rna4341, rna4341 (mRNA) Nannochloropsis gaditana

Overview
Namerna4341
Unique Namerna4341
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length735
Alignment locationCM002463.1:329951..331463 -

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Properties
Property NameValue
Productsalicylate hydroxylase
Orig transcript idgnl|cribi|Naga_100268g3.9467.mrna
Orig protein idgnl|cribi|Naga_100268g3.9467
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:329951..331463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100268g3gene4184Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4341rna4341-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26342.1cds4331Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4341 ID=rna4341|Name=rna4341|organism=Nannochloropsis gaditana|type=mRNA|length=735bp
ATGGCGCTCATCTTTGCGGCATTCCTTTGGCTCGTCTCACTGCGACGGGG
GCAACGGATCGGATCGCCCATTGCCCTTGCAAAGCTTCGCGGAGGGTACC
TCAAGTCAGCGTCGGAAAAAACCTTGGGCACCGGTCTTCGGGACGCGCGC
CTTGTCGGCCAAAGTGACGAATGGCGTGTTGAATTTTTCTTTGTATGGTT
TCCTATATGTCATGACATGTGGACGCGGTACTGTCGCGGTCGTGCACAGA
GGAGGAGAAGGAAGAGGAAAAGGGGTAGTGAGGAAATGGGCTTCTATAAA
TCGTCTTCTTCGTCCACTGAGGGCAGTGTACAGACCACACCTCCCCAGCC
CGGCAACTCCCTGATGTGGGGGGACTCGGCTCTTTATGAGAGGGTCGAAC
ATGTCCAAGAGCAGGAAGAGCCGCAGCAGGATCATACACAGATTCCGTCG
CAAAGCTTCGTTGGGTTGGGCCGGAGCTTATCCTTGTCTGCATCCTCTGT
CCTCAACAGCGTCACCTCCAACGCCAGCAACCTACTTACCGGAGGGAGCA
ACGGTTTTCCCTGCCCGACTCCCAAAGCCGCGCACGCACCGAAGGAAGGA
TCCAGTGTGGGCGAGGAAAAAGACGAGGATGAGGATGATTTCGAAAAGGT
GCGCCGTGAAGACGCATTCCCCCCCCCCCCTCTTTCGGCACGTGGATGGG
TCCAAAGCTGGACTCCGCCCTGGGCTATTTATTGA
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protein sequence of rna4341

>rna4341-protein ID=rna4341-protein|Name=rna4341|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MAISPRKPDVQNDGHEPKIQDVVVVGAGIAGLAVANALRLKGINVTVYER
ASQLDRQRGAGTGLSPNGQRCLHALGFSHEMVLDVSTPIREHILCNEDRV
LVRSDYPWRLYEKYKMPITGTLRGGLVNMMAEPLRKSKSLHCGEAVTNVE
ERPGTGKIIVTLASGKTHETDLVVGADGIHSTLAPLVLGKEMDPPIYTGS
SIFFGVIDNFQKGPQSLPPADTTQLAGLIDHPAAIVQVLGPIKLFLVAGG
AGSEKKLVWKLSYPTQTPPMRKEWALAEGTVRKEVQAYLDERRNSGAKVA
TISVIQDLLDRTSDARLLHFGLFSRKEKAYWHKDRLVLIGDAAHATLPHV
GQGANMALEDAVVLADALEAHDFRHVEAALSSFYARRRERTKRIVESSRV
MGWFLDARTPVGVWLRNAVLVGAMRMDCNYSNFHAPEIPDDTSHGCKGVR
LQDQSGVSR
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mRNA from alignment at CM002463.1:329951..331463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4341 ID=rna4341|Name=rna4341|organism=Nannochloropsis gaditana|type=mRNA|length=1513bp|location=Sequence derived from alignment at CM002463.1:329951..331463- (Nannochloropsis gaditana)
ATGGCTATTTCACCTCGAAAGCCCGACGTCCAGAACGATGGCCATGAACC
CAAAATTCAGGACGTCGTAGTGGTTGGCGCGGGCATCGCGGGGCTTGCGG
TTGCTAATGCCCTTCGACTCAAGGGTATAAATGTCACTGTTTACGAACGT
GCGTCACAATTGGATCGACAACGGGGAGCGGGTACGGGCTTGAGTCCCAA
CGGCCAACGATGTCTGCACGCGCTGGGATTCTCTCATGAGATGGTGTTGG
ACGTGTCCACCCCTATTCGTGAACACATCCTCTGCAACGAAGACCGAGTG
CTGGTCCGCTCTGATTACCCCTGGCGTTTGTATGAAAAATACAAGATGCC
TATCACAGGAACGTTGAGGGGAGGTTTAGTAAATATGATGGCCGAACCCC
TTCGAAAAAGCAAAAGCCTTCATTGCGGCGAAGCTGTAACAAACGTGGAG
GAACGTCCTGGAACGGGGAAAATTATTGTCACATTGGCCTCGGGAAAAAC
CCATGAGACCGATTTGGTGGTAGGAGCAGACGGCATTCACAGCACGTTGG
CCCCCTTGGTGCTGGGCAAGGAGATGGATCCTCCCATATACACAGGCTCT
TCTATTTTTTTTGGTGTCATCGACAACTTTCAGAAAGGCCCGCAATCTTT
GCCACCCGCAGACACGACTCAATTGGCAGGTCTCATTGATCACCCTGCGG
CCATCGTCCAGGTCCTTGGGCCCATCAAACTCTTCCTCGTGGCCGGGGGG
GCAGGCTCGGAGAAAAAATTGGTGTGGAAACTGAGCTATCCCACGCAAAC
GCCTCCGATGCGCAAGGAATGGGCTCTCGCTGAAGGGACAGTCCGCAAGG
AGGTGCAGGCATACCTTGACGAACGTAGGAATTCTGGGGCGAAAGTTGCC
ACCATCTCCGTTATCCAGGACTTGCTGGATCGTACATCCGACGCCCGATT
GCTCCATTTTGGGCTCTTCTCCCGCAAGGAGAAGGCGTACTGGCACAAGG
ATCGCCTGGTTCTAATTGGTGACGCGGCGCATGCTACCTTGCCGCATGTC
GGACAGGGTGCGAACATGGCACTGGAGGACGCCGTGGTCCTGGCCGATGC
CCTGGAGGCGCACGACTTTCGGCACGTGGAAGCCGCCTTGAGTTCTTTTT
ATGCCCGGCGGCGGGAACGAACGAAGCGGATAGTGGAGTCGAGTAGGGTC
ATGGGCTGGTTCTTGGACGCGCGGACTCCAGTGGGCGTGTGGCTGAGGAA
TGCCGTATTGGTGGGGGCCATGCGGATGGATTGGTACCTCAAGTTCGCGG
AAAAGGAAGTGATCGGAGGCTTTGTGCTTGGAAGGGATGATGCCAAGGGG
GATTAAAAGGGCTGAAGGGGCGCGATGTGAGAATTGTCTTGTCTTTCCTT
TCTGTTCCTGCGAAAGCAACTATAGCAATTTCCACGCCCCTGAAATACCA
GATGATACCAGCCATGGCTGCAAAGGAGTGCGCTTGCAGGATCAGTCCGG
CGTCTCACGCTGA
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Coding sequence (CDS) from alignment at CM002463.1:329951..331463-

>rna4341 ID=rna4341|Name=rna4341|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002463.1:329951..331463- (Nannochloropsis gaditana)
CAACTATAGCAATTTCCACGCCCCTGAAATACCAGATGATACCAGCCATG
GCTGCAAAGGAGTGCGCTTGCAGGATCAGTCCGGCGTCTCACGCTGAATG
GCTATTTCACCTCGAAAGCCCGACGTCCAGAACGATGGCCATGAACCCAA
AATTCAGGACGTCGTAGTGGTTGGCGCGGGCATCGCGGGGCTTGCGGTTG
CTAATGCCCTTCGACTCAAGGGTATAAATGTCACTGTTTACGAACGTGCG
TCACAATTGGATCGACAACGGGGAGCGGGTACGGGCTTGAGTCCCAACGG
CCAACGATGTCTGCACGCGCTGGGATTCTCTCATGAGATGGTGTTGGACG
TGTCCACCCCTATTCGTGAACACATCCTCTGCAACGAAGACCGAGTGCTG
GTCCGCTCTGATTACCCCTGGCGTTTGTATGAAAAATACAAGATGCCTAT
CACAGGAACGTTGAGGGGAGGTTTAGTAAATATGATGGCCGAACCCCTTC
GAAAAAGCAAAAGCCTTCATTGCGGCGAAGCTGTAACAAACGTGGAGGAA
CGTCCTGGAACGGGGAAAATTATTGTCACATTGGCCTCGGGAAAAACCCA
TGAGACCGATTTGGTGGTAGGAGCAGACGGCATTCACAGCACGTTGGCCC
CCTTGGTGCTGGGCAAGGAGATGGATCCTCCCATATACACAGGCTCTTCT
ATTTTTTTTGGTGTCATCGACAACTTTCAGAAAGGCCCGCAATCTTTGCC
ACCCGCAGACACGACTCAATTGGCAGGTCTCATTGATCACCCTGCGGCCA
TCGTCCAGGTCCTTGGGCCCATCAAACTCTTCCTCGTGGCCGGGGGGGCA
GGCTCGGAGAAAAAATTGGTGTGGAAACTGAGCTATCCCACGCAAACGCC
TCCGATGCGCAAGGAATGGGCTCTCGCTGAAGGGACAGTCCGCAAGGAGG
TGCAGGCATACCTTGACGAACGTAGGAATTCTGGGGCGAAAGTTGCCACC
ATCTCCGTTATCCAGGACTTGCTGGATCGTACATCCGACGCCCGATTGCT
CCATTTTGGGCTCTTCTCCCGCAAGGAGAAGGCGTACTGGCACAAGGATC
GCCTGGTTCTAATTGGTGACGCGGCGCATGCTACCTTGCCGCATGTCGGA
CAGGGTGCGAACATGGCACTGGAGGACGCCGTGGTCCTGGCCGATGCCCT
GGAGGCGCACGACTTTCGGCACGTGGAAGCCGCCTTGAGTTCTTTTTATG
CCCGGCGGCGGGAACGAACGAAGCGGATAGTGGAGTCGAGTAGGGTCATG
GGCTGGTTCTTGGACGCGCGGACTCCAGTGGGCGTGTGGCTGAGGAATGC
CGTATTGGTGGGGGCCATGCGGATGGATTGCAACTATAGCAATTTCCACG
CCCCTGAAATACCAGATGATACCAGCCATGGCTGCAAAGGAGTGCGCTTG
CAGGATCAGTCCGGCGTCTCACGCTGAATGGCTATTTCACCTCGAAAGCC
CGACGTCCAGAACGATGGCCATGAACCCAAAATTCAGGACGTCGTAGTGG
TTGGCGCGGGCATCGCGGGGCTTGCGGTTGCTAATGCCCTTCGACTCAAG
GGTATAAATGTCACTGTTTACGAACGTGCGTCACAATTGGATCGACAACG
GGGAGCGGGTACGGGCTTGAGTCCCAACGGCCAACGATGTCTGCACGCGC
TGGGATTCTCTCATGAGATGGTGTTGGACGTGTCCACCCCTATTCGTGAA
CACATCCTCTGCAACGAAGACCGAGTGCTGGTCCGCTCTGATTACCCCTG
GCGTTTGTATGAAAAATACAAGATGCCTATCACAGGAACGTTGAGGGGAG
GTTTAGTAAATATGATGGCCGAACCCCTTCGAAAAAGCAAAAGCCTTCAT
TGCGGCGAAGCTGTAACAAACGTGGAGGAACGTCCTGGAACGGGGAAAAT
TATTGTCACATTGGCCTCGGGAAAAACCCATGAGACCGATTTGGTGGTAG
GAGCAGACGGCATTCACAGCACGTTGGCCCCCTTGGTGCTGGGCAAGGAG
ATGGATCCTCCCATATACACAGGCTCTTCTATTTTTTTTGGTGTCATCGA
CAACTTTCAGAAAGGCCCGCAATCTTTGCCACCCGCAGACACGACTCAAT
TGGCAGGTCTCATTGATCACCCTGCGGCCATCGTCCAGGTCCTTGGGCCC
ATCAAACTCTTCCTCGTGGCCGGGGGGGCAGGCTCGGAGAAAAAATTGGT
GTGGAAACTGAGCTATCCCACGCAAACGCCTCCGATGCGCAAGGAATGGG
CTCTCGCTGAAGGGACAGTCCGCAAGGAGGTGCAGGCATACCTTGACGAA
CGTAGGAATTCTGGGGCGAAAGTTGCCACCATCTCCGTTATCCAGGACTT
GCTGGATCGTACATCCGACGCCCGATTGCTCCATTTTGGGCTCTTCTCCC
GCAAGGAGAAGGCGTACTGGCACAAGGATCGCCTGGTTCTAATTGGTGAC
GCGGCGCATGCTACCTTGCCGCATGTCGGACAGGGTGCGAACATGGCACT
GGAGGACGCCGTGGTCCTGGCCGATGCCCTGGAGGCGCACGACTTTCGGC
ACGTGGAAGCCGCCTTGAGTTCTTTTTATGCCCGGCGGCGGGAACGAACG
AAGCGGATAGTGGAGTCGAGTAGGGTCATGGGCTGGTTCTTGGACGCGCG
GACTCCAGTGGGCGTGTGGCTGAGGAATGCCGTATTGGTGGGGGCCATGC
GGATGGATTG
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Synonyms
Publications