rna435, rna435 (mRNA) Nannochloropsis gaditana

Overview
Namerna435
Unique Namerna435
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length932
Alignment locationCM002455.1:1077546..1079758 -

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Properties
Property NameValue
Producttrna pseudouridine synthase a
Orig transcript idgnl|cribi|Naga_100003g47.1741.mrna
Orig protein idgnl|cribi|Naga_100003g47.1741
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1077546..1079758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g47gene419Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30224.1cds435Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna435rna435-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna435 ID=rna435|Name=rna435|organism=Nannochloropsis gaditana|type=mRNA|length=932bp
AGTGACATGGCTGTCGAAGGAAGTGCAGACTCGGTCACCTTCTAAACACA
TTTCGCGACCACAGGTAGATTCAGGGTCGACGCAAATGATGAGCCGCTTC
GCCTCTTTCTTTGGCCGTGGCGCCGGGAATGAAGGGGAAAACGAGCAAAC
GCACGCTCCCGCGCCCGCCCCCGCGCCCGTTCCCCACCAACAGCAACCAC
ATCGACACCATAATCAGCAACAAGCGTCACACCGGCAGCCAGCACCTCCG
CCACAAGGGAAGGCTTCTGCTTCTACCGGCAATCGTCCACGCTCTGGGAG
CAGCGGAAACAGTGGGAGCTCCCGGCATAAGACGGGGAAGAGGAGAGGGA
CTTCGAAGACAGGGCCTCCTGCGGGAGGCCTTTCTCCACGCTCAGTGTCT
GCCCTTGCGAAACTGGAAGATTACGCTCACGATGCTGATGCGTTGGAAAA
GCTATTGGCAAGCGTGGAGTTGTGTTTGCAAGATTATCCGCGCACTCCAA
GGGCACGGTTGTTGGAAGCCAAAGATCAAATCGCTCAAATGAATGGAAAT
CTTGAGAAGCTACAATACAACGGCGTCGACTCTATCATAACGGCTGAACT
GGAGAGTGGGAAAGAAAAAGCAAAGGAAAAGCGAAAAGCCTTGAATCAAC
GGTGTGACAGCTTGCGGGAGCGAATATTGCAGAATTCTAGAGACCTGGCA
AAAATGTTGACTGCAGGGGCAGGGAAATAAAGCAGTTGCACAAAAGTTCG
AAACAAATTATAAATTGAAGCACCTTTGTCTACTCTCTTGTGATAATGGA
TAATCTAAACACAAGCCTGGGCAAAGCTCTTGCTCAGGCATCGTGCTCAC
ACATTGCTAGTATCATACGTGTACTTTATTGATTTAGGATAAGCGTATCA
TTCGATATCTCATAAGTACTGCGTACTGTTGT
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protein sequence of rna435

>rna435-protein ID=rna435-protein|Name=rna435|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MGRNAHETECRLKRLHFLALCCLSVIAACRGAMVWHSPCRMSLSGDYTPR
AWWKNPTVPMTRFVARLAYDGTHFNGWQFQVKSRTVQLEVERAINSTLAA
CPDSDLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPAVAAGRFTVQEFET
KLNEGLVSDVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTR
AVADPLHRNYCCAVPRGEALDLRKLAELTSIFEGKHDYQNFANRLQHKRR
MSKRGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWA
VARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF
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mRNA from alignment at CM002455.1:1077546..1079758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna435 ID=rna435|Name=rna435|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp|location=Sequence derived from alignment at CM002455.1:1077546..1079758- (Nannochloropsis gaditana)
TGGGTTTCATCGTTTTTACTGTGGTGTGAGTACAGGATAAAACAGAATAT
GTTTTAGCGCAGTCCTTGCTAACGCAATGTGTGGTTTTCGAGACAGGCTT
TGGACTGACGTTTAACCTCCTGGCTGGACATGGTGGAGGAGCTCCAAGAC
GCCTCCCAAGCACGGGCGCCGATAGTCGACACTTTAAAAACTGCTTATGG
GGCGAAACGCGCATGAAACGGAATGCCGTTTGAAGCGGCTGCATTTTTTG
GCGCTTTGTTGCCTTTCGGTAATCGCGGCTTGTCGGGGGGCGATGGTGTG
GCATAGCCCCTGCAGGATGTCTTTATCAGGAGATTATACACCCAGAGCCT
GGTGGAAAAATCCTACTGTTCCTATGACGCGCTTTGTAGCCCGACTTGCT
TACGATGGGACGCACTTCAATGGTTGGCAATTCCAAGTGAAGAGTCGAAC
GGTGCAACTCGAGGTCGAACGCGCCATCAACTCAACCCTCGCCGCCTGCC
CGGACTCCGACTTGCTTGATAAGGTGTGCATTCGGGCCGTCGCAGCCGGT
CGAACGGATGCTGGTGTCCATGCACGAGGACAGGTCATCCATTTTGACTA
CCCGGCGGTGGCTGCAGGACGGTTTACTGTTCAAGAATTCGAAACGAAGC
TGAACGAGGGACTGGTCTCAGACGTCCGGCTCTGGAACGTGTCGCACGCC
CCTCCTCCCCGAGAGAAAAACCTGGCGGTCCAAGGAGATTGGCACGCTAT
GTACAACAGCCGTTCAAAGCTCTACACTTATCGGTTCTCCACCCGTGCTG
TGGCTGACCCGCTGCACCGGAATTACTGTTGCGCTGTCCCCCGTGGCGAG
GCGCTAGACCTACGCAAATTGGCTGAGTTGACTAGCATTTTCGAGGGAAA
GCATGATTATCAGAATTTCGCTAATCGCTTGCAACACAAGCGGCGAATGA
GCAAAAGGGGGGAAGAATTTTCAACCGTAAGACACGTGCGGTCCGTAGAG
CTAGTTTCGGAGGCGCCAGAGGAATACGCGATCCATGTGCTTTTGGATGG
AGCACTGCAACGAATGGTCAGGAATATGGTGGGAGGACTGTGGGCCGTGG
CACGGGGAGACATGAGTGAAGCGGAGCTGCGAAGGGCATTGGACGGGCCT
TTGTATGCTAAGGGAAGGAGCCCGATCAGAGCAGCACCGGCGCACGGATT
GACGCTGGAATGGGTTTACTACGACGATTTCTGAGGTGATCACGGCAATA
AAAGAGATTCACTCAAGGGTTTACGCGATAAAATTGGAAATTTCAGAGGG
CATGGATCGCTGGTGGGATGGGTGCTCCTTGAGGGGCGCAGAAGGGTGAC
GTCAGGAGGCGGACGATGGAATGTTCGAAAGGATCTACGGCTTATTCTGG
TACACGGACCTTGCTGGACCAAATCTAGAATACAGCGGTGGCATGCCAAA
CTATGGAGTGGGAAGGCAGGTCCTCGCTGCATGGGCTACCTGCCCGACCA
ATTCTCGACAGACGCCTGTCGTCGCCGTCCATGGACACGCCTTGCCTGCC
ATTCGTCTTACCACCACAACACGTACACCGGCCTCAAGAGCGATAGCCCC
CTCAATAATACAGAACAATCATATCTTCCTGTAAGGCGCGGGACTCAGAT
ACCCTCACGAGATCACTGCCAGCGCATTCCCCTGCCGCAAGCTCTCGCAT
AGTAGTTTCCCCGTCCTCGGATCTACAAGGGCATCGCTTCTATAGCGTTA
CAAACGTTGAATGTGTGACATGCCCTAAACACTTTGTCTGAAAGAACTGC
CCATGGATCCTAATAGATAAATTAATTGACACTTGGTCTGAAAGAACTGC
CCATGGATCCTAATAGATACATTAATTGAGTGACGACCCGTCAAGAGCTA
GAGAATACTTCGCTTCGAGCTTGATGCTCCTCAACAACAGTACGCAGTAC
TTATGAGATATCGAATGATACGCTTATCCTAAATCAATAAAGTACACGTA
TGATACTAGCAATGTGTGAGCACGATGCCTGAGCAAGAGCTTTGCCCAGG
CTTGTGTTTAGATTATCCATTATCACAAGAGAGTAGACAAAGGTGCTTCA
ATTTATAATTTGTTTCGAACTTTTGTGCAACTGCTTTATTTCCCTGCCCC
TGCAGTCAACATTTTTGCCAGGTCTCTAGAATTCTGCAATATTCGCTCCC
GCAAGCTGTCACA
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Coding sequence (CDS) from alignment at CM002455.1:1077546..1079758-

>rna435 ID=rna435|Name=rna435|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002455.1:1077546..1079758- (Nannochloropsis gaditana)
ATGGGGCGAAACGCGCATGAAACGGAATGCCGTTTGAAGCGGCTGCATTT
TTTGGCGCTTTGTTGCCTTTCGGTAATCGCGGCTTGTCGGGGGGCGATGG
TGTGGCATAGCCCCTGCAGGATGTCTTTATCAGGAGATTATACACCCAGA
GCCTGGTGGAAAAATCCTACTGTTCCTATGACGCGCTTTGTAGCCCGACT
TGCTTACGATGGGACGCACTTCAATGGTTGGCAATTCCAAGTGAAGAGTC
GAACGGTGCAACTCGAGGTCGAACGCGCCATCAACTCAACCCTCGCCGCC
TGCCCGGACTCCGACTTGCTTGATAAGGTGTGCATTCGGGCCGTCGCAGC
CGGTCGAACGGATGCTGGTGTCCATGCACGAGGACAGGTCATCCATTTTG
ACTACCCGGCGGTGGCTGCAGGACGGTTTACTGTTCAAGAATTCGAAACG
AAGCTGAACGAGGGACTGGTCTCAGACGTCCGGCTCTGGAACGTGTCGCA
CGCCCCTCCTCCCCGAGAGAAAAACCTGGCGGTCCAAGGAGATTGGCACG
CTATGTACAACAGCCGTTCAAAGCTCTACACTTATCGGTTCTCCACCCGT
GCTGTGGCTGACCCGCTGCACCGGAATTACTGTTGCGCTGTCCCCCGTGG
CGAGGCGCTAGACCTACGCAAATTGGCTGAGTTGACTAGCATTTTCGAGG
GAAAGCATGATTATCAGAATTTCGCTAATCGCTTGCAACACAAGCGGCGA
ATGAGCAAAAGGGGGGAAGAATTTTCAACCGTAAGACACGTGCGGTCCGT
AGAGCTAGTTTCGGAGGCGCCAGAGGAATACGCGATCCATGTGCTTTTGG
ATGGAGCACTGCAACGAATGGTCAGGAATATGGTGGGAGGACTGTGGGCC
GTGGCACGGGGAGACATGAGTGAAGCGGAGCTGCGAAGGGCATTGGACGG
GCCTTTGTATGCTAAGGGAAGGAGCCCGATCAGAGCAGCACCGGCGCACG
GATTGACGCTGGAATGGGTTTACTACGACGATTTCTGA
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Synonyms
Publications