rna4332, rna4332 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4332
Unique Name	rna4332
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2503
Alignment location	CM002463.1:317130..318785 +

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Properties


Property Name	Value
Product	vacuolar atpase subunit dva41
Orig transcript id	gnl\|cribi\|Naga_100031g1.2234.mrna
Orig protein id	gnl\|cribi\|Naga_100031g1.2234
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:317130..318785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g1	gene4175	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4332	rna4332-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26351.1	cds4322	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:317130..318785+
coding sequence from alignment at CM002463.1:317130..318785+

mRNA sequence

>rna4332 ID=rna4332|Name=rna4332|organism=Nannochloropsis gaditana|type=mRNA|length=2503bp
CTTCGGTGAACCGATCGTATTTCCAACCTGAACAAAATGCCGGACAATCC
TTACGACGCGTGCTCACACACACCAAGACAGGTGATAAATTCGTCCTTGT
ATCCAAGCGAGTGCTGGCGGGACGGTGCATTCACATCGGGTGCGTTGGAA
GGATCCCTTTGAGGAGTATAGCAGCAGACGCACCTTCACGCTAGCCTCCC
GTGTAGCCGAAGCATCTTGCTCGACATGCACGCGGACCAAATCCTGACCA
TCAGGACTCCTCCACCGATTAATGAGGTGCGACGACAGCCAACTTCTCAT
CTCCGAGCCCTCGTGCTCATCATGGCGTCGTTTCTCACAGTTGGTAAGGG
ATTTTTCCAGCAATCACGTCTAATATCTGTGAATTTTTCTTAGCTGGAAC
TCCGAAGTGCTTTTGAAATTAACATATAAAGCGAGCAATTCCACTTAAGA
TCATCCCTAACATTGACTTTCCCGCTCCACTTGATTTTTCCATCGCGTGC
GCCTTCTCCAGGGAGCTACTACGTTTACGACACGCCCTCGTCCCTCTACG
CCCAAATCCAAGAGCACTTCCTGTTCAACAACAACGGTTTCACCTCCCAA
GCTGCCACATTCCAGCTGTACTTCAACCTCCTCTATTCCGTATACTCGGT
CCCCAACATCCTCCTGCCCTTCCTGGGAGGCCACCTGGTCGACACGGTGG
GGATGCGTGCCTGCATTGTGGTCTTCTCCCTCCTCGTCCTCCTCGGCCAA
CTCATCACCGCCCTGGGCATCACCGTCCACTCCATGGGCCTCATGCTCCT
GGGCCGCCTCATCTTCGGCCTGGGAGGAGAGTGCCTGGTCGTGGGGCAGT
CGGCCTTCATCTCCGCCTGGTTCCACAGCCGGGAGGTTGCCTTCGCCCTG
GGCTTCACCCTCTCCGTGTCCCGCTTTGGGAGCGTCTTGAACGACTGGGG
CAGCCCCTTTATCGCTGAAAAGGCGAACGTGGTGACTGCTTTCTGGTTCG
GCGCCCTCCTTTGCCTCGCCTCCACTATCACCGCCTTCCTCCTCGCCTGC
ATCGACCATAATCATCGGTCTCGGCACCACGGCCGCCCCGACCCCGCCGT
CCTTCCCCCCACAGCACCCACCTCTCTCACCTCGGCCGGCATGAAGAGCC
CCCGTCCCGACGGTCCCGCCCTGACCCCATCCCCCACCTCCGGGTCGCAT
CCCACGGAGACCGAGCACGCGGGCTTGATCGGCAGCTTGGGCCACCGAGG
CACCTACTTCGAGACGCCGCACCCCTCCTTCTACGGCCCCCCGCCCCAGC
ACACGGTCCGCTCTTCCTCCTCCTCGCGCCTGGCGCCTCGGGAGAGGGCC
TGGGAGGAAGACCGAGAGGAAGGACCAGTGGCCTCAGCGCCGGCCGCCAC
GACCAGCACCCTCGTCCAGGGGGGCCAGTTTCCGCACGAGGCCTTGCGGG
CACGCCTGGAGCATTTGGCCCAGTTGGATGCGGCCGTGGACGCGATCGAC
GAGGACCACCTCTGGCATTTGATGGGCTTCGACACCATGTTTTGGATTTT
GGCCGGCGTCTGCGCGCTCTGTTACGGGGCGATCATGCCTTTTAACAACG
TGGCCCAAGTCTACCTTTTGAAATACTACCTGCCCATCCACACGCCCCCG
CCTGAAGGCGTGGATTGCTCCTTCCGCCCTGTCCTGCCCGAGTGGGAGAA
ATATTGCGCCGAGGTCGAGCACGTGGAGGGCCTTTCCGGGAGGTTGCAAA
GCGTGCCCTTCATCATCGCCGGTCTGCTCACGCCCTTGATCGGCATCGTT
ATCGACCGCTTCGGCTTTCGGACCCTCTACATGCTCTTGGGCCCTCTCCT
CCTCCTTGCCACCCACTTTATCCTCCTTGTCGGGGGAACCTCCCCTGTGG
TGCCCCTGGCGGGACTGGGCTTGGCCTATTCCATCATCGCCGCGGTCATA
TGGCCCTCCGTTCCTCTCACGGTACACGCAAGCGAGAGCTCCCGGAGATG
CGGCACGGCCTTTGGCATTTTGACCGTGTTCCAAAACCTGTCCATGGCGC
TGTTCCCCATGGCGGTGGCGGCGCTGTCGAACGTAAAGCACGACTACGTG
ACGACCGAATACTTTTTCATCGCCGTGTCCGTGACCGGCGTCATCGTAGC
AGTGTGTTTGATGGTGGAGGATGAGAAACACGGGGCGGTGCTGAGAAAAT
ACGTGGTGGACGGGGAGGAGACTAATCCTTACCACCCACTACACCCGTTC
CACCATGGCCACGCTCCCCCGCACCTGGGAGGGGAGGTGGTGCCTGCACG
GTGTGAAAGAGAGGAGAGCAACGAGTCCAAAGCGAACGGGAATGAGGAAA
ACCGACGCTTAACGGCACCTAAAAGGCCGTTTCGGGATTATAGCACCATG
AGTGTTTGAAAATGTGGGGTGTACGGAAATGTGAAGTGAGCAGGCTTGTC
GAAATGAAGCAAATTTCACTGACGAAAAGAACCATTCGAAAGTAGATCTA
TTT

protein sequence of rna4332

>rna4332-protein ID=rna4332-protein|Name=rna4332|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MSVATDVMDAGGIGTFNLEHGFPEAVVRGFRSGLLTDYDYHHLTQCETLE
DMKMNLQETDYDQFMSNEQHITPASFREKALQKLVQEMDFLRAHAVEPLA
TFLDYISYEFMIDNVMLLLKGTLSGRSANELIKQCNPLGLFKESTMRSIP
TFEASPKGYADLYQTVLIDTPVGPYFSQYLEDSAEHLGDASEMRNILEEV
QIEVIKNSLHKLYLEDFYRVTQAIGGETANFMGHLIMLRADRMAINITVN
RYFFPPCSPSSPAGSPSPPQRSPPSLPPSSLPPSLPPF

mRNA from alignment at CM002463.1:317130..318785+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4332 ID=rna4332|Name=rna4332|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp|location=Sequence derived from alignment at CM002463.1:317130..318785+ (Nannochloropsis gaditana)
TCTTTCCGTTTGGAGAGATTAAGAGGGGTTTCGTGCTCGAGCCTCGTGGC
GGTTGGTAAGATTCCCTACCGCTCCCATAGTTTTTAACAGGGGGACAGGA
ATGTTTGTCGCAGTCTCGTATATCAAGCTCATACTTCTCTCTGTGAATTT
CTTTGTGCAGGCCTCCCTTGGTGTAGAGGCAGCTGTAGCGGCATCCGCAT
TataaggaggagaggtgCTTGTGGGGTTTGTCCATTCCGTGTGAGCGAAC
GGATTGACGAACAACAGGAATTGAGAAGCGGAGAAATTCCAAGCAACTAT
TAGCAAGAATTTAAAGAAAACATCATTCGGATATATACACACGGTCAGAC
AGTATGTCTGTAGCAACAGACGTGATGGATGCTGGAGGCATCGGCACATT
CAACTTGGAGCATGGGTTTCCGGAGGCCGTCGTGCGGGGGTTCCGCTCGG
GCCTTTTGACGGATTACGATTACCACCATCTGACGCAGGTACATTGGGGG
AGCCGTCTTattgaggaggatgtgggTGGGAGTAGCGGCCCAAAACAGGC
GCCGTGTCGTATGTCTGAGAGCACTGGAGAATTGCGACAGCGGCGACGCG
TGTCGGGGCTTGGGACAGGGCATGCTCTGGTGCCGTGGCAAAGGGGCTGA
CACTGGAGGGTGCATCAGAGTGTAGAAGTGCAACAGCAGTCGATCTTGTC
TgatttcccccttttcttctcctcctgcactcCCCAGTGCGAGACcctgg
aggacatgaagaTGAACCTGCAGGAGACGGACTACGACCAGTTCATGTCG
AACGAGCAGCACATcactcccgcctccttccgcgAGAAGGCCTTGCAGAA
GTTGGTGCAGGAAATGGATTTCTTGCGCGCGCACGCGGTGGAGCCATTGG
CCACGTTTCTGGACTACATCTCCTACGAATTCATGATCGATAACGTGATG
CTTCTGTTGAAGGGGACCTTGAGCGGTCGAAGCGCGAACGAGCTCATCAA
GCAGTGCAACCCCCTGGGGCTTTTCAAAGAGAGCACGATGCGTTCCATCC
CCACATTCGAGGCCTCGCCCAAGGGGTACGCGGACCTGTACCAGACGGTC
CTGATCGACACCCCCGTGGGCCCCTACTTCTCCCAGTATCTGGAGGACAG
CGCAGAGCATCTGGGGGATGCCTCGGAGATGAGGAACATTCTGGAAGAAG
TTCAGATTGAGGTAGGTGGAAAGGCGGGCGTGACGGGGGCTGGGGCGTGG
TCGGGACCGACgacggcggagaggaagctCTGGGGGTGTGCCATGGGGCA
TGGGACGGGGTTGGGGAGCCTTCAGTAGGGGGCCGATCCGATCCTCCCGT
GTCCCTTTCGGTGAAGATGACACCCGCCGTTCCCCCCTTGCATCCCACCA
GGTCATCAAGAACTCCCTCCACAAGCTCTATCTCGAGGACTTCTACAGGG
TCACTCAGGCCATAGGGGGGGAGACCGCCAACTTTATGGGCCACCTGATC
ATGCTGCGCGCGGACCGGATGGCCATCAACATCACTGTGAACAGgtattt
cttccctccctgctccccgtcctcccccgcgggctcgccttctcctcctc
aacgatcccctccctcccttcctccctcttccctccctccctccctccct
cccttt

Coding sequence (CDS) from alignment at CM002463.1:317130..318785+

>rna4332 ID=rna4332|Name=rna4332|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002463.1:317130..318785+ (Nannochloropsis gaditana)
ATGTCTGTAGCAACAGACGTGATGGATGCTGGAGGCATCGGCACATTCAA
CTTGGAGCATGGGTTTCCGGAGGCCGTCGTGCGGGGGTTCCGCTCGGGCC
TTTTGACGGATTACGATTACCACCATCTGACGCAGTGCGAGACcctggag
gacatgaagaTGAACCTGCAGGAGACGGACTACGACCAGTTCATGTCGAA
CGAGCAGCACATcactcccgcctccttccgcgAGAAGGCCTTGCAGAAGT
TGGTGCAGGAAATGGATTTCTTGCGCGCGCACGCGGTGGAGCCATTGGCC
ACGTTTCTGGACTACATCTCCTACGAATTCATGATCGATAACGTGATGCT
TCTGTTGAAGGGGACCTTGAGCGGTCGAAGCGCGAACGAGCTCATCAAGC
AGTGCAACCCCCTGGGGCTTTTCAAAGAGAGCACGATGCGTTCCATCCCC
ACATTCGAGGCCTCGCCCAAGGGGTACGCGGACCTGTACCAGACGGTCCT
GATCGACACCCCCGTGGGCCCCTACTTCTCCCAGTATCTGGAGGACAGCG
CAGAGCATCTGGGGGATGCCTCGGAGATGAGGAACATTCTGGAAGAAGTT
CAGATTGAGGTCATCAAGAACTCCCTCCACAAGCTCTATCTCGAGGACTT
CTACAGGGTCACTCAGGCCATAGGGGGGGAGACCGCCAACTTTATGGGCC
ACCTGATCATGCTGCGCGCGGACCGGATGGCCATCAACATCACTGTGAAC
AGgtatttcttccctccctgctccccgtcctcccccgcgggctcgccttc
tcctcctcaacgatcccctccctcccttcctccctcttccctccctccct
ccctccctccctttATGTCTGTAGCAACAGACGTGATGGATGCTGGAGGC
ATCGGCACATTCAACTTGGAGCATGGGTTTCCGGAGGCCGTCGTGCGGGG
GTTCCGCTCGGGCCTTTTGACGGATTACGATTACCACCATCTGACGCAGT
GCGAGACcctggaggacatgaagaTGAACCTGCAGGAGACGGACTACGAC
CAGTTCATGTCGAACGAGCAGCACATcactcccgcctccttccgcgAGAA
GGCCTTGCAGAAGTTGGTGCAGGAAATGGATTTCTTGCGCGCGCACGCGG
TGGAGCCATTGGCCACGTTTCTGGACTACATCTCCTACGAATTCATGATC
GATAACGTGATGCTTCTGTTGAAGGGGACCTTGAGCGGTCGAAGCGCGAA
CGAGCTCATCAAGCAGTGCAACCCCCTGGGGCTTTTCAAAGAGAGCACGA
TGCGTTCCATCCCCACATTCGAGGCCTCGCCCAAGGGGTACGCGGACCTG
TACCAGACGGTCCTGATCGACACCCCCGTGGGCCCCTACTTCTCCCAGTA
TCTGGAGGACAGCGCAGAGCATCTGGGGGATGCCTCGGAGATGAGGAACA
TTCTGGAAGAAGTTCAGATTGAGGTCATCAAGAACTCCCTCCACAAGCTC
TATCTCGAGGACTTCTACAGGGTCACTCAGGCCATAGGGGGGGAGACCGC
CAACTTTATGGGCCACCTGATCATGCTGCGCGCGGACCGGATGGCCATCA
ACATCACTGTGAACAGgtatttcttccctccctgctccccgtcctccccc
gcgggctcgccttctcctcctcaacgatcccctccctcccttcctccctc
ttccctccctccctccctccctccctttATGTCTGTAGCAACAGACGTGA
TGGATGCTGGAGGCATCGGCACATTCAACTTGGAGCATGGGTTTCCGGAG
GCCGTCGTGCGGGGGTTCCGCTCGGGCCTTTTGACGGATTACGATTACCA
CCATCTGACGCAGTGCGAGACcctggaggacatgaagaTGAACCTGCAGG
AGACGGACTACGACCAGTTCATGTCGAACGAGCAGCACATcactcccgcc
tccttccgcgAGAAGGCCTTGCAGAAGTTGGTGCAGGAAATGGATTTCTT
GCGCGCGCACGCGGTGGAGCCATTGGCCACGTTTCTGGACTACATCTCCT
ACGAATTCATGATCGATAACGTGATGCTTCTGTTGAAGGGGACCTTGAGC
GGTCGAAGCGCGAACGAGCTCATCAAGCAGTGCAACCCCCTGGGGCTTTT
CAAAGAGAGCACGATGCGTTCCATCCCCACATTCGAGGCCTCGCCCAAGG
GGTACGCGGACCTGTACCAGACGGTCCTGATCGACACCCCCGTGGGCCCC
TACTTCTCCCAGTATCTGGAGGACAGCGCAGAGCATCTGGGGGATGCCTC
GGAGATGAGGAACATTCTGGAAGAAGTTCAGATTGAGGTCATCAAGAACT
CCCTCCACAAGCTCTATCTCGAGGACTTCTACAGGGTCACTCAGGCCATA
GGGGGGGAGACCGCCAACTTTATGGGCCACCTGATCATGCTGCGCGCGGA
CCGGATGGCCATCAACATCACTGTGAACAGgtatttcttccctccctgct
ccccgtcctcccccgcgggctcgccttctcctcctcaacgatcccctccc
tcccttcctccctcttccctccctccctccctccctcccttt

Synonyms

Publications