rna4354, rna4354 (mRNA) Nannochloropsis gaditana

Overview
Namerna4354
Unique Namerna4354
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1314
Alignment locationCM002463.1:365603..367189 -

Link to JBrowse

Properties
Property NameValue
Productelongation factor 3
Orig transcript idgnl|cribi|Naga_100078g15.7008.mrna
Orig protein idgnl|cribi|Naga_100078g15.7008
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:365603..367189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100078g15gene4198Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26333.1cds4344Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4354rna4354-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4354 ID=rna4354|Name=rna4354|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp
ATGAAGGGCAACCTGAACGACTTCGTTGCCAAGTTCCCGGAGAAAAAGAG
CTACTTCATCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCCCG
GGCCCCTGGAAGGCGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGACG
GGCGTGACTTTCCAGTACCCGACGCGCGACAAGCCGACGGTCATGGACAT
CTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAACG
GGGCGGGTAAGTCTACGGCCATCAAGCTCTTGATCGGCGAGCTGACGCCG
TCGGAGGGTGTCATTACCAAGCACCCGAACATGCGCCTGGCCTACGTGGC
CCAGCACGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCC
AGTACATCATGTGGCGGTTCGCGGGGAACGAGGACAAGGAGTCCCTGGAC
CTCCTGAACAAGAAGAAGGAGGTGGACAAGGAGGTGACCAAGTACTTCAT
CCGGGAAGGGACGACGCTCTGCCAGTGCTACTCCCCCGCGGAGGAGAAGC
TGGCGGTGGAGCCTGAGGCGATCATCAACCGGCACGAGGACAAGAAGGCC
AAGACGAAGGAGTACGAGGTGAAGTGGCGGGGCAAGTCCACCGACTGCAA
CCTGTGGGTCAAGCGAGACGTGCTCCTGTCCATGGGCGCCGAGAAAATGG
TGCAGAAATTCGACGAGAAGATGGCGGCGGAGGCGGGGCTCCAGTTCAAG
CCCCTGACCACTTCCGCGATCGAGAAGCACTTGGCCGACTTTGGGATCGA
TCCGGAGGATGCCTCCCACACCCTGATCAAGTCCCTCTCGGGCGGGCAGA
AGATCAAGGTGGTGATGGCCGCGTGCTTCTGGCAGAACCCGCACATCATC
GTCCTGGACGAGCCCACCAACTACCTGGACCGGGACTCCCTCGGCGCCTT
GGTGCAGGCCATTCACGACTACAAGGGGGGCGTCATCATCATCTCCCACA
ACCGAGAGTTCGCGGGGGCGGTCTGCCAAGAGAAGTGGATCATGGACAAG
GGCCGCTTGCGTCGGGAGGGGGAGTCAGTGGCCACCCGCGAGGAGGAGGA
GGTGAAGGAAGAGCTGGGTGACAAGGTGGTGATCGACGCGTTGGGAAATG
AGATCAAGGTGAACAAGCAAACGACATTGTCAGACAAGGAGAAGAAGAAG
GAGATCAAGCGTATTCAAAAGCTGATTACGGATGGAAAGAAGAAGAAGAC
AATCAGCGAGGACGAAATTCTGGACTTGGAGTTGAAGCTGGAGGAGCTGA
AGACGGCACCTTAA
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protein sequence of rna4354

>rna4354-protein ID=rna4354-protein|Name=rna4354|organism=Nannochloropsis gaditana|type=polypeptide|length=528bp
MVKPVDLTVPASADAFDVAAAFQGLCDRSNEMSEEKFMATVEALEPWLVP
DIIDFLVAKIAGFGKEREPAISLLTKLDAAFVRRKLPDILQPVINMCTDT
SKKVRELSLKCLEHLVQTNGNSDLDRVIPGLVQALKDPNHTVQAIDDLAS
CVFVQDVEAPALAVIMPIIRRGLRHKQTEIQRKSCVILDNVCRLVDDPKE
LSIAIPEILPLVKYCAENISKPEAREVANRALKTILDHYDEKLVLRKWSV
EEVTAMIKKHGEPTEHIVKCTKNLCDAYHFEKKDWERVYGQKHAELCAKV
LNDCEILASPNTIIFEDTEEGQDLYKGEFSLAYGTLTLLRKTRLHLKRNR
FYGLLGPNNCGKTTLMRAIDHEQIEGFPKKTELKTLFVEHEIEEREVGED
ETGYPIFNTDLSGTDWVVDYCNNVVKVLPAITTEAAAAAMGEMGFGKDRA
ADADMPVTTYSGGWKVKMQLVAATLINADLLMLDEPTGHLDVKNIAWLKG
WLKSFLRGGAPSSPPPTTRSSCRRCART
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mRNA from alignment at CM002463.1:365603..367189-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4354 ID=rna4354|Name=rna4354|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002463.1:365603..367189- (Nannochloropsis gaditana)
ATGGTCAAGCCTGTCGACCTTACTGTCCCCGCCAGTGCCGACGCGTTCGA
CGTGGCGGCAGCCTTCCAGGGCCTCTGCGACCGTTCCAATGAGATGTCCG
AGGAGAAATTCATGGCCACGGTAGAAGCCTTGGAGCCCTGGTTGGTCCCC
GATATCATCGACTTTCTGGTCGCCAAGATCGCGGGCTTCGGGAAGGAGCG
TGAGCCGGCCATCTCCCTCTTGACCAAGCTGGATGCGGCCTTCGTCCGCC
GCAAGCTCCCCGACATCCTCCAGCCCGTCATTAACATGTGCACAGACACC
TCTAAGAAAGTGCGCGAGCTCTCCCTCAAGTGCCTGGAGCACCTGGTGCA
GACGAACGGGAATTCGGACTTGGATAGGGTCATCCCGGGCCTGGTGCAGG
CTCTGAAGGACCCGAACCACACGGTGCAAGCCATCGACGACCTGGCCTCG
TGCGTCTTCGTGCAGGATGTGGAGGCCCCCGCCCTGGCCGTGATCATGCC
CATCATCCGCCGCGGCCTCCGCCACAAGCAGACGGAGATCCAGCGCAAGT
CCTGCGTGATCCTCGACAACGTCTGCCGCCTGGTCGACGACCCCAAGGAG
CTCTCCATCGCCATCCCGGAGATCCTGCCTTTGGTCAAGTACTGCGCCGA
GAACATCTCCAAACCGGAGGCCCGCGAGGTGGCCAACCGGGCGCTCAAGA
CCATCCTCGACCACTACGACGAGAAGCTGGTTTTGCGGAAGTGGAGCGTG
GAGGAGGTGACGGCCATGATCAAGAAGCACGGGGAGCCGACCGAGCACAT
CGTCAAGTGCACCAAGAACCTGTGCGACGCCTACCATTTCGAGAAGAAGG
ACTGGGAGCGCGTCTACGGCCAGAAGCATGCGGAGCTGTGCGCCAAAGTC
CTGAACGACTGCGAGATCTTGGCCAGCCCCAACACAATCATCTTCGAGGA
CACGGAGGAAGGGCAGGACCTGTACAAGGGCGAGTTCTCTCTGGCCTACG
GGACCCTCACCCTCCTGCGCAAGACGCGGCTGCACTTGAAACGCAACCGC
TTCTACGGCCTGCTGGGCCCCAACAACTGCGGGAAGACGACGCTGATGCG
CGCCATCGACCACGAGCAGATCGAGGGCTTCCCCAAGAAGACGGAGCTTA
AGACCCTCTTCGTCGAGCACGAGATCGAGGAGCGGGAGGTGGGCGAGGAC
GAGACCGGGTACCCGATCTTCAACACGGATCTGTCGGGGACGGACTGGGT
GGTGGACTACTGCAACAACGTGGTCAAGGTGCTGCCCGCCATCACCACGG
AGGCGGCGGCGGCGGCCATGGGGGAGATGGGCTTCGGGAAGGACCGCGCG
GCCGATGCCGACATGCCCGTGACCACGTACTCGGGTGGCTGGAAGGTAAA
GATGCAGCTGGTGGCGGCCACGCTTATCAACGCCGATCTGCTCATGCTGG
ACGAGCCCACGGGGCACTTGGACGTGAAGAACATTGCCTGGCTGAAAGGC
TGGCTTAAGTCCTTCTTGCGGGGGGGGGCTCCATCATCACCACCTCCCAC
GACTCGGAGTTCTTGCAGGAGATGTGCACGCACGTGA
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Coding sequence (CDS) from alignment at CM002463.1:365603..367189-

>rna4354 ID=rna4354|Name=rna4354|organism=Nannochloropsis gaditana|type=CDS|length=1587bp|location=Sequence derived from alignment at CM002463.1:365603..367189- (Nannochloropsis gaditana)
ATGGTCAAGCCTGTCGACCTTACTGTCCCCGCCAGTGCCGACGCGTTCGA
CGTGGCGGCAGCCTTCCAGGGCCTCTGCGACCGTTCCAATGAGATGTCCG
AGGAGAAATTCATGGCCACGGTAGAAGCCTTGGAGCCCTGGTTGGTCCCC
GATATCATCGACTTTCTGGTCGCCAAGATCGCGGGCTTCGGGAAGGAGCG
TGAGCCGGCCATCTCCCTCTTGACCAAGCTGGATGCGGCCTTCGTCCGCC
GCAAGCTCCCCGACATCCTCCAGCCCGTCATTAACATGTGCACAGACACC
TCTAAGAAAGTGCGCGAGCTCTCCCTCAAGTGCCTGGAGCACCTGGTGCA
GACGAACGGGAATTCGGACTTGGATAGGGTCATCCCGGGCCTGGTGCAGG
CTCTGAAGGACCCGAACCACACGGTGCAAGCCATCGACGACCTGGCCTCG
TGCGTCTTCGTGCAGGATGTGGAGGCCCCCGCCCTGGCCGTGATCATGCC
CATCATCCGCCGCGGCCTCCGCCACAAGCAGACGGAGATCCAGCGCAAGT
CCTGCGTGATCCTCGACAACGTCTGCCGCCTGGTCGACGACCCCAAGGAG
CTCTCCATCGCCATCCCGGAGATCCTGCCTTTGGTCAAGTACTGCGCCGA
GAACATCTCCAAACCGGAGGCCCGCGAGGTGGCCAACCGGGCGCTCAAGA
CCATCCTCGACCACTACGACGAGAAGCTGGTTTTGCGGAAGTGGAGCGTG
GAGGAGGTGACGGCCATGATCAAGAAGCACGGGGAGCCGACCGAGCACAT
CGTCAAGTGCACCAAGAACCTGTGCGACGCCTACCATTTCGAGAAGAAGG
ACTGGGAGCGCGTCTACGGCCAGAAGCATGCGGAGCTGTGCGCCAAAGTC
CTGAACGACTGCGAGATCTTGGCCAGCCCCAACACAATCATCTTCGAGGA
CACGGAGGAAGGGCAGGACCTGTACAAGGGCGAGTTCTCTCTGGCCTACG
GGACCCTCACCCTCCTGCGCAAGACGCGGCTGCACTTGAAACGCAACCGC
TTCTACGGCCTGCTGGGCCCCAACAACTGCGGGAAGACGACGCTGATGCG
CGCCATCGACCACGAGCAGATCGAGGGCTTCCCCAAGAAGACGGAGCTTA
AGACCCTCTTCGTCGAGCACGAGATCGAGGAGCGGGAGGTGGGCGAGGAC
GAGACCGGGTACCCGATCTTCAACACGGATCTGTCGGGGACGGACTGGGT
GGTGGACTACTGCAACAACGTGGTCAAGGTGCTGCCCGCCATCACCACGG
AGGCGGCGGCGGCGGCCATGGGGGAGATGGGCTTCGGGAAGGACCGCGCG
GCCGATGCCGACATGCCCGTGACCACGTACTCGGGTGGCTGGAAGGTAAA
GATGCAGCTGGTGGCGGCCACGCTTATCAACGCCGATCTGCTCATGCTGG
ACGAGCCCACGGGGCACTTGGACGTGAAGAACATTGCCTGGCTGAAAGGC
TGGCTTAAGTCCTTCTTGCGGGGGGGGGCTCCATCATCACCACCTCCCAC
GACTCGGAGTTCTTGCAGGAGATGTGCACGCACGTGA
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Synonyms
Publications