rna4324, rna4324 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4324
Unique Name	rna4324
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1781
Alignment location	CM002463.1:301056..302721 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100031g10.2265.mrna
Orig protein id	gnl\|cribi\|Naga_100031g10.2265
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:301056..302721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g10	gene4167	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4324	rna4324-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26382.1	cds4314	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:301056..302721+
coding sequence from alignment at CM002463.1:301056..302721+

mRNA sequence

>rna4324 ID=rna4324|Name=rna4324|organism=Nannochloropsis gaditana|type=mRNA|length=1781bp
TCTGGCTTGTACTTGTGAAGCGTAGACGCAGTTCGGTGGTGTAAATTCTA
TAATTGTGTGTCATCAACCATAGAAAGTGGTTGCGTTTCATGGACTGCAA
AGAAGGCGTTTTGGCTTTGGCCCTACCTTTCACGATTTTCACCTTATCTC
TTCAATTTCCAACCCTGGACATTATCAATTTAGATGCTTTCGTCCTGCAC
GTGGGCGAGTGACGTTGGCCATGTACAGGTTTCATGTGAAAGCAAGAAAG
AGTACATGCATGGACGTGCGCGTAAGACGCGCGTCCGAGCACTTGGACGG
CGTGATGCGCCCCAATACGAGACAGCTTTGCGCCTGCTCCTTGCGGTAGC
TCAACCCGCCTACGCCACGTCGTCACACGCGCTAAACTCGCTCTCTTCAT
CGTGTCCGATCATGACCAACCTCCCCTACTCGGATACTGTCCAAAATTGT
GAAAGTACGGCGGCATGGTTGGAAGGCCGTCCTGGGCTTGATCCAGCGGA
AGGGCACCTATGCAATCAAGAACGCGCTCGCAGGAAGCGACAGCAAGTCG
CGAACTTGGTACAAGCGTGTCATACGTATATAAAATATCTCCTGGCAACG
TGGGAACGAAACTCAACCGGCAAGCCAATAAGGGTCATCGAATTTTGTTG
CGGCAGCGGCCATGTGGCGCTTCCTTTGGCTGCCATGTACCCCCCCGTGC
AATTCATCCTCATCGACAATCGGCCTGCCTCTGTCCATCAAGCCCGTGCG
CGGGCGGTACGTGCAGGATTGCAGAATGTGACATGCCGTTGCGAGGATCT
CCACCAGTTTTCATTGGGCGAGGAGTTTGATTTGGGCATTGCCCTTCACG
CTTGTGGGCCATTGACAGACTTGGTAATGGACCTGTGCGTGCAACAACGG
GCAGCTTACGTGCTTTGCCCCTGTTGCATTGGGAAAGTTCAGTCTAGCCC
CCTAGAGTACCCTCGTTCGTCCCGTTTTCGAGCCCTTAACTTGGACCGCC
GGCACTATGAGGCTTTGGCTAGCGCAGCAGACATGAGCGTGCGGCAATTT
TGCTTCAGTCCAAGGATTCAGGAGGAAAGATTGAAAGACTGTGCGTTCGC
AGACGACGAGGAGATTTCTCGGATGGAGCGGCAGCAACAGCACCGACGAC
GACGGTTGTGCAAATCTTTCGTAGAAATGGATAGAGGCTTTCGGGCCCAA
GAAGCGGGGTATTCGACGCGGTTGATGCTCCTTACTCCTCGAGAATGCAC
ACCGAAAAATGACATGCTTTGTGGCCATCCTGAAGAATGGCAGAAACTTC
CTTTAGATGCGTTGGAAAACATAGGGGCTGAGGTAGGTCACGAGCACGTC
CATCTCGTCGACGGCGATGATGCGTGTGCCTTCGACGCCTGGTTCGGGGA
CACCGTTGGGGAAAACGTGGAAGATTTAGCGTCTGGCGACGAAAGCGGCT
GAGGAAATGGAAATACTGTTCGAGGTCTCGTAATTCTAGGTGTATTCTTC
TTTTTGTTGTGTGGCCCATACTTGCATGTAAATTCATGAGTGTACAATTG
CGTAATTATCACTGTACTATTGGCAGGATTTATACATGTTTGCGAAGCAT
ATGCCTCCACTAGGCCGCTTTTTCTTATTTGTCGAAAGCAATGCAATTGA
TTTATATCATAGGTTAAAGTATCGCAAAGCATGAATCTACAATTTTCTTG
TGTCCCACACAATTATCAGTATAATTACATGGATGCCGAATAAAATATCT
TATTCAGCAAGTGCTACTTCTTACAGCCCCA

protein sequence of rna4324

>rna4324-protein ID=rna4324-protein|Name=rna4324|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MSVPARLGYEIVSSGKPGVKKTVVFLHGILGSLKNWKQPARRLIGMFPHY
QALLVDHRGHGQSEPGRPPHTLAACAFDVRALLQSLHLQVDVLCGHSFGG
KIALEVVKQGLEENSRTGRSQGAVFTELPRQTWVFDSLPTPVDRHKAIGE
NSVWDVIEKLGQVPLPQRSKEKLVSFLITEKQIPPAIAHWLMTSLKNVPP
DSTHPASEIEGRPGSRGGYVWAFDLDVIRALFEAYTCACYYDVMSSPGLS
LHDARIDFIRAGKNEAWTPDVLARFGALQAGGQGQVKLHCLEQAGHWIHV
DDLEGVLRLLAPTFLPPL

mRNA from alignment at CM002463.1:301056..302721+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4324 ID=rna4324|Name=rna4324|organism=Nannochloropsis gaditana|type=mRNA|length=1666bp|location=Sequence derived from alignment at CM002463.1:301056..302721+ (Nannochloropsis gaditana)
CACAGGATATGTCCgttcccgcccgccttggcTACGAAATAGTGTCCAGC
GGTAAACCAGGCGTGAAAAAAACAGTGGTTTTCCTCCGTAAGTCTGTTGA
ATTCATATCCTGGCCCTACACGCTTCTTGCACAACCCACCTTGCCACGCG
CTGCTTAAGCACTTCATTTTCTCCATAAACACTCACAGATGGTATCCTAG
GTAGTCTTAAGAACTGGAAGCAGCCTGCGCGCCGCCTCATTGGCATGTTT
CCCCATTATCAAGCGTTGCTTGTCGATCATCGAGGACATGGGCAATCCGA
ACCCGGTCGACCTCCCCACACCTTAGCAGCATGCGCTTTTGATGTACGAG
CCTTGCTGCAGTCCCTTCATTTGCAAGTAGATGTTCTATGTGGGCACTCA
TTCGGCGGAAAAATTGCGCTTGAAGTTGTGAAGCAAGGTCTTGAAGAAAA
CAGCAGGACGGGCAGGTCCCAAGGAGCCGTATTTACTGAGCTACCAAGAC
AGACGTGGGTGTTCGACTCCTTGCCCACACCGGTCGATCGGCATAAAGCC
ATCGGGGAAAACTCGGTGTGGGATGTGATCGAGAAGCTTGGCCAAGTCCC
CTTGCCCCAGCGCAGTAAGGAAAAgctcgtttccttcctcatcactgAGA
AGCAGATTCCACCCGCCATTGCCCACTGGTTGATGACGAGCCTTAAAAAC
GTGCCCCCTGATTCGACCCACCCAGCAAGTGAAATCGAGGGACGACCCGG
ATCACGAGGGGGCTACGTGTGGGCTTTCGATTTGGACGTGATTCGGGCCC
TTTTCGAGGCCTACACGTGTGCGTGCTACTATGACGTCATGAGCTCAccc
ggcctctccctccacgatGCTCGCATTGACTTTATTCGAGCGGGAAAAAA
CGAAGCGTGGACACCGGATGTACTTGGTAAGTTAAATGGACAACCTCTCG
AGAACCGATCTCCCATGAATCTCTCATAAATGATTCCAAGGACCGCTAAA
TGAATACACCACGGTCGGAGCAGAATGCTTGCGGTGTCAATCTTCacatt
ccctctctttcatcctctcctcagCACGGTTCGGGGCCCTTCAAGCAggg
ggacagggacaggTCAAATTGCATTGCCTGGAGCAAGCAGGGCATTGGAT
CCACGTGGATGATCTGGAAGGCGTGCTCCGACTTTTGGCCCCGACCTTCC
TGCCACCCCtttgagaagaaggaaaggagcaaTGCCTTCAGGTCCAGATA
GCACCGAAAAGAAATTTCTGTGGAATCAGGGTGACCTAGGCTATGGATGC
CAGCCTTGGGTTCCGACATGCTTTAAAGCCTGAGTTATCTAGTCCTGACA
AGGAGACTCAGCCCAGGAATGTAGGAATAGGAAGGTGCTTTTTCATGCTT
GGAAGTGCCCGTATATGGCACTAATGCGAAGACGCCACACACCAGGCGTA
AGAGTtgcctttctctctccgCACTTTCCaccaggacgagggaagcAAAT
AAAGAAAAAGGGTGTAAAGAAATTGAGACAGGCACCGAGCGGCGACCGCC
CGGTCACACGGCAGCGCCTGATATTGCTACAGTCCATCAAGCTTAGGTCG
GCGCCTCACACGACCAGATTTCCCGCTGGAAGTCTTGCTCACATTATCTC
AATGAAGTGACCTGCT

Coding sequence (CDS) from alignment at CM002463.1:301056..302721+

>rna4324 ID=rna4324|Name=rna4324|organism=Nannochloropsis gaditana|type=CDS|length=2871bp|location=Sequence derived from alignment at CM002463.1:301056..302721+ (Nannochloropsis gaditana)
ATGTCCgttcccgcccgccttggcTACGAAATAGTGTCCAGCGGTAAACC
AGGCGTGAAAAAAACAGTGGTTTTCCTCCATGGTATCCTAGGTAGTCTTA
AGAACTGGAAGCAGCCTGCGCGCCGCCTCATTGGCATGTTTCCCCATTAT
CAAGCGTTGCTTGTCGATCATCGAGGACATGGGCAATCCGAACCCGGTCG
ACCTCCCCACACCTTAGCAGCATGCGCTTTTGATGTACGAGCCTTGCTGC
AGTCCCTTCATTTGCAAGTAGATGTTCTATGTGGGCACTCATTCGGCGGA
AAAATTGCGCTTGAAGTTGTGAAGCAAGGTCTTGAAGAAAACAGCAGGAC
GGGCAGGTCCCAAGGAGCCGTATTTACTGAGCTACCAAGACAGACGTGGG
TGTTCGACTCCTTGCCCACACCGGTCGATCGGCATAAAGCCATCGGGGAA
AACTCGGTGTGGGATGTGATCGAGAAGCTTGGCCAAGTCCCCTTGCCCCA
GCGCAGTAAGGAAAAgctcgtttccttcctcatcactgAGAAGCAGATTC
CACCCGCCATTGCCCACTGGTTGATGACGAGCCTTAAAAACGTGCCCCCT
GATTCGACCCACCCAGCAAGTGAAATCGAGGGACGACCCGGATCACGAGG
GGGCTACGTGTGGGCTTTCGATTTGGACGTGATTCGGGCCCTTTTCGAGG
CCTACACGTGTGCGTGCTACTATGACGTCATGAGCTCAcccggcctctcc
ctccacgatGCTCGCATTGACTTTATTCGAGCGGGAAAAAACGAAGCGTG
GACACCGGATGTACTTGCACGGTTCGGGGCCCTTCAAGCAgggggacagg
gacaggTCAAATTGCATTGCCTGGAGCAAGCAGGGCATTGGATCCACGTG
GATGATCTGGAAGGCGTGCTCCGACTTTTGGCCCCGACCTTCCTGCCACC
CCtttgaATGTCCgttcccgcccgccttggcTACGAAATAGTGTCCAGCG
GTAAACCAGGCGTGAAAAAAACAGTGGTTTTCCTCCATGGTATCCTAGGT
AGTCTTAAGAACTGGAAGCAGCCTGCGCGCCGCCTCATTGGCATGTTTCC
CCATTATCAAGCGTTGCTTGTCGATCATCGAGGACATGGGCAATCCGAAC
CCGGTCGACCTCCCCACACCTTAGCAGCATGCGCTTTTGATGTACGAGCC
TTGCTGCAGTCCCTTCATTTGCAAGTAGATGTTCTATGTGGGCACTCATT
CGGCGGAAAAATTGCGCTTGAAGTTGTGAAGCAAGGTCTTGAAGAAAACA
GCAGGACGGGCAGGTCCCAAGGAGCCGTATTTACTGAGCTACCAAGACAG
ACGTGGGTGTTCGACTCCTTGCCCACACCGGTCGATCGGCATAAAGCCAT
CGGGGAAAACTCGGTGTGGGATGTGATCGAGAAGCTTGGCCAAGTCCCCT
TGCCCCAGCGCAGTAAGGAAAAgctcgtttccttcctcatcactgAGAAG
CAGATTCCACCCGCCATTGCCCACTGGTTGATGACGAGCCTTAAAAACGT
GCCCCCTGATTCGACCCACCCAGCAAGTGAAATCGAGGGACGACCCGGAT
CACGAGGGGGCTACGTGTGGGCTTTCGATTTGGACGTGATTCGGGCCCTT
TTCGAGGCCTACACGTGTGCGTGCTACTATGACGTCATGAGCTCAcccgg
cctctccctccacgatGCTCGCATTGACTTTATTCGAGCGGGAAAAAACG
AAGCGTGGACACCGGATGTACTTGCACGGTTCGGGGCCCTTCAAGCAggg
ggacagggacaggTCAAATTGCATTGCCTGGAGCAAGCAGGGCATTGGAT
CCACGTGGATGATCTGGAAGGCGTGCTCCGACTTTTGGCCCCGACCTTCC
TGCCACCCCtttgaATGTCCgttcccgcccgccttggcTACGAAATAGTG
TCCAGCGGTAAACCAGGCGTGAAAAAAACAGTGGTTTTCCTCCATGGTAT
CCTAGGTAGTCTTAAGAACTGGAAGCAGCCTGCGCGCCGCCTCATTGGCA
TGTTTCCCCATTATCAAGCGTTGCTTGTCGATCATCGAGGACATGGGCAA
TCCGAACCCGGTCGACCTCCCCACACCTTAGCAGCATGCGCTTTTGATGT
ACGAGCCTTGCTGCAGTCCCTTCATTTGCAAGTAGATGTTCTATGTGGGC
ACTCATTCGGCGGAAAAATTGCGCTTGAAGTTGTGAAGCAAGGTCTTGAA
GAAAACAGCAGGACGGGCAGGTCCCAAGGAGCCGTATTTACTGAGCTACC
AAGACAGACGTGGGTGTTCGACTCCTTGCCCACACCGGTCGATCGGCATA
AAGCCATCGGGGAAAACTCGGTGTGGGATGTGATCGAGAAGCTTGGCCAA
GTCCCCTTGCCCCAGCGCAGTAAGGAAAAgctcgtttccttcctcatcac
tgAGAAGCAGATTCCACCCGCCATTGCCCACTGGTTGATGACGAGCCTTA
AAAACGTGCCCCCTGATTCGACCCACCCAGCAAGTGAAATCGAGGGACGA
CCCGGATCACGAGGGGGCTACGTGTGGGCTTTCGATTTGGACGTGATTCG
GGCCCTTTTCGAGGCCTACACGTGTGCGTGCTACTATGACGTCATGAGCT
CAcccggcctctccctccacgatGCTCGCATTGACTTTATTCGAGCGGGA
AAAAACGAAGCGTGGACACCGGATGTACTTGCACGGTTCGGGGCCCTTCA
AGCAgggggacagggacaggTCAAATTGCATTGCCTGGAGCAAGCAGGGC
ATTGGATCCACGTGGATGATCTGGAAGGCGTGCTCCGACTTTTGGCCCCG
ACCTTCCTGCCACCCCtttga

Synonyms

Publications