCAAACTC
CTGCAGCTGGATGAGGAGTTCGGTCTTTTCAGGAATGTACAGAAGGCCGT
CGATCTGTGTGCCGCACCCGGGAGTTGGAGTCAGGTTTTAGCCACGCGTT
TATATCCTGACAGTGCCTTCACTGATGACAAAGGTGGTGAAAGAGAGCGA
GTAATTGCTGTGGATCTGCAAGAAATGGCGCCGATCCCAGGTGTGCGTCA
ATTGCAGGGAGACATTACGTCTCAGGTGAGAGGCTAGTTGCTagttggag
gggggaagatctTGAGCTTTTCTATGAATACACTCCTGGGATGTTTCGAC
GCATCCACACTGTGTTGTGTTCACACTATTTTTTTGTATGTGTGCTTACT
GTAAATACGGATTAATTGATCCCTCTGCAGGCCACAGCCGACACAATCAT
CGGGCACTTTGAGGGGCAAAGGGTCGATTTAGTTGTCTGCGACGGTGCCC
CTGACGTGACGGGTTTGCACGATATGGATGAATTTTTACAAGCCCAGCTA
ATATTCGGAGCGCTTGCCATTACGACGCACGTCCTTGCTTCGGGGGGGAA
GTTCGTCGCGAAGGTCTTCCGGGGCCGCGACTTGACCTTGTTGGCGGCTC
AGCTGCGTCTCTTCTTTGAAAGCATAACGGTTGCCAAGCCAGCGAGTAGT
CGTATCAACTCTAGTGAATGTTTTGTCGTGTGCGAGGGGTTCCAGGGGCC
TATACCTGCGCATGGTTACATCCCTGAGATGGTCACTCCCACATTGGGAC
AAGGCAGTCGAGACCAGGCGGCTCAGACGGAGAAGGATGCGCaaagggac
gaagaggaagattcTGGGGAGAATCGAGCACTGAAAATTGCGGTCAGGTG
TTACGTGGAACAGGGGGACTTGTCCGGTTTCCCAATGCCTGGTATACCGG
CTGATGTGTCTAAAGATAGATAGATGCGCATTGAAAAGGAATACACTTGG
TGTATACACGCACAAACGGCTGCCTTTTTGGGCAGAGAGAGATGCCCATT
ACTTCATGGTCTTCTGGGTCCAGCAAAGGGGCAACTTC

Coding sequence (CDS) from alignment at CM002463.1:387092..388229+

>rna4363 ID=rna4363|Name=rna4363|organism=Nannochloropsis gaditana|type=CDS|length=1692bp|location=Sequence derived from alignment at CM002463.1:387092..388229+ (Nannochloropsis gaditana)
ATGGGTAAGGTTGTAAGGGACCTTTACTATCgaaaggcgaaggaggtCGG
CTTTCGGGCCCGCAGCGCGTTCAAACTCCTGCAGCTGGATGAGGAGTTCG
GTCTTTTCAGGAATGTACAGAAGGCCGTCGATCTGTGTGCCGCACCCGGG
AGTTGGAGTCAGGTTTTAGCCACGCGTTTATATCCTGACAGTGCCTTCAC
TGATGACAAAGGTGGTGAAAGAGAGCGAGTAATTGCTGTGGATCTGCAAG
AAATGGCGCCGATCCCAGGTGTGCGTCAATTGCAGGGAGACATTACGTCT
CAGGCCACAGCCGACACAATCATCGGGCACTTTGAGGGGCAAAGGGTCGA
TTTAGTTGTCTGCGACGGTGCCCCTGACGTGACGGGTTTGCACGATATGG
ATGAATTTTTACAAGCCCAGCTAATATTCGGAGCGCTTGCCATTACGACG
CACGTCCTTGCTTCGGGGGGGAAGTTCGTCGCGAAGGTCTTCCGGGGCCG
CGACTTGACCTTGTTGGCGGCTCAGCTGCGTCTCTTCTTTGAAAGCATAA
CGGTTGCCAAGCCAGCGAGTAGTCGTATCAACTCTAGTGAATGTTTTGTC
GTGTGCGAGGGGTTCCAGGGGCCTATACCTGCGCATGGTTACATCCCTGA
GATGGTCACTCCCACATTGGGACAAGGCAGTCGAGACCAGGCGGCTCAGA
CGGAGAAGGATGCGCaaagggacgaagaggaagattcTGGGGAGAATCGA
GCACTGAAAATTGCGGTCAGGTGTTACGTGGAACAGGGGGACTTGTCCGG
TTTCCCAATGCCTGGTATACCGGCTGATGTGTCTAAAGATAGATAGATGG
GTAAGGTTGTAAGGGACCTTTACTATCgaaaggcgaaggaggtCGGCTTT
CGGGCCCGCAGCGCGTTCAAACTCCTGCAGCTGGATGAGGAGTTCGGTCT
TTTCAGGAATGTACAGAAGGCCGTCGATCTGTGTGCCGCACCCGGGAGTT
GGAGTCAGGTTTTAGCCACGCGTTTATATCCTGACAGTGCCTTCACTGAT
GACAAAGGTGGTGAAAGAGAGCGAGTAATTGCTGTGGATCTGCAAGAAAT
GGCGCCGATCCCAGGTGTGCGTCAATTGCAGGGAGACATTACGTCTCAGG
CCACAGCCGACACAATCATCGGGCACTTTGAGGGGCAAAGGGTCGATTTA
GTTGTCTGCGACGGTGCCCCTGACGTGACGGGTTTGCACGATATGGATGA
ATTTTTACAAGCCCAGCTAATATTCGGAGCGCTTGCCATTACGACGCACG
TCCTTGCTTCGGGGGGGAAGTTCGTCGCGAAGGTCTTCCGGGGCCGCGAC
TTGACCTTGTTGGCGGCTCAGCTGCGTCTCTTCTTTGAAAGCATAACGGT
TGCCAAGCCAGCGAGTAGTCGTATCAACTCTAGTGAATGTTTTGTCGTGT
GCGAGGGGTTCCAGGGGCCTATACCTGCGCATGGTTACATCCCTGAGATG
GTCACTCCCACATTGGGACAAGGCAGTCGAGACCAGGCGGCTCAGACGGA
GAAGGATGCGCaaagggacgaagaggaagattcTGGGGAGAATCGAGCAC
TGAAAATTGCGGTCAGGTGTTACGTGGAACAGGGGGACTTGTCCGGTTTC
CCAATGCCTGGTATACCGGCTGATGTGTCTAAAGATAGATAG

Synonyms

Publications