rna4338, rna4338 (mRNA) Nannochloropsis gaditana

Overview
Namerna4338
Unique Namerna4338
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length657
Alignment locationCM002463.1:326490..326936 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100268g7.9474.mrna
Orig protein idgnl|cribi|Naga_100268g7.9474
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:326490..326936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100268g7gene4181Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4338rna4338-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26349.1cds4328Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4338 ID=rna4338|Name=rna4338|organism=Nannochloropsis gaditana|type=mRNA|length=657bp
ATGATCCCATCGGCCAATCGCCTTGTGTGCCCAACACCCCTGGCAGCTTT
CTCGGTGTTGACTTGGAACGTGTACTTTGCACCCTTTCAATGGGAGACTC
GCATGAAATACATATTGGACGAGGCATCGCGATTGCAACCGGACGTAATT
TGTTTCCAAGAAGTGGTGCCCGGTTTTCTCACCCTTCTTCAAAGACCAAG
TAACTCGAGATGGAGCTTTTCAGACAGCAACAGCGACACTACTTGGCTCG
AGCACAACGACTATTTACCTTCAACGTTAAACCCTGATGCGCTTACGCCA
TATGGCGTCTTAACTCTCGCAAAGAGAGTGCACAAGCCAGTTTTCGAGAC
GGTTGACCTGCCAACCCGTATGGGCCGTCGCCTCCTCCTGACTCATCTCG
GGTGCATAGGGGAAGGAAAAGCGATGAAGGAAAAGAATGAAAGCTTCCAT
GCGGAGTATAGCAAAGGACACAAGGGATGGACGGTGGGCAATGTACATTT
AGAATCACTCAATTCGGCACCTCTTAGAGCCGAGCAATTGACAACGATAA
GCCAAGCTTTGCGGGAGGCAGAGCAAAGAGGACGACGTGTGATACTCGGC
GGAGACTTCAAGTTAAGCAACAAGACGGGTTGGATATTCCTTATGAACTG
CCCATGA
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protein sequence of rna4338

>rna4338-protein ID=rna4338-protein|Name=rna4338|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MHTLVSILSVTMTPIRDQKSSKTMCSLTGSRFIETCGRFCTKEGPKRGRV
SPSTGQETPSSPCHGKTRRCDTTGCFTGARPSRRREGRTCREDACMHGRR
KRYASWELSRGNPSSFPTTSDCLLDSDAAYVADDREVRYLDHGRQRVH
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mRNA from alignment at CM002463.1:326490..326936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4338 ID=rna4338|Name=rna4338|organism=Nannochloropsis gaditana|type=mRNA|length=447bp|location=Sequence derived from alignment at CM002463.1:326490..326936+ (Nannochloropsis gaditana)
atgcATACCCTAGTTTCGATTCTGAGCGTAACTATGACGCCGATACGGGA
CCAAAAATCCTCGAAAACGATGTGCTCGCTGACAGGCTCCCGTTTTATCG
AGACTTGTGGCCGATTTTGCACAAAGGAAGGGcccaagagagggagggtt
tCACCTTCGACGGGACAAGAAACACCCTCATCGCCATGCCACGGAAAGAC
CCGCAGATGCGATACGACCGGGTGCTTTACAGGGGCACGGCCATcccgac
ggagggagggaaggacatgcCGGGAGGATGCCTGCATGCatgggaggcgg
aagagatATGCCTCGTGGGAACTGAGTCGAGGGaatccctcttcctttcc
gacCACTTCGGATTGCTTGCTAGATTCCGACGCAGCCTATGTGGCCGATG
ACCGCGAAGTTCGCTATCTTGACCACGGACGACAGCGAGTCCATTAG
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Coding sequence (CDS) from alignment at CM002463.1:326490..326936+

>rna4338 ID=rna4338|Name=rna4338|organism=Nannochloropsis gaditana|type=CDS|length=447bp|location=Sequence derived from alignment at CM002463.1:326490..326936+ (Nannochloropsis gaditana)
atgcATACCCTAGTTTCGATTCTGAGCGTAACTATGACGCCGATACGGGA
CCAAAAATCCTCGAAAACGATGTGCTCGCTGACAGGCTCCCGTTTTATCG
AGACTTGTGGCCGATTTTGCACAAAGGAAGGGcccaagagagggagggtt
tCACCTTCGACGGGACAAGAAACACCCTCATCGCCATGCCACGGAAAGAC
CCGCAGATGCGATACGACCGGGTGCTTTACAGGGGCACGGCCATcccgac
ggagggagggaaggacatgcCGGGAGGATGCCTGCATGCatgggaggcgg
aagagatATGCCTCGTGGGAACTGAGTCGAGGGaatccctcttcctttcc
gacCACTTCGGATTGCTTGCTAGATTCCGACGCAGCCTATGTGGCCGATG
ACCGCGAAGTTCGCTATCTTGACCACGGACGACAGCGAGTCCATTAG
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Synonyms
Publications